Wall clock time and date at job start Tue Mar 31 2020 20:31:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46508 * 1 3 3 C 1.35877 * 126.07687 * 2 1 4 4 C 1.35580 * 107.57707 * 180.11568 * 3 2 1 5 5 O 1.36233 * 126.04945 * 179.89980 * 4 3 2 6 6 C 1.42905 * 117.00017 * 179.71243 * 5 4 3 7 7 C 1.50695 * 109.47153 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00036 * 0.02562 * 7 6 5 9 9 N 1.34774 * 120.00255 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00289 * 180.02562 * 9 7 6 11 11 C 1.53001 * 109.47082 * 180.02562 * 10 9 7 12 12 C 1.52999 * 109.51448 * 60.09947 * 11 10 9 13 13 C 1.53294 * 109.51225 * 180.25616 * 11 10 9 14 14 N 1.47231 * 108.40580 * 172.23190 * 13 11 10 15 15 C 1.36930 * 121.03478 * 129.45775 * 14 13 11 16 16 H 1.08002 * 120.00530 * 206.18179 * 15 14 13 17 17 C 1.38816 * 119.99608 * 26.18409 * 15 14 13 18 18 N 1.31615 * 120.00526 * 16.88476 * 17 15 14 19 19 Si 1.86806 * 119.99896 * 196.88547 * 17 15 14 20 20 H 1.48497 * 109.46975 * 59.99586 * 19 17 15 21 21 H 1.48495 * 109.47304 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47064 * 300.00118 * 19 17 15 23 23 C 1.47154 * 117.98080 * 309.48144 * 14 13 11 24 24 C 1.53298 * 108.41825 * 50.52276 * 23 14 13 25 25 O 1.42959 * 109.51185 * 300.00138 * 11 10 9 26 26 C 1.40114 * 107.89953 * 359.63233 * 4 3 2 27 27 N 1.30862 * 108.35555 * 0.22721 * 26 4 3 28 28 H 1.08998 * 109.47249 * 270.27098 * 1 2 3 29 29 H 1.08997 * 109.47080 * 30.26886 * 1 2 3 30 30 H 1.08997 * 109.46749 * 150.26681 * 1 2 3 31 31 H 1.08001 * 126.21115 * 0.02562 * 3 2 1 32 32 H 1.08999 * 109.46716 * 59.99996 * 6 5 4 33 33 H 1.08999 * 109.47020 * 299.99847 * 6 5 4 34 34 H 0.97000 * 119.99622 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.46877 * 60.00024 * 10 9 7 36 36 H 1.08999 * 109.47195 * 299.99992 * 10 9 7 37 37 H 1.09004 * 109.47366 * 299.89914 * 12 11 10 38 38 H 1.09004 * 109.47010 * 59.89917 * 12 11 10 39 39 H 1.09003 * 109.47551 * 179.89846 * 12 11 10 40 40 H 1.09001 * 109.68145 * 291.94467 * 13 11 10 41 41 H 1.09001 * 109.68444 * 52.49853 * 13 11 10 42 42 H 0.97002 * 120.00383 * 180.02562 * 18 17 15 43 43 H 1.08997 * 109.68310 * 290.77594 * 23 14 13 44 44 H 1.09005 * 109.67869 * 170.26376 * 23 14 13 45 45 H 1.09001 * 109.51044 * 67.59999 * 24 23 14 46 46 H 1.09000 * 109.51036 * 187.70217 * 24 23 14 47 47 H 1.08000 * 125.81972 * 180.26675 * 26 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2652 1.0982 0.0000 4 6 3.5510 0.6680 -0.0026 5 8 4.6607 1.4582 -0.0054 6 6 5.9277 0.7972 -0.0015 7 6 7.0302 1.8246 -0.0060 8 8 6.7578 3.0064 -0.0115 9 7 8.3189 1.4301 -0.0029 10 6 9.3908 2.4289 -0.0067 11 6 10.7473 1.7212 -0.0026 12 6 10.8687 0.8418 -1.2487 13 6 11.8695 2.7655 -0.0001 14 7 13.1522 2.0689 0.1926 15 6 14.2123 2.2975 -0.6436 16 1 14.9642 1.5350 -0.7832 17 6 14.3204 3.5095 -1.3117 18 7 13.6189 4.5478 -0.9092 19 14 15.4616 3.6668 -2.7822 20 1 15.0425 2.7108 -3.8385 21 1 15.3957 5.0516 -3.3141 22 1 16.8535 3.3625 -2.3634 23 6 13.2607 1.1188 1.3110 24 6 12.0707 0.1547 1.2447 25 8 10.8582 0.9083 1.1681 26 6 3.5363 -0.7330 0.0043 27 7 2.2900 -1.1321 0.0059 28 1 -0.3633 0.0049 1.0276 29 1 -0.3633 0.8875 -0.5180 30 1 -0.3633 -0.8924 -0.5097 31 1 1.9366 2.1270 0.0004 32 1 6.0128 0.1696 -0.8886 33 1 6.0116 0.1777 0.8914 34 1 8.5368 0.4849 0.0019 35 1 9.3054 3.0568 0.8802 36 1 9.3071 3.0482 -0.8997 37 1 10.0726 0.0972 -1.2470 38 1 10.7840 1.4623 -2.1409 39 1 11.8360 0.3394 -1.2461 40 1 11.8796 3.2958 -0.9524 41 1 11.7105 3.4735 0.8132 42 1 13.6942 5.3946 -1.3763 43 1 13.2418 1.6609 2.2564 44 1 14.1921 0.5586 1.2277 45 1 12.1630 -0.4773 0.3615 46 1 12.0570 -0.4687 2.1387 47 1 4.4054 -1.3742 0.0083 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108162338.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:42 Heat of formation + Delta-G solvation = -22.533953 kcal Electronic energy + Delta-G solvation = -29328.515702 eV Core-core repulsion = 25128.347433 eV Total energy + Delta-G solvation = -4200.168269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.23840 -41.15669 -40.28398 -38.69938 -36.51825 -35.90322 -33.84953 -33.33466 -33.17000 -31.19824 -29.61154 -29.30482 -27.95722 -27.32258 -26.60014 -24.96319 -23.05887 -22.37129 -22.04345 -21.34252 -20.27070 -19.13098 -18.92029 -18.26043 -17.50661 -17.32819 -16.95467 -16.77042 -16.33920 -16.25789 -16.09914 -15.67727 -15.54394 -15.29312 -15.24008 -15.18879 -14.77293 -14.58056 -14.22257 -13.97303 -13.53323 -13.39934 -13.33849 -13.19543 -13.16049 -12.89579 -12.74131 -12.50608 -12.42620 -12.17394 -12.08853 -11.93364 -11.83190 -11.71170 -11.15600 -10.93836 -10.72232 -10.47659 -10.42666 -10.14907 -8.89440 -8.70249 -7.88320 -5.34871 0.80692 1.37758 1.47349 1.49253 1.54523 1.56037 1.75972 1.82026 2.48579 2.73124 2.83286 3.26280 3.51767 3.64818 3.83415 3.90271 3.95747 4.04563 4.13335 4.16795 4.23614 4.28545 4.45261 4.48860 4.49494 4.59564 4.60378 4.66775 4.73973 4.74295 4.76479 4.81937 5.00042 5.07282 5.14971 5.23598 5.25183 5.34333 5.39605 5.55866 5.62917 5.99116 6.30634 6.35947 6.39277 6.54990 6.61700 7.08320 7.19892 7.77957 8.31858 9.17099 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024767 B = 0.002009 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1130.287724 B =13935.574453 C =14436.725531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.371 5.371 3 C 0.023 3.977 4 C -0.055 4.055 5 O -0.307 6.307 6 C 0.054 3.946 7 C 0.511 3.489 8 O -0.577 6.577 9 N -0.698 5.698 10 C 0.151 3.849 11 C 0.095 3.905 12 C -0.154 4.154 13 C 0.166 3.834 14 N -0.606 5.606 15 C -0.259 4.259 16 H 0.074 0.926 17 C -0.050 4.050 18 N -0.936 5.936 19 Si 0.966 3.034 20 H -0.275 1.275 21 H -0.298 1.298 22 H -0.276 1.276 23 C 0.100 3.900 24 C 0.053 3.947 25 O -0.384 6.384 26 C -0.005 4.005 27 N -0.304 5.304 28 H 0.087 0.913 29 H 0.113 0.887 30 H 0.095 0.905 31 H 0.202 0.798 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.419 0.581 35 H 0.054 0.946 36 H 0.073 0.927 37 H 0.082 0.918 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.067 0.933 41 H -0.008 1.008 42 H 0.250 0.750 43 H 0.011 0.989 44 H 0.071 0.929 45 H 0.063 0.937 46 H 0.118 0.882 47 H 0.212 0.788 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.510 -14.584 1.192 26.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.159 5.159 3 C -0.122 4.122 4 C -0.109 4.109 5 O -0.220 6.220 6 C -0.024 4.024 7 C 0.297 3.703 8 O -0.456 6.456 9 N -0.352 5.352 10 C 0.026 3.974 11 C 0.054 3.946 12 C -0.211 4.211 13 C 0.039 3.961 14 N -0.330 5.330 15 C -0.389 4.389 16 H 0.092 0.908 17 C -0.246 4.246 18 N -0.582 5.582 19 Si 0.794 3.206 20 H -0.200 1.200 21 H -0.225 1.225 22 H -0.201 1.201 23 C -0.025 4.025 24 C -0.024 4.024 25 O -0.303 6.303 26 C -0.190 4.190 27 N -0.128 5.128 28 H 0.106 0.894 29 H 0.132 0.868 30 H 0.114 0.886 31 H 0.219 0.781 32 H 0.139 0.861 33 H 0.137 0.863 34 H 0.257 0.743 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.101 0.899 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.085 0.915 41 H 0.010 0.990 42 H 0.059 0.941 43 H 0.029 0.971 44 H 0.090 0.910 45 H 0.081 0.919 46 H 0.136 0.864 47 H 0.229 0.771 Dipole moment (debyes) X Y Z Total from point charges -23.719 -14.370 1.270 27.762 hybrid contribution 1.989 1.137 -0.675 2.389 sum -21.730 -13.233 0.595 25.449 Atomic orbital electron populations 1.22225 0.70989 1.06158 1.04806 1.48652 1.07834 1.02345 1.57082 1.22005 0.88726 0.94788 1.06673 1.18934 0.87574 0.90015 1.14387 1.86048 1.11655 1.32620 1.91648 1.22441 0.80254 0.93243 1.06448 1.20716 0.84119 0.89657 0.75795 1.90734 1.83881 1.20380 1.50595 1.45567 1.03995 1.11245 1.74401 1.21032 0.83933 0.90667 1.01745 1.22171 0.93641 0.92192 0.86634 1.22128 1.02811 0.99941 0.96263 1.21086 0.83902 0.91489 0.99640 1.44248 1.09118 1.48763 1.30907 1.19473 1.03173 0.97288 1.18965 0.90838 1.25787 1.00959 0.94638 1.03173 1.70174 1.46060 1.00737 1.41268 0.85360 0.79029 0.76221 0.79962 1.20047 1.22489 1.20147 1.21835 0.98670 0.92224 0.89768 1.23106 0.83601 0.92815 1.02878 1.87820 1.39634 1.60404 1.42433 1.24468 0.96825 0.93736 1.03994 1.77207 1.01662 1.09981 1.23979 0.89413 0.86835 0.88618 0.78122 0.86104 0.86326 0.74295 0.92773 0.90915 0.89897 0.92696 0.92030 0.91513 0.99040 0.94092 0.97108 0.91033 0.91932 0.86380 0.77106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.62 11.48 127.77 1.47 2.09 16 2 N -0.37 -5.98 4.04 -368.56 -1.49 -7.47 16 3 C 0.02 0.41 11.56 83.45 0.96 1.37 16 4 C -0.05 -1.15 6.96 22.11 0.15 -0.99 16 5 O -0.31 -7.67 9.76 -77.18 -0.75 -8.43 16 6 C 0.05 1.00 5.56 71.23 0.40 1.40 16 7 C 0.51 14.08 7.91 87.66 0.69 14.77 16 8 O -0.58 -22.32 16.50 16.00 0.26 -22.06 16 9 N -0.70 -17.61 5.15 -463.06 -2.39 -19.99 16 10 C 0.15 5.06 4.82 86.38 0.42 5.47 16 11 C 0.09 3.34 0.76 -10.70 -0.01 3.34 16 12 C -0.15 -4.72 7.92 71.98 0.57 -4.15 16 13 C 0.17 7.84 4.12 86.34 0.36 8.20 16 14 N -0.61 -29.25 2.57 -697.32 -1.79 -31.05 16 15 C -0.26 -13.67 9.65 84.04 0.81 -12.86 16 16 H 0.07 3.72 7.88 -2.91 -0.02 3.69 16 17 C -0.05 -2.74 4.95 84.86 0.42 -2.32 16 18 N -0.94 -54.99 11.14 21.65 0.24 -54.75 16 19 Si 0.97 43.89 29.59 68.60 2.03 45.92 16 20 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 21 H -0.30 -13.87 7.11 99.48 0.71 -13.16 16 22 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 23 C 0.10 3.93 6.73 86.35 0.58 4.52 16 24 C 0.05 1.61 6.60 72.08 0.48 2.08 16 25 O -0.38 -12.70 9.97 -148.98 -1.49 -14.18 16 26 C 0.00 -0.09 11.07 85.29 0.94 0.86 16 27 N -0.30 -6.09 12.57 -56.85 -0.71 -6.81 16 28 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 29 H 0.11 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.20 2.53 8.06 -2.91 -0.02 2.50 16 32 H 0.12 1.42 8.10 -2.39 -0.02 1.40 16 33 H 0.12 1.47 8.10 -2.39 -0.02 1.45 16 34 H 0.42 7.82 7.20 -92.71 -0.67 7.15 16 35 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 36 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 37 H 0.08 1.87 6.87 -2.38 -0.02 1.85 16 38 H 0.05 1.78 8.14 -2.38 -0.02 1.76 16 39 H 0.06 2.07 6.12 -2.39 -0.01 2.06 16 40 H 0.07 3.55 6.14 -2.39 -0.01 3.54 16 41 H -0.01 -0.45 8.14 -2.39 -0.02 -0.47 16 42 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 43 H 0.01 0.46 8.14 -2.39 -0.02 0.44 16 44 H 0.07 2.62 7.96 -2.38 -0.02 2.60 16 45 H 0.06 1.76 6.25 -2.39 -0.01 1.74 16 46 H 0.12 2.74 8.14 -2.39 -0.02 2.72 16 47 H 0.21 2.22 7.69 -2.91 -0.02 2.20 16 Total: -1.00 -79.53 384.66 2.47 -77.06 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.32 Total: 17.98 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 8.24 Total: 23.77 kcal Atomic # 7 Polarization: -113.92 SS G_CDS: -6.14 Total: -120.06 kcal Atomic # 8 Polarization: -42.69 SS G_CDS: -1.97 Total: -44.66 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -79.53 2.47 -77.06 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108162338.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.526 kcal (2) G-P(sol) polarization free energy of solvation -79.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.060 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds