Wall clock time and date at job start Tue Mar 31 2020 20:39:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.34262 * 126.52736 * 2 1 4 4 C 1.34050 * 108.22690 * 180.22528 * 3 2 1 5 5 N 1.29944 * 109.24308 * 359.76885 * 4 3 2 6 6 C 1.36072 * 108.47517 * 359.97438 * 5 4 3 7 7 C 1.47417 * 126.44451 * 179.97438 * 6 5 4 8 8 O 1.21612 * 119.99476 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00375 * 0.03011 * 7 6 5 10 10 C 1.46501 * 120.00112 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47221 * 325.00536 * 10 9 7 12 12 C 1.53009 * 109.46715 * 84.99994 * 10 9 7 13 13 C 1.52999 * 109.47174 * 204.99652 * 10 9 7 14 14 C 1.53006 * 109.46626 * 65.00624 * 13 10 9 15 15 H 1.08992 * 109.47046 * 304.99570 * 14 13 10 16 16 C 1.52999 * 109.46811 * 184.99727 * 14 13 10 17 17 N 1.46897 * 109.47346 * 65.00011 * 14 13 10 18 18 C 1.46898 * 111.00134 * 205.00231 * 17 14 13 19 19 C 1.50700 * 109.47132 * 179.97438 * 18 17 14 20 20 O 1.21288 * 120.00123 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99935 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00096 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99533 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99884 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99800 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99776 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46957 * 59.99950 * 26 24 22 28 28 H 1.48497 * 109.47083 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47146 * 299.99720 * 26 24 22 30 30 H 1.08995 * 109.47361 * 270.16612 * 1 2 3 31 31 H 1.09009 * 109.46936 * 30.16549 * 1 2 3 32 32 H 1.09000 * 109.47309 * 150.16018 * 1 2 3 33 33 H 1.07991 * 125.37928 * 179.73155 * 4 3 2 34 34 H 0.97002 * 119.99909 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47112 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.46851 * 300.00329 * 12 10 9 37 37 H 1.09001 * 109.46642 * 60.00008 * 12 10 9 38 38 H 1.08993 * 109.47839 * 305.00693 * 13 10 9 39 39 H 1.09000 * 109.47160 * 185.00255 * 13 10 9 40 40 H 1.09002 * 109.46911 * 179.97438 * 16 14 13 41 41 H 1.09009 * 109.47170 * 300.00068 * 16 14 13 42 42 H 1.09001 * 109.47273 * 59.99848 * 16 14 13 43 43 H 1.00906 * 110.99744 * 328.95423 * 17 14 13 44 44 H 1.09001 * 109.46587 * 299.99529 * 18 17 14 45 45 H 1.08991 * 109.47405 * 59.99396 * 18 17 14 46 46 H 0.96996 * 119.99731 * 0.02562 * 21 19 18 47 47 H 0.97003 * 119.99357 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3061 1.0789 0.0000 4 6 3.5788 0.6580 -0.0050 5 7 3.6002 -0.6413 -0.0032 6 6 2.3169 -1.0937 0.0038 7 6 1.8853 -2.5032 0.0075 8 8 0.7002 -2.7761 0.0132 9 7 2.8039 -3.4894 0.0045 10 6 2.3749 -4.8902 0.0087 11 1 1.4664 -4.9901 0.6026 12 6 2.0984 -5.3431 -1.4264 13 6 3.4785 -5.7597 0.6143 14 6 3.6686 -5.3903 2.0868 15 1 3.8624 -4.3210 2.1710 16 6 4.8539 -6.1701 2.6594 17 7 2.4519 -5.7280 2.8374 18 6 2.3317 -4.9005 4.0452 19 6 1.0743 -5.2742 4.7871 20 8 0.3494 -6.1440 4.3523 21 7 0.7553 -4.6420 5.9339 22 6 -0.3888 -4.9816 6.6086 23 1 -1.0343 -5.7561 6.2213 24 6 -0.7179 -4.3294 7.7906 25 7 0.0673 -3.3868 8.2614 26 14 -2.2764 -4.7927 8.7102 27 1 -2.2163 -6.2255 9.0957 28 1 -2.3976 -3.9566 9.9314 29 1 -3.4540 -4.5646 7.8347 30 1 -0.3634 0.0030 1.0276 31 1 -0.3633 0.8886 -0.5164 32 1 -0.3634 -0.8914 -0.5113 33 1 4.4489 1.2976 -0.0104 34 1 3.7492 -3.2717 -0.0004 35 1 1.7796 -6.3854 -1.4233 36 1 1.3122 -4.7235 -1.8578 37 1 3.0069 -5.2431 -2.0203 38 1 4.4105 -5.5923 0.0745 39 1 3.1973 -6.8100 0.5366 40 1 4.9896 -5.9065 3.7083 41 1 4.6601 -7.2395 2.5751 42 1 5.7568 -5.9195 2.1024 43 1 1.6320 -5.6400 2.2558 44 1 3.1963 -5.0677 4.6876 45 1 2.2872 -3.8489 3.7623 46 1 1.3349 -3.9462 6.2814 47 1 -0.1623 -2.9317 9.0867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133857206.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:12 Heat of formation + Delta-G solvation = -88.232277 kcal Electronic energy + Delta-G solvation = -29771.989975 eV Core-core repulsion = 25568.972813 eV Total energy + Delta-G solvation = -4203.017162 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.46755 -40.97762 -40.20473 -38.58976 -36.30253 -35.94268 -35.78588 -33.41906 -33.34883 -32.73908 -31.51338 -28.40093 -28.22702 -27.59609 -25.73810 -25.18733 -23.33326 -22.27371 -21.68178 -21.14690 -21.12923 -19.95590 -19.32703 -17.95018 -17.90544 -17.53580 -17.05974 -16.96723 -16.56574 -16.24383 -15.98645 -15.74223 -15.52721 -15.48876 -15.22047 -14.65187 -14.54528 -14.32301 -14.06134 -13.91959 -13.59779 -13.49207 -13.42743 -13.32730 -13.18387 -12.90691 -12.84915 -12.70777 -12.47230 -12.45239 -12.24237 -12.12529 -11.94758 -11.87735 -11.53300 -11.51223 -11.22186 -10.39180 -10.27936 -10.04888 -9.91068 -9.35477 -8.48838 -5.98181 0.00350 1.02686 1.38139 1.39498 1.51152 1.54047 2.00772 2.07579 2.19060 2.27569 2.90406 3.07750 3.17523 3.47024 3.59562 3.61383 3.79048 3.86441 4.10690 4.20279 4.23301 4.34506 4.38636 4.39224 4.47051 4.50370 4.51969 4.60906 4.74568 4.79347 4.82739 4.92635 4.98914 5.01859 5.06485 5.16344 5.19684 5.25630 5.37904 5.44603 5.46203 5.88898 6.10610 6.25080 6.37454 6.55840 6.56656 7.07808 7.09159 7.51434 8.06950 8.68589 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008955 B = 0.003235 C = 0.002686 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3126.112072 B = 8653.232562 C =10421.815487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.040 3.960 3 O -0.200 6.200 4 C 0.195 3.805 5 N -0.488 5.488 6 C -0.106 4.106 7 C 0.594 3.406 8 O -0.565 6.565 9 N -0.695 5.695 10 C 0.134 3.866 11 H 0.058 0.942 12 C -0.153 4.153 13 C -0.117 4.117 14 C 0.080 3.920 15 H 0.042 0.958 16 C -0.136 4.136 17 N -0.673 5.673 18 C 0.070 3.930 19 C 0.436 3.564 20 O -0.621 6.621 21 N -0.572 5.572 22 C -0.337 4.337 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.994 3.006 27 H -0.271 1.271 28 H -0.268 1.268 29 H -0.272 1.272 30 H 0.091 0.909 31 H 0.107 0.893 32 H 0.097 0.903 33 H 0.306 0.694 34 H 0.415 0.585 35 H 0.079 0.921 36 H 0.041 0.959 37 H 0.077 0.923 38 H 0.109 0.891 39 H 0.095 0.905 40 H 0.042 0.958 41 H 0.057 0.943 42 H 0.083 0.917 43 H 0.339 0.661 44 H 0.103 0.897 45 H 0.047 0.953 46 H 0.395 0.605 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.082 9.016 -20.090 25.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.017 4.017 3 O -0.087 6.087 4 C -0.033 4.033 5 N -0.216 5.216 6 C -0.225 4.225 7 C 0.380 3.620 8 O -0.445 6.445 9 N -0.346 5.346 10 C 0.030 3.970 11 H 0.076 0.924 12 C -0.211 4.211 13 C -0.154 4.154 14 C -0.030 4.030 15 H 0.060 0.940 16 C -0.193 4.193 17 N -0.307 5.307 18 C -0.063 4.063 19 C 0.224 3.776 20 O -0.507 6.507 21 N -0.209 5.209 22 C -0.466 4.466 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.561 5.561 26 Si 0.818 3.182 27 H -0.196 1.196 28 H -0.192 1.192 29 H -0.197 1.197 30 H 0.109 0.891 31 H 0.126 0.874 32 H 0.115 0.885 33 H 0.321 0.679 34 H 0.252 0.748 35 H 0.098 0.902 36 H 0.060 0.940 37 H 0.096 0.904 38 H 0.127 0.873 39 H 0.114 0.886 40 H 0.061 0.939 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.159 0.841 44 H 0.121 0.879 45 H 0.064 0.936 46 H 0.228 0.772 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 12.602 7.429 -19.874 24.677 hybrid contribution -0.920 1.609 0.618 1.954 sum 11.682 9.038 -19.256 24.268 Atomic orbital electron populations 1.20627 0.81932 1.05894 1.04988 1.24027 0.95973 0.83526 0.98212 1.84416 1.19185 1.35663 1.69416 1.29213 0.85752 0.90953 0.97420 1.70682 1.20769 1.11731 1.18451 1.21425 0.90127 0.95189 1.15729 1.17026 0.85389 0.83649 0.75922 1.90804 1.17662 1.83848 1.52147 1.45797 1.10118 1.05388 1.73334 1.21131 0.98230 0.79656 0.97962 0.92396 1.22082 1.02293 1.02022 0.94737 1.22058 0.99322 1.00592 0.93469 1.21700 0.90359 0.97883 0.93016 0.94001 1.21782 0.96469 1.00553 1.00530 1.60301 1.05971 1.56703 1.07732 1.21496 0.95799 0.95197 0.93824 1.20834 0.89223 0.84566 0.82998 1.90478 1.55019 1.35719 1.69474 1.41918 1.22748 1.35102 1.21141 1.19656 1.01244 1.20350 1.05390 0.90346 1.26069 1.02256 0.95543 0.97290 1.69675 1.39199 1.24467 1.22791 0.84975 0.77327 0.78454 0.77494 1.19564 1.19205 1.19726 0.89054 0.87402 0.88466 0.67930 0.74761 0.90203 0.94024 0.90363 0.87284 0.88605 0.93851 0.92346 0.89859 0.84102 0.87927 0.93557 0.77155 0.91220 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.54 9.87 71.24 0.70 -0.84 16 2 C 0.04 0.89 7.44 25.19 0.19 1.08 16 3 O -0.20 -3.54 10.73 0.34 0.00 -3.54 16 4 C 0.20 2.58 13.19 130.52 1.72 4.30 16 5 N -0.49 -9.89 11.06 -305.15 -3.37 -13.27 16 6 C -0.11 -2.68 6.99 40.41 0.28 -2.40 16 7 C 0.59 17.03 7.78 86.66 0.67 17.70 16 8 O -0.57 -19.82 14.47 -4.07 -0.06 -19.88 16 9 N -0.69 -15.88 4.44 -445.80 -1.98 -17.86 16 10 C 0.13 3.04 2.48 44.99 0.11 3.15 16 11 H 0.06 1.78 5.72 -2.39 -0.01 1.76 16 12 C -0.15 -2.92 9.48 71.99 0.68 -2.23 16 13 C -0.12 -2.13 4.35 30.60 0.13 -2.00 16 14 C 0.08 1.90 2.59 44.92 0.12 2.02 16 15 H 0.04 1.02 7.28 -2.39 -0.02 1.01 16 16 C -0.14 -2.83 9.41 71.98 0.68 -2.15 16 17 N -0.67 -22.98 5.93 -495.60 -2.94 -25.92 16 18 C 0.07 2.68 5.97 85.56 0.51 3.19 16 19 C 0.44 22.46 7.82 87.66 0.69 23.14 16 20 O -0.62 -36.61 15.78 -3.05 -0.05 -36.65 16 21 N -0.57 -31.24 5.29 -306.98 -1.62 -32.86 16 22 C -0.34 -20.02 9.68 84.04 0.81 -19.21 16 23 H 0.08 4.95 7.16 -2.91 -0.02 4.92 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 25 N -0.92 -51.21 13.05 21.66 0.28 -50.92 16 26 Si 0.99 44.24 29.55 68.60 2.03 46.26 16 27 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 28 H -0.27 -11.11 7.11 99.48 0.71 -10.40 16 29 H -0.27 -11.98 7.11 99.48 0.71 -11.28 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.11 1.46 8.14 -2.38 -0.02 1.44 16 32 H 0.10 2.25 6.49 -2.39 -0.02 2.24 16 33 H 0.31 0.14 8.06 -2.92 -0.02 0.11 16 34 H 0.42 7.86 8.33 -92.71 -0.77 7.08 16 35 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.04 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.11 1.32 8.14 -2.39 -0.02 1.30 16 39 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.04 1.01 7.45 -2.39 -0.02 0.99 16 41 H 0.06 1.29 8.14 -2.38 -0.02 1.27 16 42 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 43 H 0.34 12.75 6.11 -89.69 -0.55 12.20 16 44 H 0.10 3.58 7.44 -2.39 -0.02 3.56 16 45 H 0.05 1.72 8.05 -2.39 -0.02 1.70 16 46 H 0.39 20.56 7.90 -92.71 -0.73 19.83 16 47 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 Total: -1.00 -79.65 395.75 -0.97 -80.61 By element: Atomic # 1 Polarization: 49.48 SS G_CDS: -1.02 Total: 48.46 kcal Atomic # 6 Polarization: 17.79 SS G_CDS: 7.77 Total: 25.56 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -9.64 Total: -140.83 kcal Atomic # 8 Polarization: -59.97 SS G_CDS: -0.10 Total: -60.07 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Total: -79.65 -0.97 -80.61 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133857206.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.619 kcal (2) G-P(sol) polarization free energy of solvation -79.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.264 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.968 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.614 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds