Wall clock time and date at job start Tue Mar 31 2020 20:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37017 * 125.65086 * 2 1 4 4 C 1.35145 * 107.87922 * 180.02562 * 3 2 1 5 5 C 1.46650 * 126.37998 * 179.97438 * 4 3 2 6 6 O 1.21704 * 120.00174 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00310 * 0.02721 * 5 4 3 8 8 C 1.46502 * 120.00289 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47082 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.55421 * 60.12625 * 9 8 7 11 11 C 1.53294 * 109.51225 * 180.25616 * 9 8 7 12 12 N 1.47231 * 108.40580 * 172.23190 * 11 9 8 13 13 C 1.36930 * 121.03478 * 129.45775 * 12 11 9 14 14 H 1.08002 * 120.00530 * 206.18179 * 13 12 11 15 15 C 1.38816 * 119.99608 * 26.18409 * 13 12 11 16 16 N 1.31615 * 120.00526 * 16.88476 * 15 13 12 17 17 Si 1.86806 * 119.99896 * 196.88547 * 15 13 12 18 18 H 1.48497 * 109.46975 * 59.99586 * 17 15 13 19 19 H 1.48495 * 109.47304 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47064 * 300.00118 * 17 15 13 21 21 C 1.47154 * 117.98080 * 309.48144 * 12 11 9 22 22 C 1.53298 * 108.41825 * 50.52276 * 21 12 11 23 23 O 1.42959 * 109.51185 * 300.00138 * 9 8 7 24 24 N 1.39842 * 107.23954 * 0.23934 * 4 3 2 25 25 C 1.46504 * 126.17761 * 179.75400 * 24 4 3 26 26 C 1.34617 * 125.65383 * 180.02562 * 2 1 3 27 27 O 1.21734 * 125.72428 * 359.97438 * 26 2 1 28 28 H 1.09009 * 109.47362 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47213 * 119.98052 * 1 2 3 30 30 H 1.09000 * 109.47237 * 239.97907 * 1 2 3 31 31 H 1.08006 * 126.06072 * 0.03394 * 3 2 1 32 32 H 0.97000 * 119.99622 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.46877 * 60.00024 * 8 7 5 34 34 H 1.08999 * 109.47195 * 299.99992 * 8 7 5 35 35 H 1.09004 * 109.46996 * 299.87189 * 10 9 8 36 36 H 1.08996 * 109.47344 * 59.87067 * 10 9 8 37 37 H 1.09000 * 109.46808 * 179.87595 * 10 9 8 38 38 H 1.09001 * 109.68145 * 291.94467 * 11 9 8 39 39 H 1.09001 * 109.68444 * 52.49853 * 11 9 8 40 40 H 0.97002 * 120.00383 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.68310 * 290.77594 * 21 12 11 42 42 H 1.09005 * 109.67869 * 170.26376 * 21 12 11 43 43 H 1.09001 * 109.51044 * 67.59999 * 22 21 12 44 44 H 1.09000 * 109.51036 * 187.70217 * 22 21 12 45 45 H 1.09002 * 109.46979 * 90.00183 * 25 24 4 46 46 H 1.09002 * 109.47091 * 209.99675 * 25 24 4 47 47 H 1.08994 * 109.47250 * 330.00102 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7009 -0.0006 5 6 4.7392 1.5597 -0.0013 6 8 5.8498 1.0618 -0.0023 7 7 4.6020 2.9005 -0.0009 8 6 5.7895 3.7584 -0.0011 9 6 5.3581 5.2264 0.0001 10 6 4.5254 5.5144 1.2510 11 6 6.6000 6.1250 -0.0065 12 7 6.1642 7.5188 -0.1941 13 6 6.5980 8.5127 0.6420 14 1 5.9963 9.3978 0.7865 15 6 7.8112 8.3825 1.3039 16 7 8.6919 7.4940 0.8952 17 14 8.1938 9.4685 2.7749 18 1 7.1800 9.2402 3.8357 19 1 9.5423 9.1343 3.2995 20 1 8.1630 10.8938 2.3593 21 6 5.2477 7.8117 -1.3075 22 6 4.0716 6.8309 -1.2375 23 8 4.5763 5.4952 -1.1662 24 7 3.5376 -0.6975 -0.0065 25 6 4.7120 -1.5732 -0.0142 26 6 2.2496 -1.0938 -0.0005 27 8 1.8609 -2.2474 -0.0006 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5135 -0.8902 30 1 -0.3634 -0.5142 0.8898 31 1 1.9247 2.1389 0.0005 32 1 3.7169 3.2973 -0.0005 33 1 6.3846 3.5549 -0.8913 34 1 6.3852 3.5545 0.8886 35 1 3.6403 4.8783 1.2526 36 1 5.1220 5.3092 2.1398 37 1 4.2207 6.5609 1.2515 38 1 7.1269 6.0301 0.9429 39 1 7.2597 5.8336 -0.8238 40 1 9.5396 7.4028 1.3580 41 1 5.7712 7.6901 -2.2557 42 1 4.8790 8.8338 -1.2202 43 1 3.4738 7.0420 -0.3508 44 1 3.4530 6.9402 -2.1282 45 1 5.0067 -1.7948 1.0115 46 1 4.4695 -2.5017 -0.5312 47 1 5.5335 -1.0747 -0.5287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001108427122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:16 Heat of formation + Delta-G solvation = -24.269036 kcal Electronic energy + Delta-G solvation = -30416.518494 eV Core-core repulsion = 26216.274986 eV Total energy + Delta-G solvation = -4200.243508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.65300 -39.77539 -38.77406 -36.97279 -35.71391 -34.95106 -34.40004 -32.15878 -31.31968 -30.62347 -28.47233 -28.00906 -26.50233 -26.29672 -25.50625 -23.39582 -23.23649 -21.42447 -20.80235 -20.46867 -18.89540 -18.17790 -17.08757 -17.01699 -16.78531 -16.06580 -15.73978 -15.48245 -15.24389 -15.03453 -14.78719 -14.50265 -14.34170 -14.24496 -14.08614 -13.78340 -13.55330 -13.12318 -13.10044 -12.94712 -12.87141 -12.60842 -12.37931 -12.02745 -11.71074 -11.65665 -11.26020 -11.07521 -10.87077 -10.77913 -10.73245 -10.38023 -10.32581 -10.18747 -10.09374 -9.94802 -9.61731 -9.14669 -9.00129 -8.59002 -8.02208 -6.80249 -5.89833 -3.33248 1.14888 1.91820 2.61461 2.73144 3.18118 3.30848 3.37666 3.38256 3.47365 4.15726 4.33128 4.38886 4.65652 4.76793 4.84571 4.91523 5.02204 5.07415 5.17711 5.28182 5.30036 5.38599 5.44124 5.57126 5.59789 5.74924 5.84232 5.86639 5.92669 6.00337 6.06184 6.07763 6.22519 6.34155 6.39948 6.46951 6.58499 6.68285 6.75996 6.95597 7.00573 7.39888 7.48622 7.65321 7.79304 7.98429 8.15532 8.27461 9.05299 9.68368 10.25292 11.18207 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.002625 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.336348 B =10663.744459 C =11253.879516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.524 5.524 3 C 0.051 3.949 4 C -0.029 4.029 5 C 0.587 3.413 6 O -0.538 6.538 7 N -0.703 5.703 8 C 0.142 3.858 9 C 0.077 3.923 10 C -0.162 4.162 11 C 0.160 3.840 12 N -0.590 5.590 13 C -0.256 4.256 14 H 0.068 0.932 15 C 0.005 3.995 16 N -0.901 5.901 17 Si 0.903 3.097 18 H -0.283 1.283 19 H -0.290 1.290 20 H -0.282 1.282 21 C 0.108 3.892 22 C 0.046 3.954 23 O -0.384 6.384 24 N -0.510 5.510 25 C 0.100 3.900 26 C 0.647 3.353 27 O -0.568 6.568 28 H 0.092 0.908 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.191 0.809 32 H 0.402 0.598 33 H 0.078 0.922 34 H 0.085 0.915 35 H 0.041 0.959 36 H 0.063 0.937 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.030 0.970 40 H 0.257 0.743 41 H 0.026 0.974 42 H 0.061 0.939 43 H 0.048 0.952 44 H 0.080 0.920 45 H 0.068 0.932 46 H 0.080 0.920 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.197 -10.410 -1.639 18.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.241 5.241 3 C -0.079 4.079 4 C -0.138 4.138 5 C 0.372 3.628 6 O -0.416 6.416 7 N -0.354 5.354 8 C 0.019 3.981 9 C 0.036 3.964 10 C -0.220 4.220 11 C 0.033 3.967 12 N -0.314 5.314 13 C -0.385 4.385 14 H 0.086 0.914 15 C -0.194 4.194 16 N -0.545 5.545 17 Si 0.733 3.267 18 H -0.210 1.210 19 H -0.215 1.215 20 H -0.209 1.209 21 C -0.018 4.018 22 C -0.032 4.032 23 O -0.304 6.304 24 N -0.229 5.229 25 C -0.041 4.041 26 C 0.350 3.650 27 O -0.446 6.446 28 H 0.111 0.889 29 H 0.095 0.905 30 H 0.095 0.905 31 H 0.208 0.792 32 H 0.238 0.762 33 H 0.096 0.904 34 H 0.104 0.896 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.093 0.907 38 H 0.115 0.885 39 H 0.048 0.952 40 H 0.067 0.933 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.067 0.933 44 H 0.099 0.901 45 H 0.087 0.913 46 H 0.099 0.901 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -14.509 -11.804 -1.710 18.783 hybrid contribution -0.119 1.133 0.913 1.460 sum -14.628 -10.672 -0.797 18.125 Atomic orbital electron populations 1.21841 0.74551 1.04146 1.03825 1.44944 1.07957 1.06073 1.65158 1.22095 0.87936 0.93391 1.04471 1.19773 0.94082 0.84127 1.15797 1.16700 0.86725 0.82005 0.77323 1.90824 1.25903 1.74236 1.50676 1.45660 1.11144 1.04560 1.74066 1.21440 0.86471 0.86839 1.03356 1.22568 0.94937 0.93476 0.85385 1.22215 0.99080 1.02770 0.97912 1.21305 0.90213 0.82366 1.02824 1.43999 1.53755 1.03396 1.30232 1.19106 1.00421 0.99751 1.19255 0.91446 1.25035 0.94946 0.98894 1.00552 1.69993 1.07030 1.37437 1.40045 0.86363 0.77247 0.80219 0.82902 1.20964 1.21529 1.20854 1.21599 0.91413 0.96920 0.91853 1.23039 0.96361 0.83393 1.00373 1.87807 1.69910 1.29693 1.42979 1.45203 1.07008 1.04960 1.65751 1.21896 0.85315 0.93430 1.03472 1.16119 0.80829 0.84858 0.83207 1.91034 1.76598 1.16325 1.60642 0.88934 0.90461 0.90478 0.79201 0.76234 0.90405 0.89642 0.93978 0.91774 0.90728 0.88492 0.95174 0.93316 0.95634 0.92054 0.93346 0.90139 0.91341 0.90107 0.88060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.57 11.03 59.85 0.66 1.23 16 2 N -0.52 -5.11 3.12 -128.78 -0.40 -5.51 16 3 C 0.05 0.44 10.86 -16.33 -0.18 0.26 16 4 C -0.03 -0.34 6.88 -81.91 -0.56 -0.90 16 5 C 0.59 7.92 7.78 -12.87 -0.10 7.82 16 6 O -0.54 -8.95 14.83 5.19 0.08 -8.87 16 7 N -0.70 -8.70 5.14 -61.62 -0.32 -9.01 16 8 C 0.14 2.17 4.82 -4.04 -0.02 2.15 16 9 C 0.08 1.30 0.76 -90.47 -0.07 1.23 16 10 C -0.16 -2.47 7.92 37.16 0.29 -2.17 16 11 C 0.16 3.48 4.12 -3.49 -0.01 3.47 16 12 N -0.59 -13.61 2.57 -171.76 -0.44 -14.05 16 13 C -0.26 -6.54 9.65 -15.06 -0.15 -6.68 16 14 H 0.07 1.68 7.88 -52.49 -0.41 1.27 16 15 C 0.00 0.13 4.95 -17.43 -0.09 0.04 16 16 N -0.90 -24.82 11.14 55.49 0.62 -24.20 16 17 Si 0.90 20.62 29.59 -169.99 -5.03 15.59 16 18 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 19 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 C 0.11 2.09 6.73 -3.53 -0.02 2.06 16 22 C 0.05 0.72 6.60 37.31 0.25 0.97 16 23 O -0.38 -6.32 9.97 -35.23 -0.35 -6.67 16 24 N -0.51 -6.57 3.21 -124.83 -0.40 -6.97 16 25 C 0.10 1.14 10.57 59.85 0.63 1.77 16 26 C 0.65 8.74 8.49 -87.08 -0.74 8.00 16 27 O -0.57 -9.36 17.66 5.16 0.09 -9.27 16 28 H 0.09 0.24 8.07 -51.92 -0.42 -0.17 16 29 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.19 0.88 7.37 -52.48 -0.39 0.49 16 32 H 0.40 4.03 6.06 -40.82 -0.25 3.79 16 33 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 34 H 0.09 1.34 8.14 -51.93 -0.42 0.91 16 35 H 0.04 0.50 6.88 -51.93 -0.36 0.14 16 36 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 37 H 0.07 1.27 6.11 -51.93 -0.32 0.95 16 38 H 0.10 2.36 6.14 -51.93 -0.32 2.04 16 39 H 0.03 0.73 8.14 -51.93 -0.42 0.30 16 40 H 0.26 6.90 8.31 -40.82 -0.34 6.56 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.12 7.96 -51.93 -0.41 0.71 16 43 H 0.05 0.72 6.25 -51.93 -0.32 0.40 16 44 H 0.08 1.04 8.14 -51.93 -0.42 0.61 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 46 H 0.08 0.84 8.08 -51.93 -0.42 0.42 16 47 H 0.10 1.21 6.45 -51.93 -0.34 0.87 16 LS Contribution 378.55 15.07 5.70 5.70 Total: -1.00 -33.71 378.55 -7.45 -41.15 By element: Atomic # 1 Polarization: 9.77 SS G_CDS: -6.89 Total: 2.88 kcal Atomic # 6 Polarization: 19.34 SS G_CDS: -0.11 Total: 19.24 kcal Atomic # 7 Polarization: -58.81 SS G_CDS: -0.94 Total: -59.75 kcal Atomic # 8 Polarization: -24.63 SS G_CDS: -0.18 Total: -24.81 kcal Atomic # 14 Polarization: 20.62 SS G_CDS: -5.03 Total: 15.59 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.71 -7.45 -41.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108427122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.885 kcal (2) G-P(sol) polarization free energy of solvation -33.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds