Wall clock time and date at job start Tue Mar 31 2020 20:31:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35849 * 117.00393 * 2 1 4 4 N 1.30814 * 126.05874 * 0.02562 * 3 2 1 5 5 N 1.39912 * 108.88014 * 179.97438 * 4 3 2 6 6 C 1.46506 * 125.68905 * 180.02562 * 5 4 3 7 7 C 1.34163 * 108.62657 * 359.74557 * 5 4 3 8 8 C 1.38136 * 107.50720 * 0.39664 * 7 5 4 9 9 C 1.47245 * 126.44924 * 179.87145 * 8 7 5 10 10 O 1.21624 * 119.99837 * 179.68935 * 9 8 7 11 11 N 1.34773 * 120.00082 * 359.68604 * 9 8 7 12 12 C 1.46499 * 120.00016 * 180.27506 * 11 9 8 13 13 C 1.53005 * 109.47067 * 179.72395 * 12 11 9 14 14 C 1.53002 * 109.51470 * 305.00335 * 13 12 11 15 15 C 1.53288 * 109.51402 * 184.89829 * 13 12 11 16 16 N 1.47146 * 108.38816 * 187.77734 * 15 13 12 17 17 C 1.36944 * 120.98330 * 230.51540 * 16 15 13 18 18 H 1.08004 * 119.99584 * 153.32120 * 17 16 15 19 19 C 1.38803 * 119.99873 * 333.32756 * 17 16 15 20 20 N 1.31617 * 120.00250 * 343.54223 * 19 17 16 21 21 Si 1.86798 * 120.00036 * 163.54903 * 19 17 16 22 22 H 1.48499 * 109.47250 * 89.99495 * 21 19 17 23 23 H 1.48505 * 109.47283 * 209.99562 * 21 19 17 24 24 H 1.48500 * 109.47117 * 329.99457 * 21 19 17 25 25 C 1.47156 * 118.03532 * 50.53591 * 16 15 13 26 26 C 1.53297 * 108.38200 * 309.46666 * 25 16 15 27 27 O 1.42956 * 109.26540 * 52.27623 * 26 25 16 28 28 H 1.08998 * 109.47291 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46648 * 299.99654 * 1 2 3 30 30 H 1.09005 * 109.46957 * 59.99336 * 1 2 3 31 31 H 1.09004 * 109.46840 * 89.97432 * 6 5 4 32 32 H 1.08994 * 109.47145 * 209.97473 * 6 5 4 33 33 H 1.09000 * 109.46646 * 329.98089 * 6 5 4 34 34 H 1.07994 * 126.24902 * 180.26922 * 7 5 4 35 35 H 0.97000 * 119.99659 * 0.02562 * 11 9 8 36 36 H 1.08998 * 109.47483 * 299.72519 * 12 11 9 37 37 H 1.09001 * 109.46799 * 59.73191 * 12 11 9 38 38 H 1.09001 * 109.47297 * 59.99771 * 14 13 12 39 39 H 1.08994 * 109.47234 * 179.97438 * 14 13 12 40 40 H 1.09004 * 109.46877 * 299.99887 * 14 13 12 41 41 H 1.08998 * 109.68260 * 307.50218 * 15 13 12 42 42 H 1.09003 * 109.67948 * 68.01612 * 15 13 12 43 43 H 0.97005 * 120.00393 * 180.02562 * 20 19 17 44 44 H 1.08993 * 109.68346 * 69.18993 * 25 16 15 45 45 H 1.09001 * 109.67999 * 189.74715 * 25 16 15 46 46 H 1.08996 * 109.50823 * 172.22963 * 26 25 16 47 47 H 1.09009 * 109.51398 * 292.32558 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0458 1.2104 0.0000 4 7 1.4532 2.3766 0.0005 5 7 2.4283 3.3799 0.0009 6 6 2.1707 4.8222 0.0020 7 6 3.6387 2.8012 0.0063 8 6 3.4453 1.4334 0.0002 9 6 4.4956 0.4014 0.0004 10 8 4.1911 -0.7761 0.0003 11 7 5.7943 0.7616 0.0005 12 6 6.8392 -0.2651 -0.0054 13 6 8.2140 0.4064 -0.0109 14 6 8.3049 1.3754 -1.1915 15 6 9.3053 -0.6623 -0.1405 16 7 10.6136 -0.0146 0.0447 17 6 11.6280 -0.2047 -0.8554 18 1 12.3898 0.5511 -0.9779 19 6 11.6771 -1.3685 -1.6102 20 7 10.9649 -2.4158 -1.2520 21 14 12.7539 -1.4484 -3.1345 22 1 14.1077 -1.9297 -2.7594 23 1 12.1510 -2.3836 -4.1180 24 1 12.8590 -0.0956 -3.7378 25 6 10.7997 0.8431 1.2259 26 6 9.6356 1.8384 1.2889 27 8 8.3996 1.1242 1.2114 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5138 0.8901 30 1 -0.3633 0.5140 -0.8900 31 1 2.1067 5.1790 1.0300 32 1 2.9829 5.3367 -0.5113 33 1 1.2307 5.0236 -0.5117 34 1 4.5905 3.3114 0.0120 35 1 6.0371 1.7008 0.0009 36 1 6.7424 -0.8873 0.8842 37 1 6.7343 -0.8851 -0.8957 38 1 7.5298 2.1360 -1.0977 39 1 9.2843 1.8536 -1.1945 40 1 8.1650 0.8270 -2.1231 41 1 9.1629 -1.4269 0.6232 42 1 9.2574 -1.1179 -1.1295 43 1 10.9995 -3.2293 -1.7793 44 1 10.8078 0.2301 2.1271 45 1 11.7418 1.3849 1.1413 46 1 9.6789 2.3903 2.2278 47 1 9.7065 2.5351 0.4535 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108113999.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:29 Heat of formation + Delta-G solvation = 0.664040 kcal Electronic energy + Delta-G solvation = -30218.354339 eV Core-core repulsion = 26019.192011 eV Total energy + Delta-G solvation = -4199.162329 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -41.66224 -39.45068 -38.42788 -38.37095 -34.80750 -34.27445 -33.15000 -31.86303 -31.24533 -30.37871 -28.10887 -27.93448 -26.84121 -26.21321 -25.31038 -23.22549 -22.71879 -21.34330 -20.94645 -20.06799 -18.79957 -18.14521 -17.09910 -16.90954 -16.48095 -15.96759 -15.78043 -15.34740 -15.21373 -15.07740 -14.95896 -14.44480 -14.33653 -14.01164 -13.86541 -13.52190 -13.21030 -13.09082 -13.00704 -12.93300 -12.65020 -12.35325 -12.10457 -11.83307 -11.57606 -11.40414 -11.17661 -11.05022 -10.98886 -10.79813 -10.64817 -10.29963 -10.25058 -9.96954 -9.67440 -9.49655 -9.35579 -9.01505 -8.79693 -8.53941 -8.51741 -6.71889 -5.83193 -3.27128 1.28442 1.93050 2.15283 3.04998 3.34289 3.41892 3.43183 3.55859 3.64970 4.11661 4.28782 4.39859 4.44879 4.72152 4.81447 4.98224 5.03274 5.07940 5.17615 5.21278 5.32618 5.35405 5.41499 5.53099 5.56121 5.59506 5.69502 5.92030 5.95369 6.09422 6.15216 6.18504 6.36345 6.48673 6.48960 6.62637 6.74614 6.82674 6.84537 7.02515 7.09732 7.40168 7.50209 7.71589 7.86620 7.91235 8.34631 8.60566 9.12122 9.75197 10.32634 11.24708 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017364 B = 0.002668 C = 0.002508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1612.156416 B =10493.155108 C =11160.870459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.265 6.265 3 C 0.315 3.685 4 N -0.355 5.355 5 N -0.350 5.350 6 C 0.100 3.900 7 C 0.122 3.878 8 C -0.285 4.285 9 C 0.588 3.412 10 O -0.535 6.535 11 N -0.718 5.718 12 C 0.142 3.858 13 C 0.078 3.922 14 C -0.161 4.161 15 C 0.160 3.840 16 N -0.591 5.591 17 C -0.255 4.255 18 H 0.067 0.933 19 C 0.004 3.996 20 N -0.900 5.900 21 Si 0.902 3.098 22 H -0.287 1.287 23 H -0.289 1.289 24 H -0.279 1.279 25 C 0.109 3.891 26 C 0.046 3.954 27 O -0.383 6.383 28 H 0.102 0.898 29 H 0.056 0.944 30 H 0.056 0.944 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.092 0.908 34 H 0.190 0.810 35 H 0.396 0.604 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.040 0.960 39 H 0.072 0.928 40 H 0.063 0.937 41 H 0.030 0.970 42 H 0.096 0.904 43 H 0.256 0.744 44 H 0.025 0.975 45 H 0.060 0.940 46 H 0.079 0.921 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.310 15.740 2.386 23.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.167 6.167 3 C 0.110 3.890 4 N -0.195 5.195 5 N -0.132 5.132 6 C -0.040 4.040 7 C -0.030 4.030 8 C -0.300 4.300 9 C 0.374 3.626 10 O -0.412 6.412 11 N -0.370 5.370 12 C 0.019 3.981 13 C 0.037 3.963 14 C -0.218 4.218 15 C 0.033 3.967 16 N -0.314 5.314 17 C -0.384 4.384 18 H 0.085 0.915 19 C -0.195 4.195 20 N -0.544 5.544 21 Si 0.732 3.268 22 H -0.214 1.214 23 H -0.215 1.215 24 H -0.205 1.205 25 C -0.018 4.018 26 C -0.032 4.032 27 O -0.303 6.303 28 H 0.120 0.880 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.098 0.902 32 H 0.112 0.888 33 H 0.111 0.889 34 H 0.207 0.793 35 H 0.230 0.770 36 H 0.092 0.908 37 H 0.100 0.900 38 H 0.059 0.941 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.048 0.952 42 H 0.114 0.886 43 H 0.066 0.934 44 H 0.043 0.957 45 H 0.079 0.921 46 H 0.097 0.903 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -18.714 15.084 2.439 24.160 hybrid contribution 1.474 0.154 -0.908 1.738 sum -17.240 15.238 1.531 23.060 Atomic orbital electron populations 1.23028 0.77883 1.03793 1.01831 1.86536 1.21626 1.20374 1.88186 1.20419 0.90142 0.85209 0.93206 1.77293 1.13162 0.94601 1.34460 1.47654 1.03172 1.06469 1.55903 1.22005 1.04534 0.73558 1.03945 1.23080 0.91208 0.92215 0.96532 1.19790 0.91912 0.92627 1.25697 1.17062 0.81519 0.87473 0.76500 1.90812 1.82246 1.17989 1.50142 1.45804 1.05081 1.10394 1.75756 1.21310 0.83850 0.89977 1.03005 1.22551 0.95111 0.94247 0.84357 1.22196 1.01912 0.99164 0.98550 1.21282 0.81911 0.90537 1.02924 1.43998 1.09407 1.55175 1.22860 1.19126 1.05082 1.00003 1.14215 0.91513 1.25048 0.99188 0.94699 1.00552 1.70007 1.43790 1.02002 1.38629 0.86310 0.80039 0.77443 0.83041 1.21367 1.21457 1.20499 1.21596 0.96046 0.93049 0.91064 1.23023 0.85639 0.94328 1.00200 1.87831 1.38029 1.66478 1.37960 0.88003 0.92548 0.92551 0.90183 0.88777 0.88909 0.79325 0.76955 0.90826 0.90000 0.94105 0.90862 0.91814 0.95212 0.88579 0.93398 0.95677 0.92120 0.90284 0.93468 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.70 101.05 1.08 1.38 16 2 O -0.27 -3.99 9.98 -24.62 -0.25 -4.24 16 3 C 0.32 4.61 7.85 -16.66 -0.13 4.48 16 4 N -0.35 -4.44 11.90 30.79 0.37 -4.07 16 5 N -0.35 -3.23 3.97 -67.59 -0.27 -3.50 16 6 C 0.10 0.40 11.44 59.85 0.68 1.09 16 7 C 0.12 1.16 10.98 -16.57 -0.18 0.97 16 8 C -0.28 -3.98 6.14 -104.95 -0.64 -4.63 16 9 C 0.59 9.84 7.81 -12.60 -0.10 9.74 16 10 O -0.53 -11.17 16.43 -0.10 0.00 -11.18 16 11 N -0.72 -10.73 5.18 -61.44 -0.32 -11.05 16 12 C 0.14 2.50 4.85 -4.04 -0.02 2.48 16 13 C 0.08 1.44 0.78 -90.47 -0.07 1.37 16 14 C -0.16 -2.66 7.87 37.16 0.29 -2.37 16 15 C 0.16 3.71 4.11 -3.54 -0.01 3.70 16 16 N -0.59 -14.25 2.57 -171.84 -0.44 -14.69 16 17 C -0.26 -6.73 9.65 -15.06 -0.15 -6.87 16 18 H 0.07 1.72 7.88 -52.48 -0.41 1.31 16 19 C 0.00 0.11 4.95 -17.43 -0.09 0.03 16 20 N -0.90 -25.62 11.14 55.49 0.62 -25.00 16 21 Si 0.90 21.17 29.58 -169.99 -5.03 16.14 16 22 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 23 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 25 C 0.11 2.20 6.74 -3.53 -0.02 2.18 16 26 C 0.05 0.77 6.60 37.31 0.25 1.02 16 27 O -0.38 -6.93 10.17 -35.23 -0.36 -7.29 16 28 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.09 0.14 8.14 -51.93 -0.42 -0.29 16 33 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 34 H 0.19 1.01 7.46 -52.49 -0.39 0.62 16 35 H 0.40 4.84 5.91 -40.82 -0.24 4.60 16 36 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 37 H 0.08 1.50 8.14 -51.93 -0.42 1.07 16 38 H 0.04 0.54 6.58 -51.93 -0.34 0.20 16 39 H 0.07 1.32 6.12 -51.93 -0.32 1.01 16 40 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 42 H 0.10 2.47 6.16 -51.93 -0.32 2.15 16 43 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 44 H 0.03 0.54 8.14 -51.93 -0.42 0.11 16 45 H 0.06 1.16 7.96 -51.93 -0.41 0.75 16 46 H 0.08 1.11 8.14 -51.93 -0.42 0.68 16 47 H 0.05 0.76 6.26 -51.92 -0.32 0.43 16 LS Contribution 383.04 15.07 5.77 5.77 Total: -1.00 -35.73 383.04 -5.99 -41.72 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -6.97 Total: 2.82 kcal Atomic # 6 Polarization: 13.70 SS G_CDS: 0.89 Total: 14.58 kcal Atomic # 7 Polarization: -58.28 SS G_CDS: -0.04 Total: -58.32 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.61 Total: -22.71 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -35.73 -5.99 -41.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108113999.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.380 kcal (2) G-P(sol) polarization free energy of solvation -35.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds