Wall clock time and date at job start Tue Mar 31 2020 20:31:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35349 * 117.00240 * 2 1 4 4 C 1.38990 * 126.40742 * 95.48287 * 3 2 1 5 5 C 1.46925 * 126.49810 * 0.04098 * 4 3 2 6 6 O 1.21663 * 119.99740 * 359.97438 * 5 4 3 7 7 N 1.34774 * 119.99873 * 179.97438 * 5 4 3 8 8 C 1.46503 * 119.99408 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.46851 * 179.97438 * 8 7 5 10 10 C 1.53005 * 109.51106 * 59.90085 * 9 8 7 11 11 C 1.53288 * 109.51311 * 179.97438 * 9 8 7 12 12 N 1.47150 * 108.38598 * 172.22529 * 11 9 8 13 13 C 1.36939 * 120.98217 * 129.48774 * 12 11 9 14 14 H 1.08001 * 120.00031 * 206.61728 * 13 12 11 15 15 C 1.38819 * 119.99997 * 26.61245 * 13 12 11 16 16 N 1.31622 * 119.99637 * 17.13423 * 15 13 12 17 17 Si 1.86804 * 119.99868 * 197.13813 * 15 13 12 18 18 H 1.48500 * 109.47200 * 89.99889 * 17 15 13 19 19 H 1.48498 * 109.46608 * 209.99849 * 17 15 13 20 20 H 1.48495 * 109.46896 * 329.99842 * 17 15 13 21 21 C 1.47152 * 118.03886 * 309.46868 * 12 11 9 22 22 C 1.53295 * 108.38375 * 50.53193 * 21 12 11 23 23 O 1.42958 * 109.51062 * 299.75074 * 9 8 7 24 24 C 1.41467 * 107.00704 * 180.02562 * 4 3 2 25 25 N 1.30320 * 108.13696 * 0.02562 * 24 4 3 26 26 N 1.34666 * 126.40071 * 275.17586 * 3 2 1 27 27 C 1.46500 * 125.74412 * 359.97438 * 26 3 2 28 28 H 1.09000 * 109.47012 * 304.82612 * 1 2 3 29 29 H 1.09003 * 109.47165 * 64.82712 * 1 2 3 30 30 H 1.08995 * 109.47592 * 184.82808 * 1 2 3 31 31 H 0.96995 * 120.00484 * 0.02562 * 7 5 4 32 32 H 1.08999 * 109.47382 * 299.99893 * 8 7 5 33 33 H 1.08999 * 109.47053 * 60.00518 * 8 7 5 34 34 H 1.09000 * 109.46960 * 59.99498 * 10 9 8 35 35 H 1.08994 * 109.46843 * 180.02562 * 10 9 8 36 36 H 1.09006 * 109.46781 * 300.00096 * 10 9 8 37 37 H 1.09003 * 109.68676 * 291.95164 * 11 9 8 38 38 H 1.09004 * 109.67910 * 52.50671 * 11 9 8 39 39 H 0.97003 * 119.99035 * 180.02562 * 16 15 13 40 40 H 1.08991 * 109.68253 * 170.25263 * 21 12 11 41 41 H 1.09002 * 109.68012 * 290.77384 * 21 12 11 42 42 H 1.08999 * 109.51369 * 67.61987 * 22 21 12 43 43 H 1.08994 * 109.51413 * 187.72593 * 22 21 12 44 44 H 1.07999 * 125.93082 * 180.02562 * 24 4 3 45 45 H 1.08997 * 109.46815 * 93.99137 * 27 26 3 46 46 H 1.09000 * 109.46725 * 213.99148 * 27 26 3 47 47 H 1.08996 * 109.46790 * 333.99372 * 27 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0435 1.2059 0.0000 4 6 2.5133 1.8924 1.1135 5 6 2.4375 1.4463 2.5113 6 8 1.9225 0.3778 2.7817 7 7 2.9385 2.2208 3.4939 8 6 2.8624 1.7762 4.8878 9 6 3.4989 2.8310 5.7951 10 6 2.7515 4.1570 5.6396 11 6 3.4192 2.3671 7.2539 12 7 4.1987 3.3015 8.0813 13 6 3.6603 3.8626 9.2085 14 1 4.0192 4.8187 9.5600 15 6 2.6531 3.2026 9.8992 16 7 2.4447 1.9196 9.6920 17 14 1.5935 4.1355 11.1225 18 1 0.4077 4.6946 10.4250 19 1 1.1465 3.2115 12.1956 20 1 2.3840 5.2418 11.7194 21 6 5.5740 3.6148 7.6621 22 6 5.5487 4.0180 6.1834 23 8 4.8699 3.0091 5.4314 24 6 3.0786 3.1020 0.6458 25 7 2.9538 3.1333 -0.6510 26 7 2.3192 1.9624 -1.0795 27 6 2.0037 1.6190 -2.4683 28 1 -0.3633 0.5869 0.8436 29 1 -0.3634 0.4371 -0.9301 30 1 -0.3634 -1.0239 0.0865 31 1 3.3488 3.0729 3.2784 32 1 1.8183 1.6373 5.1684 33 1 3.3969 0.8326 4.9978 34 1 1.7069 4.0202 5.9192 35 1 3.2057 4.9080 6.2858 36 1 2.8097 4.4874 4.6024 37 1 2.3799 2.3651 7.5824 38 1 3.8349 1.3633 7.3431 39 1 1.7406 1.4587 10.1744 40 1 5.9615 4.4390 8.2607 41 1 6.2067 2.7368 7.7930 42 1 5.0247 4.9675 6.0738 43 1 6.5698 4.1213 5.8166 44 1 3.5344 3.8666 1.2573 45 1 1.0447 2.0587 -2.7423 46 1 2.7824 2.0077 -3.1245 47 1 1.9492 0.5353 -2.5712 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108369089.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:33 Heat of formation + Delta-G solvation = -26.241238 kcal Electronic energy + Delta-G solvation = -30381.926360 eV Core-core repulsion = 26181.597331 eV Total energy + Delta-G solvation = -4200.329029 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.63392 -40.91694 -39.81482 -39.21351 -36.47581 -35.83489 -34.45599 -33.20865 -33.04120 -31.05362 -29.54472 -28.80614 -27.95397 -27.74483 -26.83694 -24.95924 -23.84816 -22.81662 -22.00746 -21.28896 -20.31576 -19.43059 -18.85804 -18.01501 -17.52638 -17.39759 -16.99768 -16.76774 -16.31577 -16.09932 -15.87956 -15.68241 -15.60493 -15.52225 -15.21488 -15.01317 -14.64735 -14.60821 -14.30515 -13.96334 -13.60355 -13.58083 -13.32931 -13.13782 -12.92357 -12.88547 -12.76480 -12.48034 -12.44618 -12.41966 -12.10719 -11.91250 -11.81152 -11.35438 -11.10840 -10.93032 -10.70652 -10.50704 -10.46440 -10.14475 -9.67864 -8.68737 -7.87142 -5.34113 0.12544 1.06183 1.08198 1.47828 1.49110 1.57778 2.19890 2.34801 2.50912 2.58915 2.84353 3.27209 3.38717 3.54752 3.89558 3.97906 4.02400 4.07673 4.15912 4.18344 4.29908 4.33388 4.36045 4.47297 4.51187 4.56913 4.62115 4.63542 4.66664 4.72418 4.77003 4.85777 5.02301 5.05000 5.09631 5.17189 5.25059 5.33362 5.40748 5.46000 5.57189 5.64549 6.25083 6.32493 6.37348 6.42048 6.66585 7.09618 7.32771 7.79047 8.33396 9.18459 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019587 B = 0.002656 C = 0.002485 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1429.158966 B =10539.113947 C =11266.324398 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.315 6.315 3 C 0.315 3.685 4 C -0.319 4.319 5 C 0.590 3.410 6 O -0.586 6.586 7 N -0.699 5.699 8 C 0.153 3.847 9 C 0.095 3.905 10 C -0.153 4.153 11 C 0.168 3.832 12 N -0.607 5.607 13 C -0.258 4.258 14 H 0.074 0.926 15 C -0.050 4.050 16 N -0.936 5.936 17 Si 0.966 3.034 18 H -0.283 1.283 19 H -0.299 1.299 20 H -0.267 1.267 21 C 0.101 3.899 22 C 0.053 3.947 23 O -0.384 6.384 24 C 0.102 3.898 25 N -0.291 5.291 26 N -0.366 5.366 27 C 0.082 3.918 28 H 0.042 0.958 29 H 0.076 0.924 30 H 0.122 0.878 31 H 0.413 0.587 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.062 0.938 36 H 0.080 0.920 37 H 0.066 0.934 38 H -0.009 1.009 39 H 0.250 0.750 40 H 0.072 0.928 41 H 0.011 0.989 42 H 0.063 0.937 43 H 0.118 0.882 44 H 0.225 0.775 45 H 0.099 0.901 46 H 0.109 0.891 47 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.746 3.897 -25.247 25.605 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.224 6.224 3 C 0.140 3.860 4 C -0.335 4.335 5 C 0.379 3.621 6 O -0.468 6.468 7 N -0.351 5.351 8 C 0.028 3.972 9 C 0.054 3.946 10 C -0.211 4.211 11 C 0.041 3.959 12 N -0.331 5.331 13 C -0.387 4.387 14 H 0.092 0.908 15 C -0.246 4.246 16 N -0.582 5.582 17 Si 0.794 3.206 18 H -0.210 1.210 19 H -0.226 1.226 20 H -0.191 1.191 21 C -0.024 4.024 22 C -0.025 4.025 23 O -0.304 6.304 24 C -0.084 4.084 25 N -0.113 5.113 26 N -0.155 5.155 27 C -0.057 4.057 28 H 0.061 0.939 29 H 0.094 0.906 30 H 0.140 0.860 31 H 0.250 0.750 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.073 0.927 35 H 0.081 0.919 36 H 0.099 0.901 37 H 0.084 0.916 38 H 0.009 0.991 39 H 0.059 0.941 40 H 0.090 0.910 41 H 0.029 0.971 42 H 0.081 0.919 43 H 0.135 0.865 44 H 0.241 0.759 45 H 0.118 0.882 46 H 0.127 0.873 47 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -1.876 3.336 -26.277 26.555 hybrid contribution -0.769 -0.145 2.119 2.259 sum -2.645 3.191 -24.159 24.511 Atomic orbital electron populations 1.23338 0.74969 1.05776 1.01765 1.85989 1.23074 1.20376 1.92986 1.19456 0.94913 0.84600 0.87028 1.19994 1.20564 1.00570 0.92393 1.17315 0.77272 0.83208 0.84342 1.90774 1.47365 1.24108 1.84528 1.45464 1.60721 1.23602 1.05341 1.21003 0.99920 0.96255 0.79975 1.22172 0.82635 0.95492 0.94325 1.22117 1.00059 0.96610 1.02265 1.21039 0.97228 0.90204 0.87387 1.44253 1.09770 1.52837 1.26219 1.19509 1.16921 1.00089 1.02230 0.90848 1.25804 1.02974 0.95595 1.00200 1.70198 1.33740 1.08614 1.45679 0.85282 0.79172 0.77818 0.78285 1.21011 1.22616 1.19134 1.21828 0.86232 0.98389 0.95976 1.23109 0.97832 0.90769 0.90746 1.87837 1.22897 1.59056 1.60569 1.24361 0.96090 0.96054 0.91924 1.77197 1.18890 1.01635 1.13611 1.49274 1.44633 1.13633 1.08000 1.22397 1.04318 1.03585 0.75409 0.93871 0.90566 0.85960 0.74951 0.90955 0.92980 0.92694 0.91915 0.90139 0.91611 0.99090 0.94111 0.90982 0.97141 0.91890 0.86459 0.75905 0.88235 0.87266 0.87713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.58 11.13 113.37 1.26 1.85 16 2 O -0.31 -7.62 9.75 -79.46 -0.77 -8.39 16 3 C 0.32 7.66 6.98 84.44 0.59 8.25 16 4 C -0.32 -8.38 6.15 -20.03 -0.12 -8.50 16 5 C 0.59 18.98 7.80 86.52 0.67 19.66 16 6 O -0.59 -23.51 16.38 2.70 0.04 -23.47 16 7 N -0.70 -20.40 5.15 -466.83 -2.40 -22.80 16 8 C 0.15 5.46 4.82 86.38 0.42 5.88 16 9 C 0.09 3.50 0.76 -10.69 -0.01 3.49 16 10 C -0.15 -4.91 7.92 71.98 0.57 -4.34 16 11 C 0.17 8.12 4.11 86.35 0.35 8.48 16 12 N -0.61 -29.75 2.57 -697.55 -1.79 -31.54 16 13 C -0.26 -13.72 9.64 84.03 0.81 -12.91 16 14 H 0.07 3.76 7.89 -2.91 -0.02 3.73 16 15 C -0.05 -2.77 4.94 84.86 0.42 -2.35 16 16 N -0.94 -55.42 11.18 21.65 0.24 -55.17 16 17 Si 0.97 44.19 29.59 68.60 2.03 46.22 16 18 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 19 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 20 H -0.27 -11.54 7.11 99.48 0.71 -10.83 16 21 C 0.10 4.05 6.74 86.35 0.58 4.63 16 22 C 0.05 1.65 6.60 72.08 0.48 2.13 16 23 O -0.38 -13.39 9.99 -148.98 -1.49 -14.88 16 24 C 0.10 2.06 11.50 85.71 0.99 3.04 16 25 N -0.29 -6.02 12.48 -56.22 -0.70 -6.72 16 26 N -0.37 -6.98 3.99 -479.81 -1.91 -8.89 16 27 C 0.08 0.73 11.41 127.77 1.46 2.19 16 28 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 29 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 30 H 0.12 1.56 8.14 -2.39 -0.02 1.54 16 31 H 0.41 9.61 6.14 -92.71 -0.57 9.04 16 32 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 33 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.06 2.17 6.12 -2.39 -0.01 2.16 16 36 H 0.08 1.97 6.86 -2.38 -0.02 1.95 16 37 H 0.07 3.55 6.17 -2.39 -0.01 3.53 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 40 H 0.07 2.69 7.96 -2.39 -0.02 2.67 16 41 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 42 H 0.06 1.84 6.25 -2.39 -0.01 1.82 16 43 H 0.12 2.87 8.14 -2.39 -0.02 2.85 16 44 H 0.22 2.81 7.50 -2.91 -0.02 2.79 16 45 H 0.10 0.50 8.14 -2.39 -0.02 0.48 16 46 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.10 0.70 8.03 -2.39 -0.02 0.68 16 Total: -1.00 -76.78 383.65 2.13 -74.65 By element: Atomic # 1 Polarization: 19.10 SS G_CDS: 0.42 Total: 19.52 kcal Atomic # 6 Polarization: 23.02 SS G_CDS: 8.46 Total: 31.49 kcal Atomic # 7 Polarization: -118.57 SS G_CDS: -6.57 Total: -125.14 kcal Atomic # 8 Polarization: -44.52 SS G_CDS: -2.22 Total: -46.74 kcal Atomic # 14 Polarization: 44.19 SS G_CDS: 2.03 Total: 46.22 kcal Total: -76.78 2.13 -74.65 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108369089.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.404 kcal (2) G-P(sol) polarization free energy of solvation -76.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds