Wall clock time and date at job start Tue Mar 31 2020 21:47:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.29947 * 126.29151 * 2 1 4 4 O 1.21308 * 110.25195 * 180.02562 * 3 2 1 5 5 C 1.33645 * 109.80985 * 0.02562 * 4 3 2 6 6 C 1.50696 * 126.54926 * 180.02562 * 5 4 3 7 7 C 1.52996 * 109.47351 * 269.95604 * 6 5 4 8 8 C 1.50696 * 109.47351 * 180.02562 * 7 6 5 9 9 O 1.21279 * 120.00022 * 0.02562 * 8 7 6 10 10 N 1.34779 * 119.99881 * 179.97438 * 8 7 6 11 11 C 1.46502 * 119.99678 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.46986 * 180.02562 * 11 10 8 13 13 C 1.52997 * 109.51008 * 305.09823 * 12 11 10 14 14 C 1.53293 * 109.51312 * 184.99805 * 12 11 10 15 15 N 1.47147 * 108.38714 * 187.77559 * 14 12 11 16 16 C 1.36943 * 120.98202 * 230.51661 * 15 14 12 17 17 H 1.07994 * 120.00028 * 153.32570 * 16 15 14 18 18 C 1.38808 * 119.99840 * 333.32665 * 16 15 14 19 19 N 1.31626 * 120.00079 * 343.53895 * 18 16 15 20 20 Si 1.86803 * 120.00035 * 163.54801 * 18 16 15 21 21 H 1.48498 * 109.46938 * 359.97438 * 20 18 16 22 22 H 1.48498 * 109.47108 * 119.99473 * 20 18 16 23 23 H 1.48497 * 109.46649 * 239.99629 * 20 18 16 24 24 C 1.47153 * 118.03502 * 50.53182 * 15 14 12 25 25 C 1.53292 * 108.38681 * 309.47006 * 24 15 14 26 26 O 1.42955 * 109.22215 * 52.29877 * 25 24 15 27 27 N 1.31129 * 106.89896 * 359.97438 * 5 4 3 28 28 H 1.09000 * 109.46719 * 269.97788 * 1 2 3 29 29 H 1.09007 * 109.46394 * 29.96978 * 1 2 3 30 30 H 1.08994 * 109.47452 * 149.97234 * 1 2 3 31 31 H 1.09000 * 109.47495 * 29.95611 * 6 5 4 32 32 H 1.09003 * 109.47089 * 149.95456 * 6 5 4 33 33 H 1.09002 * 109.46941 * 299.99884 * 7 6 5 34 34 H 1.09003 * 109.47145 * 59.99886 * 7 6 5 35 35 H 0.96990 * 120.00279 * 0.02562 * 10 8 7 36 36 H 1.09002 * 109.46973 * 299.99951 * 11 10 8 37 37 H 1.09003 * 109.47322 * 60.00081 * 11 10 8 38 38 H 1.09004 * 109.47191 * 60.00565 * 13 12 11 39 39 H 1.09006 * 109.46644 * 179.97438 * 13 12 11 40 40 H 1.08992 * 109.47673 * 300.00052 * 13 12 11 41 41 H 1.09000 * 109.68310 * 307.49961 * 14 12 11 42 42 H 1.09004 * 109.68086 * 68.01101 * 14 12 11 43 43 H 0.96996 * 119.99794 * 179.97438 * 19 18 16 44 44 H 1.09001 * 109.68187 * 69.19499 * 24 15 14 45 45 H 1.09007 * 109.67769 * 189.74483 * 24 15 14 46 46 H 1.08998 * 109.51588 * 172.22675 * 25 24 15 47 47 H 1.09008 * 109.51274 * 292.32527 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0474 0.0000 4 8 3.4420 0.7122 -0.0005 5 6 3.5299 -0.6213 -0.0015 6 6 4.7969 -1.4372 -0.0018 7 6 5.2254 -1.7132 -1.4443 8 6 6.4921 -2.5296 -1.4447 9 8 7.0016 -2.8588 -0.3945 10 7 7.0581 -2.8949 -2.6120 11 6 8.2892 -3.6891 -2.6123 12 6 8.7177 -3.9650 -4.0549 13 6 7.5643 -4.6247 -4.8134 14 6 9.9333 -4.8989 -4.0583 15 7 10.4388 -4.9980 -5.4366 16 6 10.6747 -6.2166 -6.0151 17 1 10.6219 -6.3241 -7.0884 18 6 10.9818 -7.3136 -5.2219 19 7 11.3637 -7.1376 -3.9746 20 14 10.8533 -9.0396 -5.9247 21 1 10.4054 -8.9662 -7.3386 22 1 12.1813 -9.7008 -5.8593 23 1 9.8704 -9.8237 -5.1346 24 6 10.6836 -3.7488 -6.1749 25 6 9.4316 -2.8709 -6.0685 26 8 9.0680 -2.7344 -4.6927 27 7 2.3030 -1.0842 -0.0009 28 1 -0.3633 -0.0004 1.0277 29 1 -0.3632 0.8903 -0.5134 30 1 -0.3634 -0.8897 -0.5142 31 1 5.5843 -0.8857 0.5119 32 1 4.6206 -2.3822 0.5120 33 1 4.4380 -2.2648 -1.9580 34 1 5.4017 -0.7682 -1.9582 35 1 6.6503 -2.6320 -3.4519 36 1 9.0770 -3.1381 -2.0986 37 1 8.1122 -4.6339 -2.0984 38 1 6.7010 -3.9593 -4.8122 39 1 7.8703 -4.8206 -5.8411 40 1 7.2999 -5.5638 -4.3274 41 1 10.7102 -4.4926 -3.4106 42 1 9.6386 -5.8863 -3.7028 43 1 11.5778 -7.9042 -3.4203 44 1 11.5361 -3.2267 -5.7405 45 1 10.8856 -3.9749 -7.2220 46 1 9.6397 -1.8872 -6.4894 47 1 8.6129 -3.3361 -6.6177 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108107981.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:47:00 Heat of formation + Delta-G solvation = -16.019685 kcal Electronic energy + Delta-G solvation = -29355.486443 eV Core-core repulsion = 25155.600653 eV Total energy + Delta-G solvation = -4199.885789 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -46.64209 -41.13914 -40.21251 -37.18005 -36.56519 -35.98051 -35.58811 -33.31132 -33.16700 -32.40231 -30.08557 -29.55701 -28.24238 -27.75317 -25.98107 -24.96374 -24.46167 -22.92482 -22.24751 -21.34156 -20.26547 -19.26843 -18.91554 -18.55272 -18.11255 -17.41693 -16.90071 -16.88641 -16.51254 -16.14437 -15.80360 -15.57070 -15.21868 -15.16113 -15.09264 -14.68894 -14.47597 -14.43582 -14.26590 -13.86067 -13.63814 -13.49729 -13.36558 -13.19327 -13.13194 -12.90569 -12.80030 -12.50883 -12.41524 -12.33602 -12.22095 -12.10310 -12.06129 -11.91903 -11.82477 -11.15618 -11.03724 -10.85285 -10.70486 -10.48421 -10.06161 -8.69561 -7.88645 -5.35750 0.06634 1.15175 1.45685 1.48382 1.58003 1.67151 1.69654 2.24032 2.49050 2.69149 2.82738 3.06483 3.26244 3.53017 3.62570 3.86705 3.97030 4.04041 4.06382 4.13478 4.15517 4.45127 4.46794 4.49071 4.54357 4.58281 4.60835 4.64868 4.68741 4.74707 4.81331 4.83624 4.93127 4.96258 4.99931 5.07968 5.11093 5.15432 5.23716 5.39397 5.43494 5.56507 5.63408 6.31206 6.40041 6.58420 7.08683 7.11653 7.27185 7.77767 8.31577 9.16898 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.021330 B = 0.002036 C = 0.001982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.419047 B =13746.694624 C =14123.182571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.162 3.838 3 N -0.411 5.411 4 O 0.069 5.931 5 C 0.199 3.801 6 C -0.008 4.008 7 C -0.125 4.125 8 C 0.515 3.485 9 O -0.582 6.582 10 N -0.707 5.707 11 C 0.149 3.851 12 C 0.093 3.907 13 C -0.154 4.154 14 C 0.166 3.834 15 N -0.607 5.607 16 C -0.257 4.257 17 H 0.073 0.927 18 C -0.050 4.050 19 N -0.936 5.936 20 Si 0.965 3.035 21 H -0.264 1.264 22 H -0.296 1.296 23 H -0.290 1.290 24 C 0.101 3.899 25 C 0.053 3.947 26 O -0.384 6.384 27 N -0.501 5.501 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.102 0.898 31 H 0.119 0.881 32 H 0.117 0.883 33 H 0.121 0.879 34 H 0.126 0.874 35 H 0.415 0.585 36 H 0.057 0.943 37 H 0.072 0.928 38 H 0.080 0.920 39 H 0.059 0.941 40 H 0.055 0.945 41 H -0.008 1.008 42 H 0.066 0.934 43 H 0.250 0.750 44 H 0.012 0.988 45 H 0.070 0.930 46 H 0.117 0.883 47 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.849 14.264 2.884 24.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 N -0.122 5.122 4 O 0.014 5.986 5 C -0.021 4.021 6 C -0.048 4.048 7 C -0.166 4.166 8 C 0.303 3.697 9 O -0.463 6.463 10 N -0.360 5.360 11 C 0.024 3.976 12 C 0.051 3.949 13 C -0.211 4.211 14 C 0.040 3.960 15 N -0.331 5.331 16 C -0.387 4.387 17 H 0.090 0.910 18 C -0.246 4.246 19 N -0.582 5.582 20 Si 0.794 3.206 21 H -0.188 1.188 22 H -0.223 1.223 23 H -0.217 1.217 24 C -0.024 4.024 25 C -0.024 4.024 26 O -0.303 6.303 27 N -0.236 5.236 28 H 0.120 0.880 29 H 0.117 0.883 30 H 0.121 0.879 31 H 0.137 0.863 32 H 0.135 0.865 33 H 0.139 0.861 34 H 0.144 0.856 35 H 0.253 0.747 36 H 0.075 0.925 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.078 0.922 40 H 0.074 0.926 41 H 0.010 0.990 42 H 0.084 0.916 43 H 0.059 0.941 44 H 0.030 0.970 45 H 0.089 0.911 46 H 0.135 0.865 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.064 14.596 3.783 25.099 hybrid contribution 0.839 -1.386 -0.494 1.694 sum -19.226 13.210 3.289 23.557 Atomic orbital electron populations 1.20351 0.80523 1.05793 1.05498 1.26645 1.02144 0.83027 0.99209 1.74653 0.89770 1.24728 1.23060 1.85284 1.22244 1.25174 1.65894 1.29031 0.97116 0.81901 0.94100 1.19993 0.87350 0.98864 0.98568 1.21563 0.95033 1.02644 0.97333 1.20889 0.86137 0.79647 0.83034 1.90731 1.65689 1.57332 1.32520 1.45844 1.26263 1.54430 1.09421 1.20991 0.86637 0.95710 0.94224 1.22198 0.95324 0.85576 0.91753 1.22114 0.97160 1.00597 1.01223 1.21071 0.91498 0.97724 0.85736 1.44254 1.75177 1.01427 1.12253 1.19526 1.40730 0.86268 0.92157 0.90954 1.25793 0.99517 1.02205 0.97063 1.70184 1.49180 1.29905 1.08932 0.85234 0.76737 0.80301 0.78350 1.18795 1.22338 1.21670 1.21827 0.96181 0.87672 0.96768 1.23087 0.96093 1.00819 0.82413 1.87830 1.87698 1.29739 1.25062 1.71972 1.00309 1.29899 1.21425 0.87996 0.88349 0.87907 0.86289 0.86495 0.86113 0.85593 0.74717 0.92498 0.91013 0.90089 0.92198 0.92605 0.98989 0.91565 0.94079 0.97045 0.91114 0.86539 0.92093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 71.24 0.75 0.12 16 2 C 0.16 2.98 8.22 138.46 1.14 4.12 16 3 N -0.41 -8.66 12.16 -60.27 -0.73 -9.39 16 4 O 0.07 1.36 11.31 74.81 0.85 2.20 16 5 C 0.20 3.43 7.77 88.38 0.69 4.12 16 6 C -0.01 -0.12 5.13 29.85 0.15 0.03 16 7 C -0.13 -1.62 5.68 29.85 0.17 -1.45 16 8 C 0.52 11.48 7.83 87.66 0.69 12.17 16 9 O -0.58 -17.96 15.98 -3.03 -0.05 -18.01 16 10 N -0.71 -16.30 5.20 -463.04 -2.41 -18.71 16 11 C 0.15 4.73 4.85 86.38 0.42 5.15 16 12 C 0.09 3.20 0.78 -10.69 -0.01 3.19 16 13 C -0.15 -4.63 7.87 71.98 0.57 -4.07 16 14 C 0.17 7.76 4.10 86.35 0.35 8.11 16 15 N -0.61 -29.07 2.57 -697.55 -1.79 -30.86 16 16 C -0.26 -13.47 9.65 84.03 0.81 -12.66 16 17 H 0.07 3.66 7.88 -2.91 -0.02 3.64 16 18 C -0.05 -2.73 4.95 84.86 0.42 -2.31 16 19 N -0.94 -54.40 11.14 21.65 0.24 -54.16 16 20 Si 0.97 43.59 29.58 68.60 2.03 45.62 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.47 16 22 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 23 H -0.29 -13.07 7.11 99.48 0.71 -12.37 16 24 C 0.10 3.94 6.73 86.35 0.58 4.52 16 25 C 0.05 1.61 6.60 72.08 0.48 2.09 16 26 O -0.38 -12.65 10.18 -148.98 -1.52 -14.17 16 27 N -0.50 -9.89 11.55 -303.16 -3.50 -13.39 16 28 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 29 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.12 1.57 8.10 -2.39 -0.02 1.55 16 32 H 0.12 1.80 8.10 -2.39 -0.02 1.78 16 33 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.13 1.11 8.14 -2.39 -0.02 1.09 16 35 H 0.42 7.46 6.98 -92.72 -0.65 6.81 16 36 H 0.06 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 38 H 0.08 1.80 6.57 -2.39 -0.02 1.78 16 39 H 0.06 2.00 6.12 -2.38 -0.01 1.99 16 40 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 41 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 42 H 0.07 3.47 6.16 -2.38 -0.01 3.46 16 43 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 44 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 45 H 0.07 2.59 7.96 -2.38 -0.02 2.57 16 46 H 0.12 2.73 8.14 -2.39 -0.02 2.71 16 47 H 0.06 1.73 6.26 -2.38 -0.01 1.72 16 Total: -1.00 -72.06 383.65 0.67 -71.39 By element: Atomic # 1 Polarization: 15.99 SS G_CDS: 0.35 Total: 16.34 kcal Atomic # 6 Polarization: 15.94 SS G_CDS: 7.20 Total: 23.14 kcal Atomic # 7 Polarization: -118.32 SS G_CDS: -8.19 Total: -126.51 kcal Atomic # 8 Polarization: -29.26 SS G_CDS: -0.72 Total: -29.98 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 2.03 Total: 45.62 kcal Total: -72.06 0.67 -71.39 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108107981.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.368 kcal (2) G-P(sol) polarization free energy of solvation -72.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds