Wall clock time and date at job start Tue Mar 31 2020 20:31:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.37017 * 125.65086 * 2 1 4 4 C 1.35145 * 107.87922 * 180.02562 * 3 2 1 5 5 C 1.46650 * 126.37998 * 179.97438 * 4 3 2 6 6 O 1.21704 * 120.00174 * 180.02562 * 5 4 3 7 7 N 1.34774 * 120.00310 * 0.02721 * 5 4 3 8 8 C 1.46502 * 120.00289 * 179.97438 * 7 5 4 9 9 C 1.53001 * 109.47082 * 180.02562 * 8 7 5 10 10 C 1.53000 * 109.55421 * 60.12625 * 9 8 7 11 11 C 1.53294 * 109.51225 * 180.25616 * 9 8 7 12 12 N 1.47231 * 108.40580 * 172.23190 * 11 9 8 13 13 C 1.36930 * 121.03478 * 129.45775 * 12 11 9 14 14 H 1.08002 * 120.00530 * 206.18179 * 13 12 11 15 15 C 1.38816 * 119.99608 * 26.18409 * 13 12 11 16 16 N 1.31615 * 120.00526 * 16.88476 * 15 13 12 17 17 Si 1.86806 * 119.99896 * 196.88547 * 15 13 12 18 18 H 1.48497 * 109.46975 * 59.99586 * 17 15 13 19 19 H 1.48495 * 109.47304 * 179.97438 * 17 15 13 20 20 H 1.48504 * 109.47064 * 300.00118 * 17 15 13 21 21 C 1.47154 * 117.98080 * 309.48144 * 12 11 9 22 22 C 1.53298 * 108.41825 * 50.52276 * 21 12 11 23 23 O 1.42959 * 109.51185 * 300.00138 * 9 8 7 24 24 N 1.39842 * 107.23954 * 0.23934 * 4 3 2 25 25 C 1.46504 * 126.17761 * 179.75400 * 24 4 3 26 26 C 1.34617 * 125.65383 * 180.02562 * 2 1 3 27 27 O 1.21734 * 125.72428 * 359.97438 * 26 2 1 28 28 H 1.09009 * 109.47362 * 359.97438 * 1 2 3 29 29 H 1.09002 * 109.47213 * 119.98052 * 1 2 3 30 30 H 1.09000 * 109.47237 * 239.97907 * 1 2 3 31 31 H 1.08006 * 126.06072 * 0.03394 * 3 2 1 32 32 H 0.97000 * 119.99622 * 359.97438 * 7 5 4 33 33 H 1.09002 * 109.46877 * 60.00024 * 8 7 5 34 34 H 1.08999 * 109.47195 * 299.99992 * 8 7 5 35 35 H 1.09004 * 109.46996 * 299.87189 * 10 9 8 36 36 H 1.08996 * 109.47344 * 59.87067 * 10 9 8 37 37 H 1.09000 * 109.46808 * 179.87595 * 10 9 8 38 38 H 1.09001 * 109.68145 * 291.94467 * 11 9 8 39 39 H 1.09001 * 109.68444 * 52.49853 * 11 9 8 40 40 H 0.97002 * 120.00383 * 180.02562 * 16 15 13 41 41 H 1.08997 * 109.68310 * 290.77594 * 21 12 11 42 42 H 1.09005 * 109.67869 * 170.26376 * 21 12 11 43 43 H 1.09001 * 109.51044 * 67.59999 * 22 21 12 44 44 H 1.09000 * 109.51036 * 187.70217 * 22 21 12 45 45 H 1.09002 * 109.46979 * 90.00183 * 25 24 4 46 46 H 1.09002 * 109.47091 * 209.99675 * 25 24 4 47 47 H 1.08994 * 109.47250 * 330.00102 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2636 1.1134 0.0000 4 6 3.5505 0.7009 -0.0006 5 6 4.7392 1.5597 -0.0013 6 8 5.8498 1.0618 -0.0023 7 7 4.6020 2.9005 -0.0009 8 6 5.7895 3.7584 -0.0011 9 6 5.3581 5.2264 0.0001 10 6 4.5254 5.5144 1.2510 11 6 6.6000 6.1250 -0.0065 12 7 6.1642 7.5188 -0.1941 13 6 6.5980 8.5127 0.6420 14 1 5.9963 9.3978 0.7865 15 6 7.8112 8.3825 1.3039 16 7 8.6919 7.4940 0.8952 17 14 8.1938 9.4685 2.7749 18 1 7.1800 9.2402 3.8357 19 1 9.5423 9.1343 3.2995 20 1 8.1630 10.8938 2.3593 21 6 5.2477 7.8117 -1.3075 22 6 4.0716 6.8309 -1.2375 23 8 4.5763 5.4952 -1.1662 24 7 3.5376 -0.6975 -0.0065 25 6 4.7120 -1.5732 -0.0142 26 6 2.2496 -1.0938 -0.0005 27 8 1.8609 -2.2474 -0.0006 28 1 -0.3634 1.0277 0.0005 29 1 -0.3634 -0.5135 -0.8902 30 1 -0.3634 -0.5142 0.8898 31 1 1.9247 2.1389 0.0005 32 1 3.7169 3.2973 -0.0005 33 1 6.3846 3.5549 -0.8913 34 1 6.3852 3.5545 0.8886 35 1 3.6403 4.8783 1.2526 36 1 5.1220 5.3092 2.1398 37 1 4.2207 6.5609 1.2515 38 1 7.1269 6.0301 0.9429 39 1 7.2597 5.8336 -0.8238 40 1 9.5396 7.4028 1.3580 41 1 5.7712 7.6901 -2.2557 42 1 4.8790 8.8338 -1.2202 43 1 3.4738 7.0420 -0.3508 44 1 3.4530 6.9402 -2.1282 45 1 5.0067 -1.7948 1.0115 46 1 4.4695 -2.5017 -0.5312 47 1 5.5335 -1.0747 -0.5287 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001108427122.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:31:15 Heat of formation + Delta-G solvation = -48.238203 kcal Electronic energy + Delta-G solvation = -30417.557875 eV Core-core repulsion = 26216.274986 eV Total energy + Delta-G solvation = -4201.282889 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.52708 -41.01794 -40.04327 -38.00627 -36.70337 -36.29495 -35.82216 -33.41227 -33.15195 -31.48594 -29.55092 -29.29611 -27.93813 -27.24983 -26.77832 -24.94348 -24.27711 -22.85311 -21.77667 -21.49207 -20.28750 -19.21349 -18.81128 -17.90011 -17.74640 -17.38608 -16.91560 -16.80824 -16.38677 -16.08800 -16.04046 -15.83292 -15.51954 -15.41105 -15.20768 -15.00211 -14.85558 -14.59545 -14.35169 -14.02312 -13.87771 -13.44521 -13.36673 -13.19351 -13.13423 -12.85438 -12.71938 -12.59448 -12.46707 -12.39381 -12.15212 -11.88704 -11.82897 -11.79287 -11.19276 -11.01188 -10.94988 -10.70123 -10.44280 -10.15703 -8.90754 -8.67121 -7.86143 -5.32240 0.31485 1.10666 1.49041 1.50897 1.57503 1.65021 1.80500 2.19398 2.49496 2.58099 2.85975 3.28587 3.54306 3.59357 3.91746 3.97142 4.04484 4.10315 4.16550 4.21260 4.33020 4.39934 4.49813 4.51045 4.54205 4.64772 4.68863 4.72098 4.79368 4.82006 4.86764 4.96020 5.05255 5.11616 5.19436 5.24088 5.28005 5.33866 5.45562 5.60219 5.61149 5.66094 6.10423 6.33498 6.43363 6.52800 7.03257 7.11309 7.16951 7.81117 8.34388 9.19055 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.019807 B = 0.002625 C = 0.002487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1413.336348 B =10663.744459 C =11253.879516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.516 5.516 3 C 0.099 3.901 4 C -0.070 4.070 5 C 0.592 3.408 6 O -0.579 6.579 7 N -0.687 5.687 8 C 0.153 3.847 9 C 0.095 3.905 10 C -0.155 4.155 11 C 0.166 3.834 12 N -0.607 5.607 13 C -0.258 4.258 14 H 0.073 0.927 15 C -0.049 4.049 16 N -0.936 5.936 17 Si 0.964 3.036 18 H -0.274 1.274 19 H -0.299 1.299 20 H -0.277 1.277 21 C 0.100 3.900 22 C 0.054 3.946 23 O -0.382 6.382 24 N -0.518 5.518 25 C 0.100 3.900 26 C 0.631 3.369 27 O -0.609 6.609 28 H 0.136 0.864 29 H 0.077 0.923 30 H 0.077 0.923 31 H 0.243 0.757 32 H 0.418 0.582 33 H 0.058 0.942 34 H 0.077 0.923 35 H 0.085 0.915 36 H 0.053 0.947 37 H 0.060 0.940 38 H 0.066 0.934 39 H -0.008 1.008 40 H 0.250 0.750 41 H 0.010 0.990 42 H 0.070 0.930 43 H 0.064 0.936 44 H 0.119 0.881 45 H 0.071 0.929 46 H 0.084 0.916 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.066 -9.316 -1.350 21.263 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.231 5.231 3 C -0.032 4.032 4 C -0.178 4.178 5 C 0.380 3.620 6 O -0.460 6.460 7 N -0.339 5.339 8 C 0.029 3.971 9 C 0.054 3.946 10 C -0.212 4.212 11 C 0.039 3.961 12 N -0.331 5.331 13 C -0.387 4.387 14 H 0.091 0.909 15 C -0.244 4.244 16 N -0.582 5.582 17 Si 0.792 3.208 18 H -0.200 1.200 19 H -0.226 1.226 20 H -0.203 1.203 21 C -0.026 4.026 22 C -0.023 4.023 23 O -0.301 6.301 24 N -0.238 5.238 25 C -0.041 4.041 26 C 0.333 3.667 27 O -0.490 6.490 28 H 0.154 0.846 29 H 0.096 0.904 30 H 0.096 0.904 31 H 0.259 0.741 32 H 0.256 0.744 33 H 0.077 0.923 34 H 0.095 0.905 35 H 0.104 0.896 36 H 0.073 0.927 37 H 0.079 0.921 38 H 0.085 0.915 39 H 0.010 0.990 40 H 0.059 0.941 41 H 0.028 0.972 42 H 0.088 0.912 43 H 0.083 0.917 44 H 0.137 0.863 45 H 0.090 0.910 46 H 0.103 0.897 47 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -18.460 -10.663 -1.436 21.367 hybrid contribution 1.019 0.847 0.729 1.513 sum -17.441 -9.816 -0.706 20.026 Atomic orbital electron populations 1.22247 0.71938 1.07083 1.03963 1.45227 1.09402 1.05247 1.63192 1.22882 0.86324 0.94806 0.99150 1.19564 0.94624 0.83403 1.20188 1.16872 0.86787 0.82123 0.76260 1.90811 1.27700 1.74910 1.52576 1.45323 1.10817 1.03929 1.73875 1.21076 0.87341 0.86569 1.02159 1.22168 0.92852 0.92840 0.86778 1.22139 1.00131 1.02814 0.96148 1.21087 0.92106 0.83295 0.99619 1.44260 1.54172 1.03423 1.31254 1.19457 1.00132 1.00182 1.18968 0.90909 1.25749 0.95119 1.00486 1.03089 1.70166 1.07266 1.39463 1.41290 0.85398 0.76508 0.78744 0.80147 1.19986 1.22583 1.20317 1.21844 0.92014 0.98948 0.89775 1.23097 0.94756 0.81482 1.02975 1.87823 1.69365 1.30228 1.42704 1.45303 1.07095 1.05777 1.65577 1.21861 0.85092 0.93515 1.03612 1.16383 0.81268 0.85271 0.83780 1.90989 1.77308 1.18116 1.62602 0.84566 0.90424 0.90412 0.74083 0.74366 0.92323 0.90529 0.89587 0.92747 0.92076 0.91550 0.99044 0.94129 0.97207 0.91195 0.91743 0.86338 0.91034 0.89714 0.88957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.03 127.77 1.41 2.06 16 2 N -0.52 -8.25 3.12 -679.64 -2.12 -10.37 16 3 C 0.10 1.24 10.86 83.17 0.90 2.14 16 4 C -0.07 -1.49 6.88 39.35 0.27 -1.22 16 5 C 0.59 15.20 7.78 86.44 0.67 15.87 16 6 O -0.58 -19.57 14.83 -4.36 -0.06 -19.64 16 7 N -0.69 -15.28 5.14 -467.10 -2.40 -17.68 16 8 C 0.15 4.60 4.82 86.38 0.42 5.02 16 9 C 0.09 3.05 0.76 -10.69 -0.01 3.05 16 10 C -0.15 -4.27 7.92 71.98 0.57 -3.70 16 11 C 0.17 7.44 4.12 86.34 0.36 7.79 16 12 N -0.61 -28.09 2.57 -697.32 -1.79 -29.88 16 13 C -0.26 -13.16 9.65 84.04 0.81 -12.35 16 14 H 0.07 3.57 7.88 -2.91 -0.02 3.55 16 15 C -0.05 -2.60 4.95 84.86 0.42 -2.18 16 16 N -0.94 -53.59 11.14 21.65 0.24 -53.35 16 17 Si 0.96 42.83 29.59 68.60 2.03 44.86 16 18 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.30 -13.67 7.11 99.48 0.71 -12.96 16 20 H -0.28 -11.97 7.11 99.48 0.71 -11.27 16 21 C 0.10 3.70 6.73 86.35 0.58 4.28 16 22 C 0.05 1.48 6.60 72.08 0.48 1.96 16 23 O -0.38 -11.41 9.97 -148.98 -1.49 -12.90 16 24 N -0.52 -13.01 3.21 -667.05 -2.14 -15.15 16 25 C 0.10 2.37 10.57 127.77 1.35 3.72 16 26 C 0.63 16.27 8.49 179.11 1.52 17.79 16 27 O -0.61 -20.02 17.66 -4.46 -0.08 -20.10 16 28 H 0.14 -0.15 8.07 -2.38 -0.02 -0.17 16 29 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 31 H 0.24 0.36 7.37 -2.91 -0.02 0.34 16 32 H 0.42 6.35 6.06 -92.71 -0.56 5.79 16 33 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.08 2.45 8.14 -2.39 -0.02 2.43 16 35 H 0.09 1.60 6.88 -2.38 -0.02 1.59 16 36 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 37 H 0.06 1.88 6.11 -2.39 -0.01 1.87 16 38 H 0.07 3.38 6.14 -2.39 -0.01 3.37 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 41 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.07 2.44 7.96 -2.38 -0.02 2.42 16 43 H 0.06 1.62 6.25 -2.39 -0.01 1.60 16 44 H 0.12 2.42 8.14 -2.39 -0.02 2.40 16 45 H 0.07 1.59 8.14 -2.39 -0.02 1.57 16 46 H 0.08 1.86 8.08 -2.39 -0.02 1.84 16 47 H 0.09 2.33 6.45 -2.39 -0.02 2.31 16 Total: -1.00 -78.64 378.55 2.37 -76.27 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.44 Total: 13.72 kcal Atomic # 6 Polarization: 34.47 SS G_CDS: 9.75 Total: 44.22 kcal Atomic # 7 Polarization: -118.22 SS G_CDS: -8.22 Total: -126.44 kcal Atomic # 8 Polarization: -51.01 SS G_CDS: -1.63 Total: -52.63 kcal Atomic # 14 Polarization: 42.83 SS G_CDS: 2.03 Total: 44.86 kcal Total: -78.64 2.37 -76.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001108427122.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.034 kcal (2) G-P(sol) polarization free energy of solvation -78.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.610 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.272 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds