Wall clock time and date at job start Tue Mar 31 2020 20:39:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 O 1.34256 * 126.52501 * 2 1 4 4 C 1.34047 * 108.22397 * 180.22698 * 3 2 1 5 5 N 1.29935 * 109.24535 * 359.77510 * 4 3 2 6 6 C 1.36069 * 108.47546 * 359.97438 * 5 4 3 7 7 C 1.47422 * 126.44951 * 179.97438 * 6 5 4 8 8 O 1.21607 * 119.99999 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99697 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99674 * 179.97438 * 9 7 6 11 11 H 1.09010 * 109.47039 * 35.00581 * 10 9 7 12 12 C 1.52996 * 109.47641 * 275.00322 * 10 9 7 13 13 C 1.53004 * 109.46893 * 155.00206 * 10 9 7 14 14 C 1.53002 * 109.47119 * 295.00224 * 13 10 9 15 15 H 1.09003 * 109.47094 * 54.99695 * 14 13 10 16 16 C 1.52994 * 109.47222 * 175.00007 * 14 13 10 17 17 N 1.46906 * 109.47092 * 295.00039 * 14 13 10 18 18 C 1.46901 * 110.99793 * 155.00227 * 17 14 13 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.47117 * 59.99412 * 26 24 22 28 28 H 1.48498 * 109.47600 * 179.97438 * 26 24 22 29 29 H 1.48503 * 109.47088 * 299.99811 * 26 24 22 30 30 H 1.08991 * 109.47282 * 270.16388 * 1 2 3 31 31 H 1.09008 * 109.46558 * 30.16237 * 1 2 3 32 32 H 1.08994 * 109.47382 * 150.15487 * 1 2 3 33 33 H 1.08004 * 125.37976 * 179.73542 * 4 3 2 34 34 H 0.96996 * 120.00154 * 0.02562 * 9 7 6 35 35 H 1.09001 * 109.46880 * 300.00288 * 12 10 9 36 36 H 1.09004 * 109.46810 * 60.00123 * 12 10 9 37 37 H 1.08992 * 109.47414 * 179.97438 * 12 10 9 38 38 H 1.08998 * 109.47091 * 175.00582 * 13 10 9 39 39 H 1.08995 * 109.46967 * 55.00004 * 13 10 9 40 40 H 1.09003 * 109.47340 * 59.99839 * 16 14 13 41 41 H 1.08995 * 109.47731 * 179.97438 * 16 14 13 42 42 H 1.08996 * 109.47268 * 300.00419 * 16 14 13 43 43 H 1.00898 * 110.99995 * 278.95304 * 17 14 13 44 44 H 1.09002 * 109.47401 * 59.99808 * 18 17 14 45 45 H 1.09001 * 109.46874 * 299.99821 * 18 17 14 46 46 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 47 47 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0050 5 7 3.6002 -0.6412 -0.0034 6 6 2.3170 -1.0936 0.0035 7 6 1.8852 -2.5032 0.0070 8 8 0.7002 -2.7762 0.0127 9 7 2.8040 -3.4894 0.0039 10 6 2.3749 -4.8901 0.0079 11 1 1.4607 -4.9918 -0.5770 12 6 2.1123 -5.3390 1.4468 13 6 3.4727 -5.7615 -0.6059 14 6 3.6485 -5.3962 -2.0812 15 1 3.8415 -4.3271 -2.1703 16 6 4.8282 -6.1776 -2.6629 17 7 2.4245 -5.7360 -2.8191 18 6 2.2928 -4.9120 -4.0281 19 6 1.0289 -5.2887 -4.7574 20 8 0.3086 -6.1577 -4.3134 21 7 0.6986 -4.6591 -5.9024 22 6 -0.4515 -5.0014 -6.5656 23 1 -1.0924 -5.7758 -6.1707 24 6 -0.7918 -4.3529 -7.7463 25 7 -0.0116 -3.4110 -8.2271 26 14 -2.3591 -4.8187 -8.6496 27 1 -3.5283 -4.5879 -7.7637 28 1 -2.4925 -3.9855 -9.8716 29 1 -2.3028 -6.2527 -9.0314 30 1 -0.3633 0.0029 1.0276 31 1 -0.3633 0.8886 -0.5164 32 1 -0.3634 -0.8913 -0.5114 33 1 4.4490 1.2977 -0.0104 34 1 3.7492 -3.2716 -0.0003 35 1 3.0265 -5.2373 2.0317 36 1 1.3302 -4.7183 1.8840 37 1 1.7927 -6.3810 1.4497 38 1 3.1922 -6.8115 -0.5225 39 1 4.4098 -5.5924 -0.0755 40 1 4.6353 -7.2467 -2.5738 41 1 4.9533 -5.9178 -3.7141 42 1 5.7364 -5.9255 -2.1154 43 1 2.4007 -6.7187 -3.0469 44 1 3.1512 -5.0810 -4.6783 45 1 2.2510 -3.8595 -3.7476 46 1 1.2745 -3.9640 -6.2573 47 1 -0.2494 -2.9580 -9.0512 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133857205.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:07 Heat of formation + Delta-G solvation = -60.013685 kcal Electronic energy + Delta-G solvation = -29737.283064 eV Core-core repulsion = 25535.489552 eV Total energy + Delta-G solvation = -4201.793512 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -43.62277 -39.70304 -38.37968 -37.19347 -35.10605 -35.00423 -33.82350 -32.52909 -31.62996 -31.12963 -30.25271 -27.51412 -26.83169 -26.15301 -24.27802 -23.84730 -22.42744 -21.25020 -20.65065 -20.29930 -19.20723 -18.36543 -17.82572 -17.08344 -16.42498 -16.24664 -15.76402 -15.34459 -15.06996 -14.75362 -14.61596 -14.51708 -14.21430 -13.84794 -13.78016 -13.56526 -13.41745 -13.20124 -13.05214 -12.71289 -12.56945 -12.37504 -12.17602 -12.09190 -11.90705 -11.56639 -11.51142 -11.39102 -11.07206 -11.01786 -10.97651 -10.77731 -10.68243 -10.40464 -10.16258 -10.00553 -9.44561 -9.18150 -8.89312 -8.38839 -7.95716 -7.89058 -6.36510 -3.77047 0.95707 1.87942 2.36489 3.14626 3.23887 3.28783 3.32331 3.33720 3.84778 3.97649 4.15497 4.40273 4.46902 4.61858 4.74650 4.98358 5.01188 5.19291 5.20770 5.24814 5.30383 5.31679 5.38272 5.41777 5.51941 5.58330 5.66740 5.71820 5.75480 5.83955 5.85661 5.87150 5.94826 6.00811 6.12296 6.14019 6.23032 6.34226 6.40327 6.60977 7.18443 7.31663 7.59928 7.60489 7.76505 8.11826 8.25112 8.67249 9.23312 9.60272 10.12215 10.81364 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008931 B = 0.003236 C = 0.002684 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3134.535785 B = 8649.545139 C =10430.725181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.046 3.954 3 O -0.201 6.201 4 C 0.170 3.830 5 N -0.464 5.464 6 C -0.079 4.079 7 C 0.602 3.398 8 O -0.525 6.525 9 N -0.705 5.705 10 C 0.143 3.857 11 H 0.112 0.888 12 C -0.162 4.162 13 C -0.112 4.112 14 C 0.080 3.920 15 H 0.076 0.924 16 C -0.183 4.183 17 N -0.659 5.659 18 C 0.054 3.946 19 C 0.443 3.557 20 O -0.581 6.581 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.904 5.904 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.091 0.909 31 H 0.081 0.919 32 H 0.116 0.884 33 H 0.254 0.746 34 H 0.402 0.598 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.058 0.942 43 H 0.349 0.651 44 H 0.041 0.959 45 H 0.081 0.919 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.032 6.758 18.213 22.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.010 4.010 3 O -0.088 6.088 4 C -0.058 4.058 5 N -0.193 5.193 6 C -0.199 4.199 7 C 0.387 3.613 8 O -0.402 6.402 9 N -0.356 5.356 10 C 0.040 3.960 11 H 0.130 0.870 12 C -0.220 4.220 13 C -0.150 4.150 14 C -0.030 4.030 15 H 0.094 0.906 16 C -0.243 4.243 17 N -0.291 5.291 18 C -0.079 4.079 19 C 0.228 3.772 20 O -0.465 6.465 21 N -0.202 5.202 22 C -0.427 4.427 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.110 0.890 31 H 0.100 0.900 32 H 0.135 0.865 33 H 0.269 0.731 34 H 0.237 0.763 35 H 0.070 0.930 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.099 0.901 39 H 0.084 0.916 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.077 0.923 43 H 0.169 0.831 44 H 0.059 0.941 45 H 0.099 0.901 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.785 6.105 18.706 22.439 hybrid contribution 0.595 0.619 -1.402 1.644 sum 11.380 6.724 17.304 21.775 Atomic orbital electron populations 1.20650 0.82449 1.05911 1.04590 1.23829 0.95301 0.83301 0.98587 1.84378 1.18563 1.36376 1.69440 1.27952 0.85330 0.91245 1.01304 1.70701 1.21855 1.10163 1.16579 1.21577 0.88726 0.95854 1.13711 1.16651 0.85669 0.82433 0.76539 1.90824 1.16174 1.83031 1.50147 1.45824 1.09608 1.05988 1.74138 1.21069 1.00122 0.78578 0.96265 0.86973 1.22181 1.01511 1.01776 0.96556 1.21861 0.97927 1.00471 0.94742 1.21605 0.88251 0.99715 0.93462 0.90552 1.22528 0.99294 1.01009 1.01421 1.60159 1.35854 1.09875 1.23215 1.21652 0.96600 0.98483 0.91178 1.19827 0.88330 0.85944 0.83094 1.90520 1.53728 1.34488 1.67797 1.41851 1.22748 1.34888 1.20701 1.19655 0.99666 1.19457 1.03963 0.88002 1.25242 0.99322 0.96121 0.97253 1.69611 1.38117 1.24504 1.22296 0.85929 0.81495 0.78421 0.78441 1.19874 1.21019 1.19948 0.89041 0.90015 0.86546 0.73083 0.76308 0.93047 0.92296 0.91505 0.90053 0.91560 0.92318 0.92573 0.92321 0.83147 0.94095 0.90080 0.77567 0.91911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 9.87 36.01 0.36 -0.46 16 2 C 0.05 0.55 7.44 -35.08 -0.26 0.29 16 3 O -0.20 -2.04 10.73 6.52 0.07 -1.97 16 4 C 0.17 1.42 13.19 51.96 0.69 2.11 16 5 N -0.46 -5.25 11.06 -11.48 -0.13 -5.38 16 6 C -0.08 -1.04 6.99 -83.02 -0.58 -1.62 16 7 C 0.60 8.85 7.78 -12.52 -0.10 8.75 16 8 O -0.53 -9.20 14.47 5.27 0.08 -9.13 16 9 N -0.70 -8.69 4.44 -54.88 -0.24 -8.94 16 10 C 0.14 1.78 2.52 -67.93 -0.17 1.61 16 11 H 0.11 1.86 7.05 -51.92 -0.37 1.49 16 12 C -0.16 -1.76 9.48 37.16 0.35 -1.41 16 13 C -0.11 -1.16 4.43 -26.73 -0.12 -1.28 16 14 C 0.08 0.97 2.53 -67.71 -0.17 0.80 16 15 H 0.08 0.97 7.28 -51.93 -0.38 0.59 16 16 C -0.18 -1.92 9.16 37.15 0.34 -1.58 16 17 N -0.66 -10.68 5.25 -107.99 -0.57 -11.25 16 18 C 0.05 0.99 5.97 -4.97 -0.03 0.96 16 19 C 0.44 10.83 7.82 -10.98 -0.09 10.75 16 20 O -0.58 -16.21 15.78 5.55 0.09 -16.12 16 21 N -0.57 -14.82 5.29 -10.96 -0.06 -14.88 16 22 C -0.30 -8.54 9.68 -14.94 -0.14 -8.68 16 23 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -25.13 13.05 55.50 0.72 -24.41 16 26 Si 0.93 21.54 29.55 -169.99 -5.02 16.51 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 29 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 30 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.08 0.68 8.14 -51.92 -0.42 0.25 16 32 H 0.12 1.45 6.48 -51.93 -0.34 1.12 16 33 H 0.25 0.72 8.06 -52.48 -0.42 0.30 16 34 H 0.40 4.29 8.33 -40.82 -0.34 3.95 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.40 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 41 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.35 5.83 8.17 -39.29 -0.32 5.50 16 44 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 45 H 0.08 1.48 8.06 -51.93 -0.42 1.06 16 46 H 0.39 9.86 7.90 -40.82 -0.32 9.54 16 47 H 0.27 7.14 8.31 -40.82 -0.34 6.80 16 LS Contribution 398.25 15.07 6.00 6.00 Total: -1.00 -34.92 398.25 -6.08 -41.00 By element: Atomic # 1 Polarization: 24.80 SS G_CDS: -6.99 Total: 17.81 kcal Atomic # 6 Polarization: 10.77 SS G_CDS: -0.02 Total: 10.75 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -0.27 Total: -64.85 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: 0.23 Total: -27.22 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.92 -6.08 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133857205.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.017 kcal (2) G-P(sol) polarization free energy of solvation -34.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.014 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds