Wall clock time and date at job start Tue Mar 31 2020 20:39:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34262 * 126.52736 * 2 1 4 4 C 1.34050 * 108.22690 * 180.22528 * 3 2 1 5 5 N 1.29944 * 109.24308 * 359.76885 * 4 3 2 6 6 C 1.36072 * 108.47517 * 359.97438 * 5 4 3 7 7 C 1.47417 * 126.44451 * 179.97438 * 6 5 4 8 8 O 1.21612 * 119.99476 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00375 * 0.03011 * 7 6 5 10 10 C 1.46501 * 120.00112 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47221 * 325.00536 * 10 9 7 12 12 C 1.53009 * 109.46715 * 84.99994 * 10 9 7 13 13 C 1.52999 * 109.47174 * 204.99652 * 10 9 7 14 14 C 1.53006 * 109.46626 * 65.00624 * 13 10 9 15 15 H 1.08992 * 109.47046 * 304.99570 * 14 13 10 16 16 C 1.52999 * 109.46811 * 184.99727 * 14 13 10 17 17 N 1.46897 * 109.47346 * 65.00011 * 14 13 10 18 18 C 1.46898 * 111.00134 * 205.00231 * 17 14 13 19 19 C 1.50700 * 109.47132 * 179.97438 * 18 17 14 20 20 O 1.21288 * 120.00123 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99935 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00096 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99533 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99884 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99800 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99776 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46957 * 59.99950 * 26 24 22 28 28 H 1.48497 * 109.47083 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47146 * 299.99720 * 26 24 22 30 30 H 1.08995 * 109.47361 * 270.16612 * 1 2 3 31 31 H 1.09009 * 109.46936 * 30.16549 * 1 2 3 32 32 H 1.09000 * 109.47309 * 150.16018 * 1 2 3 33 33 H 1.07991 * 125.37928 * 179.73155 * 4 3 2 34 34 H 0.97002 * 119.99909 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47112 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.46851 * 300.00329 * 12 10 9 37 37 H 1.09001 * 109.46642 * 60.00008 * 12 10 9 38 38 H 1.08993 * 109.47839 * 305.00693 * 13 10 9 39 39 H 1.09000 * 109.47160 * 185.00255 * 13 10 9 40 40 H 1.09002 * 109.46911 * 179.97438 * 16 14 13 41 41 H 1.09009 * 109.47170 * 300.00068 * 16 14 13 42 42 H 1.09001 * 109.47273 * 59.99848 * 16 14 13 43 43 H 1.00906 * 110.99744 * 328.95423 * 17 14 13 44 44 H 1.09001 * 109.46587 * 299.99529 * 18 17 14 45 45 H 1.08991 * 109.47405 * 59.99396 * 18 17 14 46 46 H 0.96996 * 119.99731 * 0.02562 * 21 19 18 47 47 H 0.97003 * 119.99357 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0050 5 7 3.6002 -0.6413 -0.0032 6 6 2.3169 -1.0937 0.0038 7 6 1.8853 -2.5032 0.0075 8 8 0.7002 -2.7761 0.0132 9 7 2.8039 -3.4894 0.0045 10 6 2.3749 -4.8902 0.0087 11 1 1.4664 -4.9901 0.6026 12 6 2.0984 -5.3431 -1.4264 13 6 3.4785 -5.7597 0.6143 14 6 3.6686 -5.3903 2.0868 15 1 3.8624 -4.3210 2.1710 16 6 4.8539 -6.1701 2.6594 17 7 2.4519 -5.7280 2.8374 18 6 2.3317 -4.9005 4.0452 19 6 1.0743 -5.2742 4.7871 20 8 0.3494 -6.1440 4.3523 21 7 0.7553 -4.6420 5.9339 22 6 -0.3888 -4.9816 6.6086 23 1 -1.0343 -5.7561 6.2213 24 6 -0.7179 -4.3294 7.7906 25 7 0.0673 -3.3868 8.2614 26 14 -2.2764 -4.7927 8.7102 27 1 -2.2163 -6.2255 9.0957 28 1 -2.3976 -3.9566 9.9314 29 1 -3.4540 -4.5646 7.8347 30 1 -0.3634 0.0030 1.0276 31 1 -0.3633 0.8886 -0.5164 32 1 -0.3634 -0.8914 -0.5113 33 1 4.4489 1.2976 -0.0104 34 1 3.7492 -3.2717 -0.0004 35 1 1.7796 -6.3854 -1.4233 36 1 1.3122 -4.7235 -1.8578 37 1 3.0069 -5.2431 -2.0203 38 1 4.4105 -5.5923 0.0745 39 1 3.1973 -6.8100 0.5366 40 1 4.9896 -5.9065 3.7083 41 1 4.6601 -7.2395 2.5751 42 1 5.7568 -5.9195 2.1024 43 1 1.6320 -5.6400 2.2558 44 1 3.1963 -5.0677 4.6876 45 1 2.2872 -3.8489 3.7623 46 1 1.3349 -3.9462 6.2814 47 1 -0.1623 -2.9317 9.0867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001133857206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:13 Heat of formation + Delta-G solvation = -58.406469 kcal Electronic energy + Delta-G solvation = -29770.696631 eV Core-core repulsion = 25568.972813 eV Total energy + Delta-G solvation = -4201.723818 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -43.70649 -39.94379 -38.39318 -37.31099 -35.15696 -34.98615 -33.82059 -32.62449 -31.70805 -31.13506 -30.40852 -27.61327 -27.03695 -26.11419 -24.39108 -23.85466 -22.53829 -21.38107 -20.73421 -20.09900 -19.21123 -18.47668 -17.82679 -17.16664 -16.58440 -16.32507 -16.12082 -15.35307 -15.23175 -14.97429 -14.80389 -14.41915 -14.30321 -13.84762 -13.81142 -13.67582 -13.49988 -13.27514 -12.94059 -12.68302 -12.60851 -12.40704 -12.21613 -12.04121 -11.78979 -11.72593 -11.63352 -11.47182 -11.17986 -11.10834 -11.00934 -10.88315 -10.52656 -10.40125 -10.18513 -10.15785 -9.44268 -9.33140 -9.06985 -8.36360 -7.98518 -7.89468 -6.36160 -3.76613 0.85954 1.77789 2.27964 2.96627 3.16011 3.24232 3.28973 3.33982 3.75305 3.98039 4.15707 4.36774 4.39426 4.48980 4.63493 4.77865 4.91867 5.03714 5.15363 5.17257 5.27128 5.29707 5.30995 5.43623 5.45311 5.56292 5.58142 5.68102 5.75006 5.79072 5.81781 5.85953 5.89133 5.98298 6.06241 6.08363 6.14212 6.31201 6.38401 6.42714 7.07664 7.33154 7.42812 7.60319 7.75754 8.05400 8.12222 8.67701 9.23635 9.60609 10.12631 10.81748 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008955 B = 0.003235 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.112072 B = 8653.232562 C =10421.815487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.049 3.951 3 O -0.200 6.200 4 C 0.173 3.827 5 N -0.464 5.464 6 C -0.082 4.082 7 C 0.602 3.398 8 O -0.527 6.527 9 N -0.707 5.707 10 C 0.134 3.866 11 H 0.095 0.905 12 C -0.160 4.160 13 C -0.128 4.128 14 C 0.081 3.919 15 H 0.042 0.958 16 C -0.139 4.139 17 N -0.662 5.662 18 C 0.053 3.947 19 C 0.443 3.557 20 O -0.582 6.582 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.904 5.904 26 Si 0.930 3.070 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.113 0.887 33 H 0.255 0.745 34 H 0.406 0.594 35 H 0.070 0.930 36 H 0.060 0.940 37 H 0.056 0.944 38 H 0.075 0.925 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.062 0.938 42 H 0.051 0.949 43 H 0.348 0.652 44 H 0.084 0.916 45 H 0.039 0.961 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.064 7.994 -19.613 23.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.007 4.007 3 O -0.086 6.086 4 C -0.056 4.056 5 N -0.193 5.193 6 C -0.202 4.202 7 C 0.388 3.612 8 O -0.404 6.404 9 N -0.359 5.359 10 C 0.030 3.970 11 H 0.113 0.887 12 C -0.219 4.219 13 C -0.166 4.166 14 C -0.029 4.029 15 H 0.060 0.940 16 C -0.197 4.197 17 N -0.297 5.297 18 C -0.080 4.080 19 C 0.228 3.772 20 O -0.466 6.466 21 N -0.202 5.202 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.545 5.545 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.115 0.885 31 H 0.099 0.901 32 H 0.131 0.869 33 H 0.270 0.730 34 H 0.242 0.758 35 H 0.089 0.911 36 H 0.079 0.921 37 H 0.075 0.925 38 H 0.093 0.907 39 H 0.110 0.890 40 H 0.074 0.926 41 H 0.081 0.919 42 H 0.070 0.930 43 H 0.170 0.830 44 H 0.102 0.898 45 H 0.057 0.943 46 H 0.224 0.776 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.517 6.410 -19.393 22.974 hybrid contribution -0.383 1.870 0.500 1.973 sum 10.134 8.280 -18.893 22.982 Atomic orbital electron populations 1.20658 0.82413 1.05379 1.05218 1.23835 0.95314 0.83302 0.98264 1.84389 1.18573 1.36303 1.69377 1.27976 0.85323 0.91195 1.01090 1.70705 1.21718 1.10224 1.16615 1.21477 0.88863 0.95630 1.14183 1.16701 0.85593 0.82598 0.76329 1.90830 1.16156 1.83133 1.50254 1.45863 1.09995 1.05656 1.74364 1.21164 0.99055 0.79404 0.97398 0.88746 1.22148 1.01921 1.01986 0.95808 1.22102 0.98425 1.00928 0.95181 1.21542 0.91959 0.97592 0.91846 0.93997 1.21790 0.95918 1.01144 1.00853 1.60232 1.04665 1.56885 1.07932 1.21682 0.98590 0.94593 0.93158 1.19819 0.88025 0.85766 0.83581 1.90515 1.53261 1.34116 1.68663 1.41848 1.23029 1.34743 1.20539 1.19661 0.99938 1.19368 1.03787 0.87993 1.25246 0.99313 0.96113 0.97273 1.69613 1.38056 1.24402 1.22448 0.85925 0.81392 0.78477 0.78468 1.19897 1.21016 1.19917 0.88506 0.90080 0.86855 0.72977 0.75814 0.91145 0.92063 0.92528 0.90669 0.88955 0.92626 0.91857 0.92990 0.83035 0.89758 0.94325 0.77555 0.91913 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.77 9.87 36.01 0.36 -0.41 16 2 C 0.05 0.56 7.44 -35.08 -0.26 0.30 16 3 O -0.20 -1.94 10.73 6.50 0.07 -1.87 16 4 C 0.17 1.37 13.19 51.96 0.69 2.06 16 5 N -0.46 -5.05 11.06 -11.48 -0.13 -5.18 16 6 C -0.08 -1.03 6.99 -83.02 -0.58 -1.61 16 7 C 0.60 8.35 7.78 -12.52 -0.10 8.25 16 8 O -0.53 -8.65 14.47 5.27 0.08 -8.57 16 9 N -0.71 -8.16 4.44 -54.88 -0.24 -8.40 16 10 C 0.13 1.52 2.48 -67.93 -0.17 1.36 16 11 H 0.09 1.37 5.72 -51.93 -0.30 1.07 16 12 C -0.16 -1.58 9.48 37.16 0.35 -1.22 16 13 C -0.13 -1.29 4.35 -26.73 -0.12 -1.41 16 14 C 0.08 1.02 2.59 -67.71 -0.18 0.85 16 15 H 0.04 0.55 7.28 -51.93 -0.38 0.17 16 16 C -0.14 -1.61 9.41 37.16 0.35 -1.26 16 17 N -0.66 -11.25 5.93 -108.00 -0.64 -11.89 16 18 C 0.05 1.00 5.97 -4.98 -0.03 0.97 16 19 C 0.44 11.03 7.82 -10.98 -0.09 10.95 16 20 O -0.58 -16.47 15.78 5.55 0.09 -16.38 16 21 N -0.56 -14.97 5.29 -10.96 -0.06 -15.03 16 22 C -0.30 -8.60 9.68 -14.93 -0.14 -8.74 16 23 H 0.10 3.07 7.16 -52.49 -0.38 2.70 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -25.22 13.05 55.50 0.72 -24.50 16 26 Si 0.93 21.61 29.55 -169.99 -5.02 16.59 16 27 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 28 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 29 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 31 H 0.08 0.57 8.14 -51.92 -0.42 0.15 16 32 H 0.11 1.21 6.49 -51.93 -0.34 0.87 16 33 H 0.25 0.63 8.06 -52.49 -0.42 0.21 16 34 H 0.41 4.11 8.33 -40.82 -0.34 3.77 16 35 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 36 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 38 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 39 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 40 H 0.05 0.70 7.45 -51.93 -0.39 0.31 16 41 H 0.06 0.76 8.14 -51.92 -0.42 0.34 16 42 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.35 6.31 6.11 -39.29 -0.24 6.07 16 44 H 0.08 1.49 7.44 -51.93 -0.39 1.11 16 45 H 0.04 0.71 8.05 -51.93 -0.42 0.29 16 46 H 0.39 9.96 7.90 -40.82 -0.32 9.63 16 47 H 0.27 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 395.75 15.07 5.96 5.96 Total: -1.00 -35.21 395.75 -6.03 -41.24 By element: Atomic # 1 Polarization: 24.31 SS G_CDS: -6.84 Total: 17.46 kcal Atomic # 6 Polarization: 10.59 SS G_CDS: -0.01 Total: 10.57 kcal Atomic # 7 Polarization: -64.65 SS G_CDS: -0.35 Total: -65.00 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: 0.23 Total: -26.82 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.21 -6.03 -41.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133857206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.169 kcal (2) G-P(sol) polarization free energy of solvation -35.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.379 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.028 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds