Wall clock time and date at job start Tue Mar 31 2020 20:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35349 * 117.00240 * 2 1 4 4 C 1.38990 * 126.40742 * 95.48287 * 3 2 1 5 5 C 1.46925 * 126.49810 * 0.04098 * 4 3 2 6 6 O 1.21663 * 119.99740 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99873 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99408 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46851 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.51106 * 59.90085 * 9 8 7 11 11 C 1.53288 * 109.51311 * 179.97438 * 9 8 7 12 12 N 1.47150 * 108.38598 * 172.22529 * 11 9 8 13 13 C 1.36939 * 120.98217 * 129.48774 * 12 11 9 14 14 H 1.08001 * 120.00031 * 206.61728 * 13 12 11 15 15 C 1.38819 * 119.99997 * 26.61245 * 13 12 11 16 16 N 1.31622 * 119.99637 * 17.13423 * 15 13 12 17 17 Si 1.86804 * 119.99868 * 197.13813 * 15 13 12 18 18 H 1.48500 * 109.47200 * 89.99889 * 17 15 13 19 19 H 1.48498 * 109.46608 * 209.99849 * 17 15 13 20 20 H 1.48495 * 109.46896 * 329.99842 * 17 15 13 21 21 C 1.47152 * 118.03886 * 309.46868 * 12 11 9 22 22 C 1.53295 * 108.38375 * 50.53193 * 21 12 11 23 23 O 1.42958 * 109.51062 * 299.75074 * 9 8 7 24 24 C 1.41467 * 107.00704 * 180.02562 * 4 3 2 25 25 N 1.30320 * 108.13696 * 0.02562 * 24 4 3 26 26 N 1.34666 * 126.40071 * 275.17586 * 3 2 1 27 27 C 1.46500 * 125.74412 * 359.97438 * 26 3 2 28 28 H 1.09000 * 109.47012 * 304.82612 * 1 2 3 29 29 H 1.09003 * 109.47165 * 64.82712 * 1 2 3 30 30 H 1.08995 * 109.47592 * 184.82808 * 1 2 3 31 31 H 0.96995 * 120.00484 * 0.02562 * 7 5 4 32 32 H 1.08999 * 109.47382 * 299.99893 * 8 7 5 33 33 H 1.08999 * 109.47053 * 60.00518 * 8 7 5 34 34 H 1.09000 * 109.46960 * 59.99498 * 10 9 8 35 35 H 1.08994 * 109.46843 * 180.02562 * 10 9 8 36 36 H 1.09006 * 109.46781 * 300.00096 * 10 9 8 37 37 H 1.09003 * 109.68676 * 291.95164 * 11 9 8 38 38 H 1.09004 * 109.67910 * 52.50671 * 11 9 8 39 39 H 0.97003 * 119.99035 * 180.02562 * 16 15 13 40 40 H 1.08991 * 109.68253 * 170.25263 * 21 12 11 41 41 H 1.09002 * 109.68012 * 290.77384 * 21 12 11 42 42 H 1.08999 * 109.51369 * 67.61987 * 22 21 12 43 43 H 1.08994 * 109.51413 * 187.72593 * 22 21 12 44 44 H 1.07999 * 125.93082 * 180.02562 * 24 4 3 45 45 H 1.08997 * 109.46815 * 93.99137 * 27 26 3 46 46 H 1.09000 * 109.46725 * 213.99148 * 27 26 3 47 47 H 1.08996 * 109.46790 * 333.99372 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.5133 1.8924 1.1135 5 6 2.4375 1.4463 2.5113 6 8 1.9225 0.3778 2.7817 7 7 2.9385 2.2208 3.4939 8 6 2.8624 1.7762 4.8878 9 6 3.4989 2.8310 5.7951 10 6 2.7515 4.1570 5.6396 11 6 3.4192 2.3671 7.2539 12 7 4.1987 3.3015 8.0813 13 6 3.6603 3.8626 9.2085 14 1 4.0192 4.8187 9.5600 15 6 2.6531 3.2026 9.8992 16 7 2.4447 1.9196 9.6920 17 14 1.5935 4.1355 11.1225 18 1 0.4077 4.6946 10.4250 19 1 1.1465 3.2115 12.1956 20 1 2.3840 5.2418 11.7194 21 6 5.5740 3.6148 7.6621 22 6 5.5487 4.0180 6.1834 23 8 4.8699 3.0091 5.4314 24 6 3.0786 3.1020 0.6458 25 7 2.9538 3.1333 -0.6510 26 7 2.3192 1.9624 -1.0795 27 6 2.0037 1.6190 -2.4683 28 1 -0.3633 0.5869 0.8436 29 1 -0.3634 0.4371 -0.9301 30 1 -0.3634 -1.0239 0.0865 31 1 3.3488 3.0729 3.2784 32 1 1.8183 1.6373 5.1684 33 1 3.3969 0.8326 4.9978 34 1 1.7069 4.0202 5.9192 35 1 3.2057 4.9080 6.2858 36 1 2.8097 4.4874 4.6024 37 1 2.3799 2.3651 7.5824 38 1 3.8349 1.3633 7.3431 39 1 1.7406 1.4587 10.1744 40 1 5.9615 4.4390 8.2607 41 1 6.2067 2.7368 7.7930 42 1 5.0247 4.9675 6.0738 43 1 6.5698 4.1213 5.8166 44 1 3.5344 3.8666 1.2573 45 1 1.0447 2.0587 -2.7423 46 1 2.7824 2.0077 -3.1245 47 1 1.9492 0.5353 -2.5712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108369089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:33 Heat of formation + Delta-G solvation = -0.659537 kcal Electronic energy + Delta-G solvation = -30380.817054 eV Core-core repulsion = 26181.597331 eV Total energy + Delta-G solvation = -4199.219723 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.75903 -39.45890 -38.43567 -38.35573 -34.80721 -34.26408 -33.68161 -31.67130 -31.23499 -30.13167 -28.01445 -27.86143 -27.06703 -26.29496 -25.37515 -23.21740 -22.73605 -21.46480 -20.95820 -20.13206 -18.86020 -18.34769 -17.10959 -16.87324 -16.67787 -16.07045 -15.72038 -15.22984 -15.05235 -14.96436 -14.80624 -14.48727 -14.31040 -13.99348 -13.88445 -13.67425 -13.45747 -13.11882 -13.05454 -12.94249 -12.68496 -12.39996 -12.20900 -11.83322 -11.58064 -11.54423 -11.16619 -10.99384 -10.79847 -10.66048 -10.52103 -10.28085 -10.22768 -9.96577 -9.73184 -9.69769 -9.48724 -9.01341 -8.93060 -8.59327 -8.52107 -6.72080 -5.83182 -3.26694 1.03304 1.83694 1.97856 3.20207 3.34645 3.41832 3.43368 3.48742 3.62001 4.13460 4.31078 4.45054 4.67754 4.69689 4.75383 4.90623 4.97796 4.98610 5.11106 5.19881 5.30363 5.35602 5.46658 5.54439 5.59221 5.72189 5.79544 5.95056 5.97505 6.07638 6.11447 6.17382 6.19933 6.36723 6.50638 6.63098 6.75547 6.82131 6.85723 7.08109 7.09705 7.21769 7.49199 7.72516 7.84078 7.92055 8.34712 8.54596 9.12342 9.75416 10.33009 11.24731 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.002656 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.158966 B =10539.113947 C =11266.324398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 O -0.295 6.295 3 C 0.318 3.682 4 C -0.289 4.289 5 C 0.589 3.411 6 O -0.544 6.544 7 N -0.713 5.713 8 C 0.143 3.857 9 C 0.078 3.922 10 C -0.162 4.162 11 C 0.160 3.840 12 N -0.591 5.591 13 C -0.254 4.254 14 H 0.068 0.932 15 C 0.004 3.996 16 N -0.900 5.900 17 Si 0.903 3.097 18 H -0.287 1.287 19 H -0.291 1.291 20 H -0.279 1.279 21 C 0.109 3.891 22 C 0.046 3.954 23 O -0.383 6.383 24 C 0.093 3.907 25 N -0.280 5.280 26 N -0.373 5.373 27 C 0.094 3.906 28 H 0.060 0.940 29 H 0.045 0.955 30 H 0.107 0.893 31 H 0.400 0.600 32 H 0.081 0.919 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.072 0.928 36 H 0.042 0.958 37 H 0.095 0.905 38 H 0.030 0.970 39 H 0.256 0.744 40 H 0.061 0.939 41 H 0.025 0.975 42 H 0.048 0.952 43 H 0.080 0.920 44 H 0.196 0.804 45 H 0.078 0.922 46 H 0.095 0.905 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.045 1.608 -22.791 22.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 O -0.204 6.204 3 C 0.145 3.855 4 C -0.305 4.305 5 C 0.376 3.624 6 O -0.422 6.422 7 N -0.364 5.364 8 C 0.019 3.981 9 C 0.037 3.963 10 C -0.219 4.219 11 C 0.034 3.966 12 N -0.314 5.314 13 C -0.383 4.383 14 H 0.086 0.914 15 C -0.195 4.195 16 N -0.544 5.544 17 Si 0.732 3.268 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.205 1.205 21 C -0.017 4.017 22 C -0.032 4.032 23 O -0.302 6.302 24 C -0.094 4.094 25 N -0.103 5.103 26 N -0.163 5.163 27 C -0.047 4.047 28 H 0.079 0.921 29 H 0.064 0.936 30 H 0.125 0.875 31 H 0.235 0.765 32 H 0.099 0.901 33 H 0.092 0.908 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.061 0.939 37 H 0.113 0.887 38 H 0.048 0.952 39 H 0.066 0.934 40 H 0.079 0.921 41 H 0.043 0.957 42 H 0.066 0.934 43 H 0.098 0.902 44 H 0.213 0.787 45 H 0.096 0.904 46 H 0.114 0.886 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -2.210 0.989 -23.768 23.891 hybrid contribution -0.732 0.623 1.418 1.713 sum -2.943 1.612 -22.350 22.600 Atomic orbital electron populations 1.23132 0.76740 1.04712 1.00936 1.86035 1.21318 1.20216 1.92820 1.19325 0.95234 0.84609 0.86382 1.20125 1.17993 0.98735 0.93634 1.16953 0.78289 0.83893 0.83273 1.90802 1.45422 1.22228 1.83769 1.45702 1.60794 1.23173 1.06722 1.21331 1.00859 0.97391 0.78488 1.22548 0.81742 0.94423 0.97575 1.22206 1.01124 0.98406 1.00171 1.21277 0.99386 0.91770 0.84207 1.43997 1.08010 1.53074 1.26343 1.19160 1.17214 1.00024 1.01945 0.91437 1.25049 1.01498 0.94952 0.98022 1.70027 1.33123 1.07050 1.44245 0.86286 0.80782 0.79033 0.80652 1.21376 1.21707 1.20451 1.21597 0.88475 0.98596 0.93074 1.23029 0.95718 0.90873 0.93574 1.87825 1.23286 1.58322 1.60811 1.23967 0.96992 0.96547 0.91906 1.77215 1.18508 1.01054 1.13498 1.48953 1.45886 1.14504 1.06967 1.21978 1.02722 1.02380 0.77634 0.92080 0.93634 0.87487 0.76549 0.90123 0.90839 0.91911 0.90866 0.93893 0.88689 0.95226 0.93440 0.92099 0.95665 0.93391 0.90198 0.78736 0.90386 0.88637 0.88932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.35 11.13 101.05 1.12 1.47 16 2 O -0.30 -3.67 9.75 -24.99 -0.24 -3.92 16 3 C 0.32 4.05 6.98 -16.03 -0.11 3.94 16 4 C -0.29 -3.95 6.15 -104.87 -0.64 -4.59 16 5 C 0.59 9.50 7.80 -12.74 -0.10 9.40 16 6 O -0.54 -10.58 16.38 -2.03 -0.03 -10.61 16 7 N -0.71 -10.67 5.15 -61.54 -0.32 -10.99 16 8 C 0.14 2.49 4.82 -4.04 -0.02 2.47 16 9 C 0.08 1.45 0.76 -90.46 -0.07 1.38 16 10 C -0.16 -2.72 7.92 37.16 0.29 -2.43 16 11 C 0.16 3.72 4.11 -3.54 -0.01 3.70 16 12 N -0.59 -14.31 2.57 -171.83 -0.44 -14.75 16 13 C -0.25 -6.73 9.64 -15.06 -0.15 -6.87 16 14 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 15 C 0.00 0.10 4.94 -17.43 -0.09 0.02 16 16 N -0.90 -25.62 11.18 55.49 0.62 -25.00 16 17 Si 0.90 21.22 29.59 -169.99 -5.03 16.19 16 18 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 21 C 0.11 2.23 6.74 -3.53 -0.02 2.20 16 22 C 0.05 0.78 6.60 37.31 0.25 1.03 16 23 O -0.38 -7.00 9.99 -35.23 -0.35 -7.35 16 24 C 0.09 1.04 11.50 -16.96 -0.20 0.85 16 25 N -0.28 -3.25 12.48 30.88 0.39 -2.87 16 26 N -0.37 -3.97 3.99 -67.67 -0.27 -4.24 16 27 C 0.09 0.55 11.41 59.85 0.68 1.24 16 28 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 29 H 0.05 0.28 8.14 -51.93 -0.42 -0.15 16 30 H 0.11 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.40 5.13 6.14 -40.82 -0.25 4.88 16 32 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 33 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 34 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 35 H 0.07 1.35 6.12 -51.93 -0.32 1.03 16 36 H 0.04 0.59 6.86 -51.93 -0.36 0.24 16 37 H 0.10 2.43 6.17 -51.93 -0.32 2.11 16 38 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 39 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 40 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 41 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.05 0.79 6.25 -51.93 -0.32 0.46 16 43 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 44 H 0.20 1.57 7.50 -52.49 -0.39 1.17 16 45 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 46 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 47 H 0.09 0.43 8.03 -51.93 -0.42 0.02 16 LS Contribution 383.65 15.07 5.78 5.78 Total: -1.00 -34.05 383.65 -5.95 -40.00 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -6.99 Total: 3.94 kcal Atomic # 6 Polarization: 12.86 SS G_CDS: 0.94 Total: 13.80 kcal Atomic # 7 Polarization: -57.82 SS G_CDS: -0.02 Total: -57.84 kcal Atomic # 8 Polarization: -21.25 SS G_CDS: -0.63 Total: -21.88 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.03 Total: 16.19 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.05 -5.95 -40.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108369089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.345 kcal (2) G-P(sol) polarization free energy of solvation -34.052 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.952 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.004 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.660 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds