Wall clock time and date at job start Tue Mar 31 2020 20:37:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.34328 * 126.44658 * 2 1 4 4 N 1.34477 * 107.67295 * 179.76729 * 3 2 1 5 5 C 1.30260 * 108.69507 * 0.41683 * 4 3 2 6 6 C 1.50701 * 125.61558 * 179.84061 * 5 4 3 7 7 C 1.52997 * 109.47212 * 89.69574 * 6 5 4 8 8 C 1.52992 * 109.47482 * 179.97438 * 7 6 5 9 9 C 1.50698 * 109.47592 * 179.97438 * 8 7 6 10 10 O 1.21286 * 119.99758 * 0.02562 * 9 8 7 11 11 N 1.34779 * 120.00201 * 179.97438 * 9 8 7 12 12 C 1.46499 * 119.99872 * 179.97438 * 11 9 8 13 13 C 1.52997 * 109.47012 * 180.02562 * 12 11 9 14 14 N 1.46906 * 109.47344 * 180.02562 * 13 12 11 15 15 C 1.46893 * 111.00241 * 179.97438 * 14 13 12 16 16 C 1.50703 * 109.47055 * 179.97438 * 15 14 13 17 17 O 1.21289 * 120.00158 * 0.02562 * 16 15 14 18 18 N 1.34784 * 119.99754 * 180.02562 * 16 15 14 19 19 C 1.37092 * 119.99620 * 180.02562 * 18 16 15 20 20 H 1.08000 * 120.00420 * 359.97438 * 19 18 16 21 21 C 1.38947 * 119.99813 * 180.02562 * 19 18 16 22 22 N 1.31411 * 120.00009 * 359.97438 * 21 19 18 23 23 Si 1.86809 * 120.00061 * 180.02562 * 21 19 18 24 24 H 1.48495 * 109.46830 * 359.97438 * 23 21 19 25 25 H 1.48502 * 109.46967 * 119.99727 * 23 21 19 26 26 H 1.48497 * 109.46912 * 239.99773 * 23 21 19 27 27 O 1.33962 * 108.76467 * 359.58084 * 5 4 3 28 28 H 1.08995 * 109.47273 * 269.98038 * 1 2 3 29 29 H 1.09006 * 109.46913 * 29.97663 * 1 2 3 30 30 H 1.08999 * 109.47563 * 149.97579 * 1 2 3 31 31 H 1.08006 * 126.16596 * 0.02562 * 3 2 1 32 32 H 1.09002 * 109.47060 * 209.69630 * 6 5 4 33 33 H 1.09001 * 109.47380 * 329.69717 * 6 5 4 34 34 H 1.09002 * 109.47153 * 299.99998 * 7 6 5 35 35 H 1.08998 * 109.47533 * 59.99628 * 7 6 5 36 36 H 1.09002 * 109.47103 * 300.00247 * 8 7 6 37 37 H 1.09001 * 109.47066 * 60.00169 * 8 7 6 38 38 H 0.96992 * 120.00336 * 0.02562 * 11 9 8 39 39 H 1.09002 * 109.47391 * 300.00314 * 12 11 9 40 40 H 1.09001 * 109.47271 * 60.00533 * 12 11 9 41 41 H 1.09001 * 109.47230 * 299.99452 * 13 12 11 42 42 H 1.08988 * 109.47529 * 60.00003 * 13 12 11 43 43 H 1.00898 * 110.99919 * 56.04318 * 14 13 12 44 44 H 1.08995 * 109.47513 * 300.00180 * 15 14 13 45 45 H 1.09006 * 109.46906 * 60.00415 * 15 14 13 46 46 H 0.97000 * 120.00052 * 0.02562 * 18 16 15 47 47 H 0.96999 * 119.99793 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3050 1.0805 0.0000 4 7 3.5782 0.6478 0.0052 5 6 3.5764 -0.6548 -0.0006 6 6 4.8004 -1.5341 -0.0011 7 6 5.2150 -1.8319 1.4412 8 6 6.4571 -2.7250 1.4408 9 6 6.8659 -3.0178 2.8614 10 8 6.2263 -2.5578 3.7835 11 7 7.9416 -3.7918 3.1073 12 6 8.3393 -4.0759 4.4883 13 6 9.5814 -4.9692 4.4878 14 7 9.9798 -5.2547 5.8727 15 6 11.1716 -6.1125 5.9114 16 6 11.5498 -6.3826 7.3450 17 8 10.8910 -5.9076 8.2458 18 7 12.6202 -7.1520 7.6261 19 6 12.9638 -7.3981 8.9303 20 1 12.3772 -6.9751 9.7324 21 6 14.0676 -8.1908 9.2201 22 7 14.7817 -8.7050 8.2442 23 14 14.5355 -8.5267 10.9972 24 1 13.5781 -7.8383 11.8997 25 1 14.4930 -9.9891 11.2522 26 1 15.9077 -8.0195 11.2520 27 8 2.3075 -1.0840 -0.0004 28 1 -0.3633 -0.0004 1.0276 29 1 -0.3633 0.8903 -0.5135 30 1 -0.3634 -0.8897 -0.5142 31 1 1.9822 2.1113 0.0004 32 1 4.5761 -2.4688 -0.5151 33 1 5.6146 -1.0232 -0.5151 34 1 5.4393 -0.8972 1.9551 35 1 4.4008 -2.3427 1.9552 36 1 6.2324 -3.6597 0.9270 37 1 7.2715 -2.2145 0.9267 38 1 8.4529 -4.1600 2.3699 39 1 8.5647 -3.1409 5.0012 40 1 7.5250 -4.5857 5.0033 41 1 9.3563 -5.9043 3.9749 42 1 10.3955 -4.4592 3.9730 43 1 9.2191 -5.6696 6.3896 44 1 10.9574 -7.0552 5.4081 45 1 11.9971 -5.6105 5.4067 46 1 13.1473 -7.5315 6.9057 47 1 15.5520 -9.2587 8.4465 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001129098495.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:37:04 Heat of formation + Delta-G solvation = -98.533833 kcal Electronic energy + Delta-G solvation = -26607.519132 eV Core-core repulsion = 22404.055261 eV Total energy + Delta-G solvation = -4203.463871 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.33266 -40.78421 -40.14689 -37.54264 -36.27618 -35.97896 -35.60914 -35.17607 -33.30055 -33.24839 -31.08556 -29.73141 -27.72124 -26.66369 -25.52161 -23.89832 -23.14670 -22.83606 -21.81824 -21.24692 -21.09547 -19.91931 -18.42897 -17.88016 -17.76949 -17.46577 -17.26650 -17.03609 -16.82587 -16.46647 -15.89824 -15.85162 -15.51448 -15.35258 -15.11568 -14.79284 -14.62768 -14.38238 -14.17254 -13.99310 -13.92025 -13.52692 -13.36337 -13.25229 -13.15515 -12.97090 -12.87326 -12.59532 -12.51136 -12.41061 -12.36512 -12.31442 -12.11715 -11.75310 -11.55886 -11.51730 -10.95834 -10.36604 -10.10665 -10.01394 -9.62874 -9.37378 -8.47175 -5.95636 0.42357 1.36597 1.42333 1.56230 1.62905 1.68291 1.71102 2.05019 2.10525 2.31235 3.02437 3.13072 3.20500 3.55305 3.75860 3.83273 3.91580 4.00806 4.01649 4.11451 4.13202 4.31368 4.32573 4.40045 4.47574 4.51527 4.60193 4.63160 4.64858 4.65813 4.70885 4.81750 4.92135 4.98025 5.05163 5.10731 5.18820 5.25338 5.36165 5.41183 5.43247 5.85619 6.07861 6.32516 6.59519 6.60738 6.72264 7.12952 7.31624 7.56260 8.12120 8.70387 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.047123 B = 0.001137 C = 0.001124 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 594.049261 B =24610.806304 C =24915.831747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.055 4.055 3 C -0.068 4.068 4 N -0.515 5.515 5 C 0.180 3.820 6 C -0.017 4.017 7 C -0.096 4.096 8 C -0.125 4.125 9 C 0.503 3.497 10 O -0.596 6.596 11 N -0.714 5.714 12 C 0.126 3.874 13 C 0.059 3.941 14 N -0.688 5.688 15 C 0.069 3.931 16 C 0.434 3.566 17 O -0.626 6.626 18 N -0.571 5.571 19 C -0.335 4.335 20 H 0.077 0.923 21 C -0.010 4.010 22 N -0.919 5.919 23 Si 0.991 3.009 24 H -0.275 1.275 25 H -0.270 1.270 26 H -0.271 1.271 27 O -0.216 6.216 28 H 0.093 0.907 29 H 0.114 0.886 30 H 0.085 0.915 31 H 0.202 0.798 32 H 0.124 0.876 33 H 0.126 0.874 34 H 0.050 0.950 35 H 0.053 0.947 36 H 0.135 0.865 37 H 0.131 0.869 38 H 0.421 0.579 39 H 0.053 0.947 40 H 0.052 0.948 41 H 0.059 0.941 42 H 0.094 0.906 43 H 0.345 0.655 44 H 0.074 0.926 45 H 0.110 0.890 46 H 0.398 0.602 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.848 11.357 -27.315 36.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.107 4.107 3 C -0.205 4.205 4 N -0.244 5.244 5 C -0.027 4.027 6 C -0.054 4.054 7 C -0.136 4.136 8 C -0.164 4.164 9 C 0.292 3.708 10 O -0.477 6.477 11 N -0.367 5.367 12 C 0.001 3.999 13 C -0.070 4.070 14 N -0.321 5.321 15 C -0.064 4.064 16 C 0.222 3.778 17 O -0.513 6.513 18 N -0.209 5.209 19 C -0.465 4.465 20 H 0.095 0.905 21 C -0.210 4.210 22 N -0.560 5.560 23 Si 0.815 3.185 24 H -0.200 1.200 25 H -0.195 1.195 26 H -0.196 1.196 27 O -0.104 6.104 28 H 0.111 0.889 29 H 0.133 0.867 30 H 0.104 0.896 31 H 0.219 0.781 32 H 0.142 0.858 33 H 0.144 0.856 34 H 0.069 0.931 35 H 0.072 0.928 36 H 0.153 0.847 37 H 0.149 0.851 38 H 0.259 0.741 39 H 0.071 0.929 40 H 0.070 0.930 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.163 0.837 44 H 0.092 0.908 45 H 0.128 0.872 46 H 0.232 0.768 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -21.660 12.769 -25.998 36.168 hybrid contribution -0.165 -1.512 0.513 1.605 sum -21.826 11.258 -25.485 35.392 Atomic orbital electron populations 1.20488 0.81178 1.05836 1.04874 1.24254 0.96673 0.83985 1.05835 1.23538 0.87526 1.01777 1.07684 1.70419 1.24431 1.10312 1.19251 1.26934 0.85116 0.90554 1.00078 1.20308 0.88332 0.98421 0.98351 1.21199 0.97600 0.99824 0.94928 1.21659 0.99552 1.03713 0.91522 1.21499 0.79408 0.76996 0.92944 1.90735 1.55021 1.53248 1.48690 1.45764 1.30376 1.51922 1.08671 1.21011 0.96094 0.99263 0.83540 1.22074 0.96901 0.98936 0.89047 1.59906 1.07938 1.50525 1.13749 1.21524 0.95245 0.97292 0.92293 1.20971 0.82570 0.82053 0.92228 1.90505 1.55317 1.55617 1.49864 1.41912 1.26081 1.44801 1.08085 1.19696 1.11787 1.30176 0.84843 0.90531 1.25991 0.95456 0.95850 1.03676 1.69665 1.18859 1.34043 1.33410 0.84904 0.78150 0.78265 0.77226 1.19973 1.19485 1.19575 1.84395 1.18362 1.37465 1.70134 0.88863 0.86709 0.89586 0.78088 0.85809 0.85616 0.93148 0.92784 0.84745 0.85088 0.74143 0.92899 0.92974 0.92311 0.88738 0.83660 0.90831 0.87245 0.76817 0.91256 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.39 10.43 71.24 0.74 0.35 16 2 C -0.05 -0.83 7.39 24.79 0.18 -0.65 16 3 C -0.07 -1.16 11.80 83.39 0.98 -0.18 16 4 N -0.51 -11.12 11.29 -303.83 -3.43 -14.55 16 5 C 0.18 3.24 7.60 88.34 0.67 3.92 16 6 C -0.02 -0.16 5.84 29.85 0.17 0.02 16 7 C -0.10 -1.31 4.49 30.59 0.14 -1.18 16 8 C -0.13 -0.98 5.70 29.84 0.17 -0.81 16 9 C 0.50 9.34 7.83 87.66 0.69 10.02 16 10 O -0.60 -18.24 15.98 -3.05 -0.05 -18.29 16 11 N -0.71 -10.46 5.56 -463.06 -2.57 -13.04 16 12 C 0.13 2.71 5.93 86.38 0.51 3.22 16 13 C 0.06 1.15 5.80 86.30 0.50 1.65 16 14 N -0.69 -20.72 6.13 -517.95 -3.17 -23.90 16 15 C 0.07 2.21 6.17 85.56 0.53 2.73 16 16 C 0.43 20.46 7.82 87.66 0.69 21.14 16 17 O -0.63 -35.11 15.78 -3.06 -0.05 -35.16 16 18 N -0.57 -28.99 5.29 -306.98 -1.62 -30.61 16 19 C -0.34 -19.08 9.68 84.04 0.81 -18.26 16 20 H 0.08 4.69 7.16 -2.91 -0.02 4.67 16 21 C -0.01 -0.52 5.50 84.93 0.47 -0.05 16 22 N -0.92 -49.00 13.05 21.66 0.28 -48.72 16 23 Si 0.99 42.87 29.55 68.60 2.03 44.90 16 24 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 25 H -0.27 -11.11 7.11 99.48 0.71 -10.41 16 26 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 27 O -0.22 -4.02 10.78 -3.72 -0.04 -4.06 16 28 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 29 H 0.11 0.14 8.14 -2.38 -0.02 0.12 16 30 H 0.09 0.39 8.14 -2.39 -0.02 0.37 16 31 H 0.20 2.24 8.06 -2.91 -0.02 2.22 16 32 H 0.12 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.13 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.99 8.10 -2.39 -0.02 0.97 16 35 H 0.05 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.13 0.15 8.14 -2.39 -0.02 0.13 16 37 H 0.13 0.28 8.14 -2.39 -0.02 0.26 16 38 H 0.42 2.66 8.47 -92.71 -0.79 1.87 16 39 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.05 1.29 8.14 -2.39 -0.02 1.27 16 41 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.09 1.55 8.14 -2.39 -0.02 1.54 16 43 H 0.34 11.21 8.43 -89.70 -0.76 10.45 16 44 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 45 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 46 H 0.40 18.90 7.90 -92.71 -0.73 18.16 16 47 H 0.28 13.82 8.31 -92.71 -0.77 13.05 16 Total: -1.00 -86.31 407.07 -2.63 -88.94 By element: Atomic # 1 Polarization: 33.81 SS G_CDS: -1.26 Total: 32.55 kcal Atomic # 6 Polarization: 14.67 SS G_CDS: 7.26 Total: 21.93 kcal Atomic # 7 Polarization: -120.29 SS G_CDS: -10.52 Total: -130.81 kcal Atomic # 8 Polarization: -57.38 SS G_CDS: -0.14 Total: -57.51 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -86.31 -2.63 -88.94 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001129098495.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.590 kcal (2) G-P(sol) polarization free energy of solvation -86.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -88.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.534 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds