Wall clock time and date at job start Tue Mar 31 2020 20:28:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50701 * 110.86135 * 2 1 4 4 O 1.21277 * 120.00647 * 122.52991 * 3 2 1 5 5 N 1.34780 * 119.99357 * 302.53973 * 3 2 1 6 6 C 1.47073 * 120.88663 * 355.29278 * 5 3 2 7 7 C 1.53239 * 108.52188 * 231.16739 * 6 5 3 8 8 N 1.46900 * 109.33993 * 306.16598 * 7 6 5 9 9 C 1.46894 * 111.00544 * 187.25116 * 8 7 6 10 10 C 1.50702 * 109.47621 * 170.00017 * 9 8 7 11 11 O 1.21288 * 119.99614 * 359.97438 * 10 9 8 12 12 N 1.34773 * 120.00152 * 180.02562 * 10 9 8 13 13 C 1.37097 * 119.99702 * 179.72470 * 12 10 9 14 14 H 1.07995 * 120.00620 * 0.27380 * 13 12 10 15 15 C 1.38948 * 119.99843 * 180.27228 * 13 12 10 16 16 N 1.31410 * 120.00131 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 120.00202 * 179.97438 * 15 13 12 18 18 H 1.48497 * 109.46706 * 359.97438 * 17 15 13 19 19 H 1.48500 * 109.47103 * 120.00131 * 17 15 13 20 20 H 1.48501 * 109.47193 * 240.00090 * 17 15 13 21 21 C 1.46911 * 111.26745 * 63.10388 * 8 7 6 22 22 C 1.47086 * 120.87833 * 175.27033 * 5 3 2 23 23 C 1.54481 * 110.96781 * 123.78843 * 2 1 3 24 24 N 1.46765 * 105.47423 * 143.57168 * 23 2 1 25 25 C 1.34418 * 111.30170 * 342.98419 * 24 23 2 26 26 O 1.21273 * 124.94597 * 180.37035 * 25 24 23 27 27 C 1.51289 * 110.11210 * 0.40728 * 25 24 23 28 28 H 1.09003 * 109.47397 * 66.17746 * 1 2 3 29 29 H 1.08998 * 109.47436 * 186.18063 * 1 2 3 30 30 H 1.09008 * 109.47147 * 306.18086 * 1 2 3 31 31 H 1.08996 * 109.63249 * 111.45273 * 6 5 3 32 32 H 1.09004 * 109.78395 * 350.96294 * 6 5 3 33 33 H 1.08998 * 109.49525 * 186.20531 * 7 6 5 34 34 H 1.09004 * 109.49791 * 66.12307 * 7 6 5 35 35 H 1.09006 * 109.46556 * 50.00179 * 9 8 7 36 36 H 1.09000 * 109.47343 * 290.00772 * 9 8 7 37 37 H 0.97000 * 119.99881 * 359.97438 * 12 10 9 38 38 H 0.97003 * 120.00324 * 179.97438 * 16 15 13 39 39 H 1.08997 * 109.49093 * 56.85745 * 21 8 7 40 40 H 1.09002 * 109.48894 * 176.93505 * 21 8 7 41 41 H 1.08996 * 109.62799 * 248.54547 * 22 5 3 42 42 H 1.09004 * 109.62669 * 8.92958 * 22 5 3 43 43 H 1.09007 * 110.24567 * 262.56805 * 23 2 1 44 44 H 1.09000 * 110.25001 * 24.48390 * 23 2 1 45 45 H 0.96996 * 124.35042 * 163.00303 * 24 23 2 46 46 H 1.09001 * 110.48394 * 257.57294 * 27 25 24 47 47 H 1.09006 * 110.48316 * 134.93523 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0666 1.4082 0.0000 4 8 2.8103 1.7739 0.8855 5 7 1.7198 2.2614 -0.9841 6 6 0.9031 1.8107 -2.1211 7 6 1.6029 2.2282 -3.4189 8 7 1.8743 3.6715 -3.3826 9 6 2.3879 4.1433 -4.6755 10 6 2.4220 5.6499 -4.6829 11 8 2.0542 6.2696 -3.7074 12 7 2.8603 6.3086 -5.7740 13 6 2.8860 7.6793 -5.7828 14 1 2.5593 8.2312 -4.9139 15 6 3.3325 8.3586 -6.9097 16 7 3.7306 7.6871 -7.9668 17 14 3.3669 10.2263 -6.9220 18 1 2.8708 10.7390 -5.6197 19 1 4.7591 10.6943 -7.1410 20 1 2.4976 10.7302 -8.0154 21 6 2.7985 4.0127 -2.2928 22 6 2.1477 3.6682 -0.9490 23 6 2.0827 -0.8022 1.1989 24 7 3.2856 -1.4771 0.6972 25 6 3.3096 -1.4973 -0.6466 26 8 4.1864 -1.9981 -1.3183 27 6 2.0841 -0.8033 -1.1993 28 1 -0.3634 0.4151 -0.9401 29 1 -0.3634 -1.0217 0.1106 30 1 -0.3634 0.6067 0.8295 31 1 -0.0821 2.2741 -2.0709 32 1 0.7994 0.7259 -2.0938 33 1 0.9595 2.0003 -4.2687 34 1 2.5422 1.6839 -3.5171 35 1 1.7369 3.7906 -5.4755 36 1 3.3951 3.7562 -4.8295 37 1 3.1541 5.8130 -6.5543 38 1 4.0420 8.1613 -8.7537 39 1 3.7211 3.4434 -2.4068 40 1 3.0221 5.0790 -2.3261 41 1 1.2821 4.3102 -0.7861 42 1 2.8672 3.8121 -0.1429 43 1 2.3412 -0.1289 2.0163 44 1 1.3487 -1.5356 1.5327 45 1 3.9745 -1.8598 1.2627 46 1 1.3517 -1.5357 -1.5390 47 1 2.3600 -0.1326 -2.0131 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001113137127.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:20 Heat of formation + Delta-G solvation = -108.499616 kcal Electronic energy + Delta-G solvation = -30378.769073 eV Core-core repulsion = 26174.873053 eV Total energy + Delta-G solvation = -4203.896020 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.41083 -40.77183 -40.10246 -38.72786 -37.52574 -36.16027 -35.56264 -34.02887 -33.25564 -31.95847 -30.21086 -29.53677 -27.51955 -27.02713 -25.73954 -24.94057 -23.70521 -21.86933 -21.55382 -21.02587 -19.94791 -19.76556 -18.64912 -17.93309 -17.77555 -17.34777 -16.70827 -16.61294 -16.52089 -16.22086 -16.08438 -15.91982 -15.51910 -15.36288 -15.31711 -15.00406 -14.93961 -14.32164 -14.14006 -13.95811 -13.76352 -13.50718 -13.29708 -13.25372 -13.05498 -12.94415 -12.76363 -12.65910 -12.45208 -12.37845 -12.29850 -12.16181 -12.08786 -11.76269 -11.45859 -11.03477 -10.80935 -10.33082 -10.16898 -10.00050 -9.79919 -9.24938 -8.46222 -5.94371 1.36337 1.41774 1.43440 1.48482 1.55564 1.81531 2.06428 2.28248 2.39065 2.70638 3.10669 3.20971 3.26487 3.28957 3.36307 3.70091 3.88056 3.95979 4.08339 4.08411 4.18561 4.27441 4.41702 4.47289 4.48536 4.52212 4.55652 4.59825 4.67184 4.69073 4.74796 4.82502 4.87349 4.94419 4.96823 5.06684 5.33313 5.38198 5.41976 5.75725 5.78535 5.94637 6.01844 6.13593 6.35683 6.61251 7.00989 7.14075 7.15031 7.57830 8.13224 8.71448 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024879 B = 0.002311 C = 0.002251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1125.198132 B =12113.973526 C =12433.709643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.087 4.087 3 C 0.519 3.481 4 O -0.579 6.579 5 N -0.605 5.605 6 C 0.100 3.900 7 C 0.031 3.969 8 N -0.524 5.524 9 C 0.057 3.943 10 C 0.442 3.558 11 O -0.612 6.612 12 N -0.576 5.576 13 C -0.328 4.328 14 H 0.079 0.921 15 C -0.014 4.014 16 N -0.922 5.922 17 Si 0.991 3.009 18 H -0.273 1.273 19 H -0.273 1.273 20 H -0.270 1.270 21 C 0.047 3.953 22 C 0.129 3.871 23 C 0.118 3.882 24 N -0.722 5.722 25 C 0.507 3.493 26 O -0.588 6.588 27 C -0.146 4.146 28 H 0.089 0.911 29 H 0.108 0.892 30 H 0.068 0.932 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.119 0.881 34 H 0.036 0.964 35 H 0.121 0.879 36 H 0.059 0.941 37 H 0.395 0.605 38 H 0.277 0.723 39 H 0.020 0.980 40 H 0.076 0.924 41 H 0.076 0.924 42 H 0.078 0.922 43 H 0.084 0.916 44 H 0.124 0.876 45 H 0.415 0.585 46 H 0.162 0.838 47 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.429 -21.733 13.446 27.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.091 4.091 3 C 0.308 3.692 4 O -0.459 6.459 5 N -0.337 5.337 6 C -0.021 4.021 7 C -0.097 4.097 8 N -0.249 5.249 9 C -0.074 4.074 10 C 0.229 3.771 11 O -0.498 6.498 12 N -0.213 5.213 13 C -0.458 4.458 14 H 0.097 0.903 15 C -0.214 4.214 16 N -0.563 5.563 17 Si 0.815 3.185 18 H -0.198 1.198 19 H -0.199 1.199 20 H -0.196 1.196 21 C -0.081 4.081 22 C 0.006 3.994 23 C -0.006 4.006 24 N -0.376 5.376 25 C 0.295 3.705 26 O -0.469 6.469 27 C -0.185 4.185 28 H 0.108 0.892 29 H 0.126 0.874 30 H 0.087 0.913 31 H 0.114 0.886 32 H 0.150 0.850 33 H 0.137 0.863 34 H 0.054 0.946 35 H 0.138 0.862 36 H 0.077 0.923 37 H 0.229 0.771 38 H 0.086 0.914 39 H 0.039 0.961 40 H 0.094 0.906 41 H 0.095 0.905 42 H 0.097 0.903 43 H 0.102 0.898 44 H 0.142 0.858 45 H 0.254 0.746 46 H 0.179 0.821 47 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.309 -21.022 14.067 27.315 hybrid contribution 1.968 0.741 -0.509 2.163 sum -8.342 -20.281 13.559 25.783 Atomic orbital electron populations 1.22125 0.87016 1.05946 1.04825 1.21763 1.00601 0.89707 0.96988 1.20914 0.79672 0.87832 0.80745 1.90682 1.37735 1.78816 1.38688 1.48201 1.52418 1.09773 1.23290 1.22538 0.94719 1.02344 0.82496 1.22775 1.00640 0.86056 1.00204 1.61519 1.45813 1.15380 1.02187 1.21751 1.00737 0.91402 0.93472 1.20754 0.82153 0.90660 0.83512 1.90463 1.53415 1.70264 1.35655 1.41953 1.57547 1.06690 1.15120 1.19671 1.42278 0.82700 1.01165 0.90276 1.26013 0.96159 1.04796 0.94390 1.69675 1.43818 1.37979 1.04822 0.84899 0.78197 0.77129 0.78296 1.19770 1.19867 1.19552 1.22415 0.92708 1.01663 0.91358 1.21463 1.00013 0.81660 0.96232 1.22310 0.86739 0.96064 0.95526 1.46279 1.25517 1.58593 1.07189 1.21386 0.87520 0.78361 0.83281 1.90746 1.42277 1.49785 1.64052 1.22764 0.96968 1.01024 0.97785 0.89214 0.87355 0.91255 0.88642 0.84991 0.86325 0.94605 0.86153 0.92262 0.77081 0.91379 0.96140 0.90566 0.90533 0.90323 0.89764 0.85800 0.74593 0.82062 0.87868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.49 8.12 71.98 0.58 0.10 16 2 C -0.09 -0.96 0.60 -51.87 -0.03 -1.00 16 3 C 0.52 11.06 6.52 87.66 0.57 11.63 16 4 O -0.58 -17.35 14.97 -3.02 -0.05 -17.39 16 5 N -0.60 -12.82 3.01 -817.94 -2.46 -15.28 16 6 C 0.10 1.42 4.17 86.35 0.36 1.78 16 7 C 0.03 0.59 5.58 86.38 0.48 1.07 16 8 N -0.52 -15.41 4.37 -899.80 -3.93 -19.35 16 9 C 0.06 1.88 5.45 85.56 0.47 2.35 16 10 C 0.44 20.38 7.44 87.66 0.65 21.03 16 11 O -0.61 -32.59 13.91 -3.05 -0.04 -32.63 16 12 N -0.58 -29.08 5.29 -307.00 -1.62 -30.70 16 13 C -0.33 -18.48 9.68 84.04 0.81 -17.66 16 14 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 15 C -0.01 -0.75 5.50 84.93 0.47 -0.28 16 16 N -0.92 -49.66 13.05 21.66 0.28 -49.38 16 17 Si 0.99 42.93 29.55 68.60 2.03 44.96 16 18 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 19 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 20 H -0.27 -11.18 7.11 99.48 0.71 -10.48 16 21 C 0.05 1.55 5.26 86.38 0.45 2.00 16 22 C 0.13 3.64 6.61 86.35 0.57 4.22 16 23 C 0.12 1.22 6.69 86.83 0.58 1.80 16 24 N -0.72 -11.10 6.24 -459.79 -2.87 -13.97 16 25 C 0.51 10.41 8.43 87.90 0.74 11.15 16 26 O -0.59 -18.04 18.03 -3.01 -0.05 -18.09 16 27 C -0.15 -1.68 4.67 30.59 0.14 -1.54 16 28 H 0.09 0.18 5.14 -2.39 -0.01 0.16 16 29 H 0.11 -0.24 7.99 -2.39 -0.02 -0.26 16 30 H 0.07 0.35 8.14 -2.38 -0.02 0.33 16 31 H 0.10 1.21 8.09 -2.39 -0.02 1.19 16 32 H 0.13 0.90 3.28 -2.39 -0.01 0.90 16 33 H 0.12 1.61 7.99 -2.39 -0.02 1.59 16 34 H 0.04 0.71 8.01 -2.38 -0.02 0.69 16 35 H 0.12 3.26 7.97 -2.38 -0.02 3.24 16 36 H 0.06 1.84 8.12 -2.39 -0.02 1.82 16 37 H 0.40 19.03 7.90 -92.71 -0.73 18.30 16 38 H 0.28 13.95 8.31 -92.71 -0.77 13.18 16 39 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.08 3.12 5.77 -2.39 -0.01 3.10 16 41 H 0.08 2.20 8.14 -2.39 -0.02 2.19 16 42 H 0.08 2.41 7.04 -2.38 -0.02 2.39 16 43 H 0.08 1.18 7.00 -2.38 -0.02 1.17 16 44 H 0.12 0.34 7.78 -2.39 -0.02 0.32 16 45 H 0.42 5.70 8.96 -92.71 -0.83 4.87 16 46 H 0.16 0.55 7.90 -2.39 -0.02 0.53 16 47 H 0.10 1.40 6.04 -2.38 -0.01 1.39 16 Total: -1.00 -82.73 369.33 -2.39 -85.12 By element: Atomic # 1 Polarization: 30.58 SS G_CDS: -0.53 Total: 30.06 kcal Atomic # 6 Polarization: 29.79 SS G_CDS: 6.86 Total: 36.65 kcal Atomic # 7 Polarization: -118.06 SS G_CDS: -10.60 Total: -128.66 kcal Atomic # 8 Polarization: -67.97 SS G_CDS: -0.14 Total: -68.12 kcal Atomic # 14 Polarization: 42.93 SS G_CDS: 2.03 Total: 44.96 kcal Total: -82.73 -2.39 -85.12 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113137127.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.380 kcal (2) G-P(sol) polarization free energy of solvation -82.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds