Wall clock time and date at job start Tue Mar 31 2020 20:28:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 110.86135 * 2 1 4 4 O 1.21277 * 120.00647 * 122.52991 * 3 2 1 5 5 N 1.34780 * 119.99357 * 302.53973 * 3 2 1 6 6 C 1.47073 * 120.88663 * 355.29278 * 5 3 2 7 7 C 1.53239 * 108.52188 * 231.16739 * 6 5 3 8 8 N 1.46900 * 109.33993 * 306.16598 * 7 6 5 9 9 C 1.46894 * 111.00544 * 187.25116 * 8 7 6 10 10 C 1.50702 * 109.47621 * 170.00017 * 9 8 7 11 11 O 1.21288 * 119.99614 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00152 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99702 * 179.72470 * 12 10 9 14 14 H 1.07995 * 120.00620 * 0.27380 * 13 12 10 15 15 C 1.38948 * 119.99843 * 180.27228 * 13 12 10 16 16 N 1.31410 * 120.00131 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00202 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46706 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47103 * 120.00131 * 17 15 13 20 20 H 1.48501 * 109.47193 * 240.00090 * 17 15 13 21 21 C 1.46911 * 111.26745 * 63.10388 * 8 7 6 22 22 C 1.47086 * 120.87833 * 175.27033 * 5 3 2 23 23 C 1.54481 * 110.96781 * 123.78843 * 2 1 3 24 24 N 1.46765 * 105.47423 * 143.57168 * 23 2 1 25 25 C 1.34418 * 111.30170 * 342.98419 * 24 23 2 26 26 O 1.21273 * 124.94597 * 180.37035 * 25 24 23 27 27 C 1.51289 * 110.11210 * 0.40728 * 25 24 23 28 28 H 1.09003 * 109.47397 * 66.17746 * 1 2 3 29 29 H 1.08998 * 109.47436 * 186.18063 * 1 2 3 30 30 H 1.09008 * 109.47147 * 306.18086 * 1 2 3 31 31 H 1.08996 * 109.63249 * 111.45273 * 6 5 3 32 32 H 1.09004 * 109.78395 * 350.96294 * 6 5 3 33 33 H 1.08998 * 109.49525 * 186.20531 * 7 6 5 34 34 H 1.09004 * 109.49791 * 66.12307 * 7 6 5 35 35 H 1.09006 * 109.46556 * 50.00179 * 9 8 7 36 36 H 1.09000 * 109.47343 * 290.00772 * 9 8 7 37 37 H 0.97000 * 119.99881 * 359.97438 * 12 10 9 38 38 H 0.97003 * 120.00324 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.49093 * 56.85745 * 21 8 7 40 40 H 1.09002 * 109.48894 * 176.93505 * 21 8 7 41 41 H 1.08996 * 109.62799 * 248.54547 * 22 5 3 42 42 H 1.09004 * 109.62669 * 8.92958 * 22 5 3 43 43 H 1.09007 * 110.24567 * 262.56805 * 23 2 1 44 44 H 1.09000 * 110.25001 * 24.48390 * 23 2 1 45 45 H 0.96996 * 124.35042 * 163.00303 * 24 23 2 46 46 H 1.09001 * 110.48394 * 257.57294 * 27 25 24 47 47 H 1.09006 * 110.48316 * 134.93523 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0666 1.4082 0.0000 4 8 2.8103 1.7739 0.8855 5 7 1.7198 2.2614 -0.9841 6 6 0.9031 1.8107 -2.1211 7 6 1.6029 2.2282 -3.4189 8 7 1.8743 3.6715 -3.3826 9 6 2.3879 4.1433 -4.6755 10 6 2.4220 5.6499 -4.6829 11 8 2.0542 6.2696 -3.7074 12 7 2.8603 6.3086 -5.7740 13 6 2.8860 7.6793 -5.7828 14 1 2.5593 8.2312 -4.9139 15 6 3.3325 8.3586 -6.9097 16 7 3.7306 7.6871 -7.9668 17 14 3.3669 10.2263 -6.9220 18 1 2.8708 10.7390 -5.6197 19 1 4.7591 10.6943 -7.1410 20 1 2.4976 10.7302 -8.0154 21 6 2.7985 4.0127 -2.2928 22 6 2.1477 3.6682 -0.9490 23 6 2.0827 -0.8022 1.1989 24 7 3.2856 -1.4771 0.6972 25 6 3.3096 -1.4973 -0.6466 26 8 4.1864 -1.9981 -1.3183 27 6 2.0841 -0.8033 -1.1993 28 1 -0.3634 0.4151 -0.9401 29 1 -0.3634 -1.0217 0.1106 30 1 -0.3634 0.6067 0.8295 31 1 -0.0821 2.2741 -2.0709 32 1 0.7994 0.7259 -2.0938 33 1 0.9595 2.0003 -4.2687 34 1 2.5422 1.6839 -3.5171 35 1 1.7369 3.7906 -5.4755 36 1 3.3951 3.7562 -4.8295 37 1 3.1541 5.8130 -6.5543 38 1 4.0420 8.1613 -8.7537 39 1 3.7211 3.4434 -2.4068 40 1 3.0221 5.0790 -2.3261 41 1 1.2821 4.3102 -0.7861 42 1 2.8672 3.8121 -0.1429 43 1 2.3412 -0.1289 2.0163 44 1 1.3487 -1.5356 1.5327 45 1 3.9745 -1.8598 1.2627 46 1 1.3517 -1.5357 -1.5390 47 1 2.3600 -0.1326 -2.0131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113137127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:21 Heat of formation + Delta-G solvation = -78.009616 kcal Electronic energy + Delta-G solvation = -30377.446927 eV Core-core repulsion = 26174.873053 eV Total energy + Delta-G solvation = -4202.573874 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.64799 -39.72226 -38.67958 -37.42146 -36.67517 -34.85299 -33.85349 -33.24706 -31.28881 -30.99148 -29.01430 -28.89526 -26.60622 -25.92782 -24.24588 -23.88929 -22.77508 -21.14469 -20.59156 -19.32263 -18.94533 -17.93264 -17.82342 -17.16724 -16.50251 -16.09279 -15.84442 -15.42020 -15.34669 -15.04409 -14.85096 -14.58947 -14.39020 -14.20781 -13.99223 -13.88562 -13.66165 -13.58178 -13.36525 -13.01735 -12.72474 -12.51274 -12.43726 -12.10151 -12.06690 -11.63413 -11.56496 -11.51560 -11.29462 -11.16447 -11.01226 -10.89384 -10.36106 -10.25102 -10.20486 -9.92015 -9.51339 -9.47309 -8.96560 -8.43080 -8.02681 -7.93743 -6.44431 -3.85349 2.24969 2.30773 2.68275 3.02028 3.14574 3.25603 3.32408 3.70868 3.79505 3.86600 3.91983 3.96278 4.20136 4.28590 4.56635 4.73578 4.85385 4.94138 4.94560 5.02577 5.06954 5.11812 5.13137 5.21622 5.22958 5.29210 5.35606 5.38914 5.53122 5.61230 5.63795 5.71663 5.78951 5.85873 6.04181 6.16613 6.21757 6.40875 6.44396 6.64673 7.05200 7.24652 7.25362 7.52982 7.88642 7.90533 8.03429 8.58134 9.15235 9.51131 10.02148 10.73268 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.002311 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.198132 B =12113.973526 C =12433.709643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C 0.527 3.473 4 O -0.536 6.536 5 N -0.604 5.604 6 C 0.100 3.900 7 C 0.035 3.965 8 N -0.513 5.513 9 C 0.046 3.954 10 C 0.443 3.557 11 O -0.578 6.578 12 N -0.563 5.563 13 C -0.298 4.298 14 H 0.104 0.896 15 C 0.022 3.978 16 N -0.901 5.901 17 Si 0.929 3.071 18 H -0.268 1.268 19 H -0.282 1.282 20 H -0.281 1.281 21 C 0.039 3.961 22 C 0.120 3.880 23 C 0.119 3.881 24 N -0.726 5.726 25 C 0.521 3.479 26 O -0.532 6.532 27 C -0.153 4.153 28 H 0.080 0.920 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.036 0.964 35 H 0.091 0.909 36 H 0.048 0.952 37 H 0.392 0.608 38 H 0.271 0.729 39 H 0.027 0.973 40 H 0.117 0.883 41 H 0.081 0.919 42 H 0.093 0.907 43 H 0.098 0.902 44 H 0.082 0.918 45 H 0.413 0.587 46 H 0.120 0.880 47 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.092 -19.580 13.656 25.206 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.101 4.101 3 C 0.314 3.686 4 O -0.413 6.413 5 N -0.337 5.337 6 C -0.023 4.023 7 C -0.094 4.094 8 N -0.237 5.237 9 C -0.085 4.085 10 C 0.228 3.772 11 O -0.463 6.463 12 N -0.199 5.199 13 C -0.428 4.428 14 H 0.122 0.878 15 C -0.179 4.179 16 N -0.542 5.542 17 Si 0.756 3.244 18 H -0.192 1.192 19 H -0.208 1.208 20 H -0.207 1.207 21 C -0.089 4.089 22 C -0.002 4.002 23 C -0.005 4.005 24 N -0.382 5.382 25 C 0.306 3.694 26 O -0.408 6.408 27 C -0.193 4.193 28 H 0.099 0.901 29 H 0.093 0.907 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.054 0.946 35 H 0.109 0.891 36 H 0.066 0.934 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.045 0.955 40 H 0.135 0.865 41 H 0.099 0.901 42 H 0.111 0.889 43 H 0.116 0.884 44 H 0.100 0.900 45 H 0.251 0.749 46 H 0.138 0.862 47 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -7.933 -18.842 14.264 24.928 hybrid contribution 1.231 0.096 -0.682 1.411 sum -6.701 -18.746 13.582 24.100 Atomic orbital electron populations 1.22054 0.90143 1.03711 1.04358 1.21726 0.98506 0.93062 0.96821 1.20047 0.80547 0.86286 0.81715 1.90698 1.35846 1.77670 1.37048 1.48139 1.52312 1.10975 1.22302 1.22268 0.95175 1.00103 0.84760 1.22546 0.99786 0.89289 0.97757 1.61530 1.46577 1.12151 1.03486 1.21860 0.99117 0.96053 0.91501 1.19691 0.84419 0.88106 0.84942 1.90480 1.52571 1.68595 1.34610 1.41880 1.56495 1.07318 1.14247 1.19740 1.40558 0.81193 1.01295 0.87816 1.25269 0.96965 1.00681 0.95034 1.69617 1.43690 1.36459 1.04474 0.85805 0.77826 0.82274 0.78478 1.19198 1.20765 1.20737 1.22660 0.92306 1.04281 0.89664 1.21800 1.00721 0.79604 0.98033 1.22071 0.86757 0.95464 0.96255 1.46135 1.24884 1.59551 1.07582 1.20742 0.87095 0.78778 0.82745 1.90779 1.40076 1.47142 1.62807 1.22685 0.97685 1.00648 0.98290 0.90135 0.90657 0.91007 0.89846 0.88657 0.89206 0.94593 0.89124 0.93384 0.77484 0.91889 0.95471 0.86536 0.90067 0.88913 0.88400 0.89964 0.74857 0.86215 0.87202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 8.12 37.15 0.30 -0.32 16 2 C -0.10 -0.70 0.60 -154.03 -0.09 -0.79 16 3 C 0.53 5.96 6.52 -10.98 -0.07 5.89 16 4 O -0.54 -7.94 14.97 5.56 0.08 -7.85 16 5 N -0.60 -6.82 3.01 -172.46 -0.52 -7.33 16 6 C 0.10 0.87 4.17 -3.61 -0.02 0.86 16 7 C 0.04 0.38 5.58 -3.70 -0.02 0.36 16 8 N -0.51 -7.80 4.37 -235.76 -1.03 -8.83 16 9 C 0.05 0.77 5.45 -4.98 -0.03 0.75 16 10 C 0.44 10.01 7.44 -10.99 -0.08 9.93 16 11 O -0.58 -14.82 13.91 5.55 0.08 -14.74 16 12 N -0.56 -13.89 5.29 -10.97 -0.06 -13.94 16 13 C -0.30 -8.14 9.68 -14.93 -0.14 -8.29 16 14 H 0.10 2.97 7.16 -52.49 -0.38 2.60 16 15 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 16 N -0.90 -24.26 13.05 55.50 0.72 -23.53 16 17 Si 0.93 20.81 29.55 -169.99 -5.02 15.79 16 18 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 19 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 20 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 21 C 0.04 0.62 5.26 -3.70 -0.02 0.60 16 22 C 0.12 1.65 6.61 -3.60 -0.02 1.62 16 23 C 0.12 0.79 6.69 -3.12 -0.02 0.77 16 24 N -0.73 -6.13 6.24 -59.20 -0.37 -6.50 16 25 C 0.52 5.72 8.43 -10.86 -0.09 5.63 16 26 O -0.53 -8.17 18.03 5.56 0.10 -8.07 16 27 C -0.15 -1.15 4.67 -26.74 -0.12 -1.28 16 28 H 0.08 0.31 5.14 -51.93 -0.27 0.04 16 29 H 0.07 0.17 7.99 -51.93 -0.41 -0.24 16 30 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 31 H 0.08 0.70 8.09 -51.93 -0.42 0.28 16 32 H 0.10 0.56 3.28 -51.93 -0.17 0.39 16 33 H 0.09 0.82 7.99 -51.93 -0.41 0.40 16 34 H 0.04 0.40 8.01 -51.93 -0.42 -0.01 16 35 H 0.09 1.35 7.97 -51.93 -0.41 0.93 16 36 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 37 H 0.39 9.29 7.90 -40.82 -0.32 8.97 16 38 H 0.27 6.90 8.31 -40.82 -0.34 6.56 16 39 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.12 2.23 5.77 -51.93 -0.30 1.93 16 41 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 42 H 0.09 1.33 7.04 -51.93 -0.37 0.96 16 43 H 0.10 0.76 7.00 -51.92 -0.36 0.40 16 44 H 0.08 0.31 7.78 -51.93 -0.40 -0.09 16 45 H 0.41 2.97 8.96 -40.82 -0.37 2.61 16 46 H 0.12 0.55 7.90 -51.93 -0.41 0.14 16 47 H 0.11 0.93 6.04 -51.93 -0.31 0.61 16 LS Contribution 369.33 15.07 5.57 5.57 Total: -1.00 -35.47 369.33 -7.54 -43.01 By element: Atomic # 1 Polarization: 16.78 SS G_CDS: -6.56 Total: 10.21 kcal Atomic # 6 Polarization: 16.74 SS G_CDS: -0.53 Total: 16.21 kcal Atomic # 7 Polarization: -58.88 SS G_CDS: -1.25 Total: -60.14 kcal Atomic # 8 Polarization: -30.92 SS G_CDS: 0.26 Total: -30.66 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -35.47 -7.54 -43.01 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113137127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.996 kcal (2) G-P(sol) polarization free energy of solvation -35.475 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.010 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds