Wall clock time and date at job start Tue Mar 31 2020 20:28:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50701 * 110.85752 * 2 1 4 4 O 1.21280 * 120.00076 * 122.82935 * 3 2 1 5 5 N 1.34777 * 119.99646 * 302.55094 * 3 2 1 6 6 C 1.47084 * 120.87706 * 175.12144 * 5 3 2 7 7 C 1.53703 * 108.27356 * 128.75851 * 6 5 3 8 8 N 1.46899 * 109.25699 * 54.08434 * 7 6 5 9 9 C 1.46896 * 110.99954 * 172.60880 * 8 7 6 10 10 C 1.50701 * 109.47315 * 60.83510 * 9 8 7 11 11 O 1.21284 * 119.99852 * 356.19303 * 10 9 8 12 12 N 1.34771 * 119.99903 * 176.18801 * 10 9 8 13 13 C 1.37096 * 120.00074 * 180.02562 * 12 10 9 14 14 H 1.07999 * 119.99651 * 359.97438 * 13 12 10 15 15 C 1.38948 * 120.00304 * 180.02562 * 13 12 10 16 16 N 1.31411 * 119.99882 * 359.97438 * 15 13 12 17 17 Si 1.86800 * 120.00152 * 179.97438 * 15 13 12 18 18 H 1.48495 * 109.47149 * 359.97438 * 17 15 13 19 19 H 1.48504 * 109.47343 * 119.99824 * 17 15 13 20 20 H 1.48504 * 109.47031 * 239.99691 * 17 15 13 21 21 C 1.46899 * 111.26539 * 296.75627 * 8 7 6 22 22 C 1.47077 * 120.88416 * 355.40883 * 5 3 2 23 23 C 1.54484 * 111.00013 * 236.18745 * 2 1 3 24 24 N 1.46767 * 105.46885 * 216.45366 * 23 2 1 25 25 C 1.34416 * 111.30124 * 17.01810 * 24 23 2 26 26 O 1.21281 * 124.94011 * 179.56127 * 25 24 23 27 27 C 1.51275 * 110.11863 * 359.58814 * 25 24 23 28 28 H 1.09001 * 109.46819 * 64.61972 * 1 2 3 29 29 H 1.08998 * 109.47462 * 184.61816 * 1 2 3 30 30 H 1.08998 * 109.46983 * 304.62695 * 1 2 3 31 31 H 1.08998 * 109.63121 * 248.52688 * 6 5 3 32 32 H 1.09001 * 109.63059 * 9.10886 * 6 5 3 33 33 H 1.08996 * 109.64338 * 294.07786 * 7 6 5 34 34 H 1.08995 * 109.41729 * 173.94703 * 7 6 5 35 35 H 1.08998 * 109.46944 * 180.84099 * 9 8 7 36 36 H 1.09003 * 109.46839 * 300.83384 * 9 8 7 37 37 H 0.97002 * 120.00491 * 0.02562 * 12 10 9 38 38 H 0.97001 * 120.00111 * 180.02562 * 16 15 13 39 39 H 1.08997 * 109.49543 * 303.13896 * 21 8 7 40 40 H 1.09006 * 109.48730 * 183.06616 * 21 8 7 41 41 H 1.09000 * 109.62755 * 350.88885 * 22 5 3 42 42 H 1.09001 * 109.63215 * 111.27840 * 22 5 3 43 43 H 1.09004 * 110.24359 * 335.45147 * 23 2 1 44 44 H 1.08993 * 110.24704 * 97.45341 * 23 2 1 45 45 H 0.96997 * 124.34613 * 197.03325 * 24 23 2 46 46 H 1.08999 * 110.49102 * 225.07038 * 27 25 24 47 47 H 1.09002 * 110.48244 * 102.42915 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4083 0.0000 4 8 2.8146 1.7722 0.8826 5 7 1.7196 2.2615 -0.9839 6 6 2.1448 3.6691 -0.9471 7 6 2.7995 4.0102 -2.2952 8 7 1.8733 3.6699 -3.3835 9 6 2.3859 4.1401 -4.6773 10 6 3.7078 3.4761 -4.9653 11 8 4.2100 2.7421 -4.1407 12 7 4.3317 3.6979 -6.1391 13 6 5.5340 3.0935 -6.4012 14 1 5.9813 2.4400 -5.6669 15 6 6.1776 3.3225 -7.6112 16 7 5.6335 4.1181 -8.5045 17 14 7.8161 2.4995 -7.9681 18 1 8.2108 1.6593 -6.8091 19 1 7.6889 1.6472 -9.1775 20 1 8.8514 3.5383 -8.2013 21 6 1.5995 2.2271 -3.4185 22 6 0.9006 1.8114 -2.1196 23 6 2.0837 -0.8026 -1.1983 24 7 3.2861 -1.4773 -0.6955 25 6 3.3091 -1.4971 0.6483 26 8 4.1849 -1.9988 1.3208 27 6 2.0834 -0.8030 1.2000 28 1 -0.3633 0.4405 -0.9285 29 1 -0.3634 -1.0243 0.0827 30 1 -0.3633 0.5839 0.8456 31 1 1.2777 4.3094 -0.7853 32 1 2.8652 3.8131 -0.1419 33 1 3.7209 3.4394 -2.4099 34 1 3.0248 5.0761 -2.3293 35 1 1.6739 3.8883 -5.4634 36 1 2.5220 5.2210 -4.6431 37 1 3.9302 4.2851 -6.7985 38 1 6.0826 4.2777 -9.3494 39 1 2.5376 1.6811 -3.5177 40 1 0.9544 1.9999 -4.2674 41 1 0.7982 0.7267 -2.0899 42 1 -0.0849 2.2739 -2.0664 43 1 1.3504 -1.5371 -1.5314 44 1 2.3427 -0.1296 -2.0156 45 1 3.9757 -1.8597 -1.2604 46 1 2.3586 -0.1320 2.0137 47 1 1.3508 -1.5353 1.5394 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001113137128.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:25 Heat of formation + Delta-G solvation = -78.248144 kcal Electronic energy + Delta-G solvation = -31062.934194 eV Core-core repulsion = 26860.349977 eV Total energy + Delta-G solvation = -4202.584218 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.47600 -39.70861 -38.80817 -37.10773 -36.61680 -34.66738 -33.78706 -33.08544 -31.42937 -31.05111 -29.01366 -28.46902 -26.53462 -25.88703 -24.20687 -23.73289 -22.67883 -20.82134 -20.58739 -19.56346 -18.89220 -17.94789 -17.46953 -17.13011 -16.33998 -16.15915 -15.71742 -15.30152 -15.17465 -14.96238 -14.83388 -14.60276 -14.25962 -14.16827 -13.96153 -13.73416 -13.70314 -13.47567 -13.19332 -12.98803 -12.63789 -12.34385 -12.16992 -11.94703 -11.80611 -11.62342 -11.55432 -11.40841 -11.26548 -10.99441 -10.90647 -10.76593 -10.44363 -10.35199 -9.95679 -9.85410 -9.59462 -9.38622 -9.25463 -8.72252 -8.10441 -7.56080 -6.55105 -3.96723 2.43481 2.54169 2.81947 3.06228 3.19087 3.20315 3.25716 3.71036 3.89815 4.02564 4.07169 4.13311 4.17620 4.45805 4.74711 4.83790 4.93840 4.99493 5.10177 5.11189 5.15067 5.19100 5.25664 5.29025 5.37753 5.42931 5.52178 5.55851 5.65951 5.69035 5.73343 5.85081 5.90327 5.95735 6.09175 6.31816 6.43230 6.61601 6.62405 6.86525 7.08152 7.23010 7.35508 7.42366 7.91036 8.04831 8.13303 8.44895 9.03408 9.38450 9.88375 10.61250 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013331 B = 0.003233 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.820691 B = 8659.513941 C = 9945.933637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.097 4.097 3 C 0.529 3.471 4 O -0.534 6.534 5 N -0.601 5.601 6 C 0.120 3.880 7 C 0.020 3.980 8 N -0.511 5.511 9 C 0.042 3.958 10 C 0.403 3.597 11 O -0.595 6.595 12 N -0.554 5.554 13 C -0.303 4.303 14 H 0.103 0.897 15 C 0.026 3.974 16 N -0.896 5.896 17 Si 0.928 3.072 18 H -0.268 1.268 19 H -0.280 1.280 20 H -0.280 1.280 21 C 0.023 3.977 22 C 0.104 3.896 23 C 0.106 3.894 24 N -0.730 5.730 25 C 0.525 3.475 26 O -0.534 6.534 27 C -0.138 4.138 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.091 0.909 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.393 0.607 38 H 0.273 0.727 39 H 0.075 0.925 40 H 0.079 0.921 41 H 0.091 0.909 42 H 0.076 0.924 43 H 0.087 0.913 44 H 0.092 0.908 45 H 0.414 0.586 46 H 0.119 0.881 47 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.254 -4.886 10.084 19.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.101 4.101 3 C 0.316 3.684 4 O -0.411 6.411 5 N -0.334 5.334 6 C -0.002 4.002 7 C -0.108 4.108 8 N -0.234 5.234 9 C -0.090 4.090 10 C 0.188 3.812 11 O -0.482 6.482 12 N -0.188 5.188 13 C -0.433 4.433 14 H 0.121 0.879 15 C -0.177 4.177 16 N -0.537 5.537 17 Si 0.755 3.245 18 H -0.192 1.192 19 H -0.206 1.206 20 H -0.206 1.206 21 C -0.106 4.106 22 C -0.019 4.019 23 C -0.019 4.019 24 N -0.386 5.386 25 C 0.312 3.688 26 O -0.410 6.410 27 C -0.178 4.178 28 H 0.097 0.903 29 H 0.093 0.907 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.108 0.892 36 H 0.109 0.891 37 H 0.226 0.774 38 H 0.083 0.917 39 H 0.093 0.907 40 H 0.097 0.903 41 H 0.109 0.891 42 H 0.094 0.906 43 H 0.105 0.895 44 H 0.110 0.890 45 H 0.253 0.747 46 H 0.137 0.863 47 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -15.518 -5.077 11.431 19.931 hybrid contribution 1.589 -0.366 -1.497 2.214 sum -13.928 -5.443 9.934 17.953 Atomic orbital electron populations 1.22054 0.90326 1.03661 1.04098 1.21708 0.98312 0.93103 0.96995 1.20028 0.80485 0.86272 0.81621 1.90706 1.35369 1.77624 1.37390 1.47993 1.52450 1.10693 1.22265 1.21848 0.99792 0.80137 0.98420 1.22861 0.96964 1.01722 0.89298 1.62452 1.43588 1.14384 1.03023 1.22056 0.94502 1.00484 0.91981 1.21065 0.88703 0.87352 0.84038 1.90413 1.68530 1.42411 1.46863 1.42060 1.19891 1.41805 1.15081 1.19752 0.96550 1.25378 1.01648 0.87938 1.25288 0.99920 0.96958 0.95507 1.69611 1.39737 1.36275 1.08072 0.85819 0.81167 0.78958 0.78542 1.19232 1.20611 1.20597 1.22649 1.01485 0.90128 0.96298 1.22235 0.94486 0.99892 0.85319 1.22383 0.87631 0.96005 0.95897 1.46191 1.24706 1.59907 1.07804 1.20785 0.87180 0.78361 0.82500 1.90749 1.40226 1.47296 1.62720 1.22381 0.96692 1.00056 0.98679 0.90323 0.90723 0.91053 0.91222 0.89061 0.89309 0.90590 0.89239 0.89104 0.77357 0.91720 0.90719 0.90251 0.89114 0.90594 0.89494 0.88989 0.74683 0.86332 0.87044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.82 8.11 37.16 0.30 -0.52 16 2 C -0.10 -0.91 0.60 -154.02 -0.09 -1.01 16 3 C 0.53 7.01 6.52 -10.98 -0.07 6.94 16 4 O -0.53 -9.20 14.97 5.56 0.08 -9.12 16 5 N -0.60 -7.37 3.00 -172.17 -0.52 -7.89 16 6 C 0.12 1.58 6.64 -3.36 -0.02 1.56 16 7 C 0.02 0.30 5.16 -3.46 -0.02 0.28 16 8 N -0.51 -7.26 4.83 -235.46 -1.14 -8.39 16 9 C 0.04 0.65 5.83 -4.98 -0.03 0.62 16 10 C 0.40 8.52 7.19 -10.99 -0.08 8.44 16 11 O -0.59 -14.26 11.24 5.55 0.06 -14.20 16 12 N -0.55 -13.06 5.29 -10.97 -0.06 -13.12 16 13 C -0.30 -8.06 9.68 -14.93 -0.14 -8.21 16 14 H 0.10 2.90 7.16 -52.49 -0.38 2.52 16 15 C 0.03 0.66 5.50 -17.47 -0.10 0.57 16 16 N -0.90 -23.45 13.05 55.50 0.72 -22.72 16 17 Si 0.93 20.45 29.55 -169.99 -5.02 15.43 16 18 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 19 H -0.28 -6.06 7.11 56.52 0.40 -5.66 16 20 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 21 C 0.02 0.30 5.14 -3.70 -0.02 0.28 16 22 C 0.10 1.00 4.15 -3.60 -0.01 0.99 16 23 C 0.11 0.95 5.64 -3.12 -0.02 0.93 16 24 N -0.73 -8.46 6.24 -59.20 -0.37 -8.83 16 25 C 0.53 7.36 8.43 -10.87 -0.09 7.26 16 26 O -0.53 -9.70 18.03 5.56 0.10 -9.60 16 27 C -0.14 -1.46 5.76 -26.75 -0.15 -1.61 16 28 H 0.08 0.37 5.09 -51.93 -0.26 0.11 16 29 H 0.07 0.28 8.04 -51.93 -0.42 -0.13 16 30 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.09 1.32 7.04 -51.93 -0.37 0.95 16 33 H 0.09 1.75 5.49 -51.93 -0.29 1.47 16 34 H 0.08 1.09 8.10 -51.93 -0.42 0.67 16 35 H 0.09 1.24 8.09 -51.93 -0.42 0.82 16 36 H 0.09 1.31 8.13 -51.93 -0.42 0.89 16 37 H 0.39 8.92 7.90 -40.82 -0.32 8.60 16 38 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 39 H 0.07 1.26 5.82 -51.93 -0.30 0.96 16 40 H 0.08 0.90 8.07 -51.93 -0.42 0.49 16 41 H 0.09 0.67 3.27 -51.93 -0.17 0.50 16 42 H 0.08 0.62 8.07 -51.93 -0.42 0.20 16 43 H 0.09 0.50 7.89 -51.93 -0.41 0.09 16 44 H 0.09 0.94 5.95 -51.93 -0.31 0.63 16 45 H 0.41 4.53 8.96 -40.82 -0.37 4.16 16 46 H 0.12 1.47 6.99 -51.93 -0.36 1.10 16 47 H 0.11 0.83 7.82 -51.93 -0.41 0.42 16 LS Contribution 364.39 15.07 5.49 5.49 Total: -1.00 -34.52 364.39 -7.63 -42.15 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -6.44 Total: 14.28 kcal Atomic # 6 Polarization: 17.08 SS G_CDS: -0.55 Total: 16.53 kcal Atomic # 7 Polarization: -59.60 SS G_CDS: -1.36 Total: -60.96 kcal Atomic # 8 Polarization: -33.17 SS G_CDS: 0.25 Total: -32.93 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.02 Total: 15.43 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.52 -7.63 -42.15 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001113137128.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.097 kcal (2) G-P(sol) polarization free energy of solvation -34.521 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds