Wall clock time and date at job start Tue Mar 31 2020 20:39:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 O 1.34254 * 126.52540 * 2 1 4 4 C 1.34051 * 108.22799 * 179.87239 * 3 2 1 5 5 N 1.29939 * 109.24426 * 0.40824 * 4 3 2 6 6 C 1.36066 * 108.47165 * 359.74975 * 5 4 3 7 7 C 1.47422 * 126.44481 * 180.02562 * 6 5 4 8 8 O 1.21614 * 120.00076 * 179.97438 * 7 6 5 9 9 N 1.34770 * 120.00185 * 359.97437 * 7 6 5 10 10 C 1.46507 * 120.00360 * 180.02562 * 9 7 6 11 11 H 1.09003 * 109.46814 * 33.55706 * 10 9 7 12 12 C 1.53000 * 109.46834 * 273.56247 * 10 9 7 13 13 C 1.53000 * 109.47416 * 153.55762 * 10 9 7 14 14 C 1.52998 * 109.47094 * 294.54886 * 13 10 9 15 15 H 1.09002 * 109.47286 * 54.62297 * 14 13 10 16 16 C 1.52995 * 109.47091 * 294.62650 * 14 13 10 17 17 N 1.46901 * 109.46930 * 174.62326 * 14 13 10 18 18 C 1.46903 * 110.99996 * 203.25916 * 17 14 13 19 19 C 1.50691 * 109.47004 * 180.02562 * 18 17 14 20 20 O 1.21284 * 120.00360 * 0.02562 * 19 18 17 21 21 N 1.34779 * 119.99976 * 179.97438 * 19 18 17 22 22 C 1.37101 * 120.00094 * 179.97438 * 21 19 18 23 23 H 1.07990 * 120.00058 * 0.02562 * 22 21 19 24 24 C 1.38957 * 119.99849 * 180.02562 * 22 21 19 25 25 N 1.31410 * 119.99458 * 180.02562 * 24 22 21 26 26 Si 1.86803 * 120.00034 * 359.97438 * 24 22 21 27 27 H 1.48495 * 109.46943 * 90.00314 * 26 24 22 28 28 H 1.48497 * 109.46904 * 210.00567 * 26 24 22 29 29 H 1.48499 * 109.47149 * 330.00115 * 26 24 22 30 30 H 1.09005 * 109.47030 * 269.67970 * 1 2 3 31 31 H 1.08998 * 109.47393 * 29.67767 * 1 2 3 32 32 H 1.08995 * 109.47401 * 149.68178 * 1 2 3 33 33 H 1.08003 * 125.38306 * 180.12886 * 4 3 2 34 34 H 0.96995 * 120.00297 * 359.97438 * 9 7 6 35 35 H 1.09003 * 109.46978 * 299.99358 * 12 10 9 36 36 H 1.08999 * 109.47658 * 59.99779 * 12 10 9 37 37 H 1.09002 * 109.46934 * 179.97438 * 12 10 9 38 38 H 1.09007 * 109.46627 * 54.54947 * 13 10 9 39 39 H 1.08998 * 109.46741 * 174.54897 * 13 10 9 40 40 H 1.09000 * 109.47149 * 179.97438 * 16 14 13 41 41 H 1.08998 * 109.47069 * 299.99580 * 16 14 13 42 42 H 1.08993 * 109.47642 * 60.00189 * 16 14 13 43 43 H 1.00900 * 110.99885 * 327.21086 * 17 14 13 44 44 H 1.08999 * 109.46807 * 300.00692 * 18 17 14 45 45 H 1.08997 * 109.47206 * 60.00064 * 18 17 14 46 46 H 0.97000 * 120.00169 * 0.02562 * 21 19 18 47 47 H 0.97009 * 119.99228 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.3060 1.0789 0.0000 4 6 3.5787 0.6580 0.0028 5 7 3.6002 -0.6412 -0.0041 6 6 2.3170 -1.0936 -0.0061 7 6 1.8853 -2.5032 -0.0130 8 8 0.7003 -2.7762 -0.0137 9 7 2.8040 -3.4892 -0.0186 10 6 2.3751 -4.8901 -0.0260 11 1 1.4497 -4.9837 -0.5943 12 6 2.1405 -5.3592 1.4113 13 6 3.4605 -5.7525 -0.6733 14 6 3.5998 -5.3742 -2.1492 15 1 3.7805 -4.3026 -2.2342 16 6 2.3115 -5.7345 -2.8918 17 7 4.7268 -6.1091 -2.7388 18 6 5.2448 -5.4151 -3.9254 19 6 6.3968 -6.1971 -4.5018 20 8 6.7512 -7.2311 -3.9762 21 7 7.0327 -5.7481 -5.6020 22 6 8.0811 -6.4593 -6.1261 23 1 8.3972 -7.3795 -5.6576 24 6 8.7371 -5.9960 -7.2601 25 7 9.7417 -6.6780 -7.7626 26 14 8.1900 -4.4045 -8.0709 27 1 8.9351 -3.2652 -7.4777 28 1 8.4658 -4.4713 -9.5285 29 1 6.7340 -4.2120 -7.8510 30 1 -0.3633 -0.0057 1.0277 31 1 -0.3634 0.8928 -0.5088 32 1 -0.3634 -0.8871 -0.5187 33 1 4.4489 1.2977 0.0055 34 1 3.7492 -3.2715 -0.0185 35 1 3.0659 -5.2656 1.9796 36 1 1.3672 -4.7448 1.8724 37 1 1.8209 -6.4013 1.4058 38 1 4.4096 -5.5847 -0.1640 39 1 3.1855 -6.8041 -0.5921 40 1 2.4106 -5.4646 -3.9432 41 1 2.1308 -6.8060 -2.8069 42 1 1.4753 -5.1892 -2.4543 43 1 5.4574 -6.2571 -2.0588 44 1 4.4542 -5.3307 -4.6709 45 1 5.5863 -4.4191 -3.6436 46 1 6.7492 -4.9213 -6.0226 47 1 10.1998 -6.3544 -8.5541 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001133857207.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:16 Heat of formation + Delta-G solvation = -83.499685 kcal Electronic energy + Delta-G solvation = -29035.410009 eV Core-core repulsion = 24832.598068 eV Total energy + Delta-G solvation = -4202.811942 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.44190 -40.90628 -40.32656 -38.55745 -36.40752 -35.92866 -35.82589 -33.77004 -33.37532 -32.88059 -31.22568 -28.38518 -28.33936 -27.62215 -25.67067 -25.09305 -23.30958 -22.26602 -21.61463 -21.32139 -21.09545 -20.27846 -19.26971 -17.92972 -17.85520 -17.45595 -17.12435 -16.98432 -16.68222 -16.05506 -15.97381 -15.71881 -15.50428 -15.22255 -15.15576 -14.86998 -14.54244 -14.42613 -14.11468 -13.97175 -13.95850 -13.60848 -13.37803 -13.34049 -13.25302 -12.95580 -12.85346 -12.73233 -12.43098 -12.42886 -12.14826 -11.99523 -11.87220 -11.70481 -11.66070 -11.52434 -11.17026 -10.45146 -10.25992 -10.23138 -9.86242 -9.34915 -8.42179 -6.02942 0.04537 1.04236 1.29464 1.34030 1.43289 1.58677 1.93729 2.11917 2.21873 2.22759 2.67281 3.10849 3.14081 3.32760 3.63401 3.74063 3.81369 3.91903 4.11588 4.15129 4.24667 4.33917 4.37571 4.41377 4.43578 4.49611 4.53379 4.57815 4.75491 4.84781 4.88657 4.92824 4.93275 5.00840 5.10631 5.15965 5.18022 5.29613 5.39023 5.51260 5.52340 5.90755 6.06769 6.28368 6.41879 6.58269 6.58769 6.86812 7.08898 7.38325 7.94409 8.75433 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011777 B = 0.002451 C = 0.002144 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2376.847896 B =11423.156274 C =13056.613530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.042 3.958 3 O -0.201 6.201 4 C 0.192 3.808 5 N -0.494 5.494 6 C -0.109 4.109 7 C 0.601 3.399 8 O -0.559 6.559 9 N -0.700 5.700 10 C 0.146 3.854 11 H 0.088 0.912 12 C -0.157 4.157 13 C -0.120 4.120 14 C 0.087 3.913 15 H 0.046 0.954 16 C -0.140 4.140 17 N -0.678 5.678 18 C 0.063 3.937 19 C 0.450 3.550 20 O -0.612 6.612 21 N -0.592 5.592 22 C -0.328 4.328 23 H 0.056 0.944 24 C -0.015 4.015 25 N -0.933 5.933 26 Si 0.964 3.036 27 H -0.255 1.255 28 H -0.274 1.274 29 H -0.234 1.234 30 H 0.103 0.897 31 H 0.102 0.898 32 H 0.099 0.901 33 H 0.300 0.700 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.048 0.952 37 H 0.081 0.919 38 H 0.078 0.922 39 H 0.095 0.905 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.065 0.935 43 H 0.346 0.654 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.389 0.611 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.391 20.225 18.238 34.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.015 4.015 3 O -0.088 6.088 4 C -0.036 4.036 5 N -0.223 5.223 6 C -0.228 4.228 7 C 0.387 3.613 8 O -0.439 6.439 9 N -0.351 5.351 10 C 0.042 3.958 11 H 0.106 0.894 12 C -0.216 4.216 13 C -0.158 4.158 14 C -0.022 4.022 15 H 0.063 0.937 16 C -0.198 4.198 17 N -0.311 5.311 18 C -0.070 4.070 19 C 0.238 3.762 20 O -0.496 6.496 21 N -0.233 5.233 22 C -0.458 4.458 23 H 0.074 0.926 24 C -0.213 4.213 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.180 1.180 28 H -0.199 1.199 29 H -0.158 1.158 30 H 0.121 0.879 31 H 0.120 0.880 32 H 0.117 0.883 33 H 0.314 0.686 34 H 0.247 0.753 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.096 0.904 39 H 0.114 0.886 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.084 0.916 43 H 0.166 0.834 44 H 0.123 0.877 45 H 0.091 0.909 46 H 0.224 0.776 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -20.684 18.467 18.071 33.097 hybrid contribution 0.990 1.587 -0.454 1.925 sum -19.694 20.054 17.617 33.172 Atomic orbital electron populations 1.20663 0.81263 1.05817 1.05473 1.24149 0.96167 0.83262 0.97912 1.84422 1.19068 1.35907 1.69360 1.29090 0.85797 0.90936 0.97794 1.70720 1.21431 1.11776 1.18326 1.21515 0.89803 0.95574 1.15889 1.16869 0.85349 0.83230 0.75815 1.90760 1.17016 1.83737 1.52352 1.45911 1.10160 1.05771 1.73233 1.21080 0.98367 0.78903 0.97434 0.89412 1.22124 1.02079 1.02247 0.95123 1.21995 0.99250 1.01167 0.93367 1.21550 0.91242 0.95467 0.93914 0.93654 1.21839 0.96017 1.02081 0.99845 1.60126 1.12278 1.49841 1.08883 1.21637 0.94971 0.95115 0.95260 1.20914 0.85988 0.87269 0.82029 1.90537 1.69007 1.27332 1.62723 1.42049 1.30718 1.23926 1.26633 1.19012 1.09022 1.06962 1.10761 0.92561 1.26106 0.95611 1.02872 0.96743 1.69806 1.22660 1.41253 1.23672 0.85378 0.80472 0.77439 0.78332 1.17978 1.19930 1.15778 0.87888 0.87979 0.88275 0.68563 0.75318 0.91780 0.93239 0.90002 0.90379 0.88629 0.93409 0.92194 0.91631 0.83400 0.87650 0.90917 0.77575 0.91116 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.87 9.88 71.23 0.70 -0.16 16 2 C 0.04 0.69 7.44 25.18 0.19 0.87 16 3 O -0.20 -2.68 10.73 0.40 0.00 -2.68 16 4 C 0.19 2.06 13.19 130.52 1.72 3.78 16 5 N -0.49 -8.71 11.06 -305.14 -3.37 -12.09 16 6 C -0.11 -2.16 6.99 40.41 0.28 -1.88 16 7 C 0.60 13.02 7.79 86.66 0.68 13.69 16 8 O -0.56 -14.02 14.44 -4.07 -0.06 -14.08 16 9 N -0.70 -12.83 4.45 -445.79 -1.98 -14.81 16 10 C 0.15 2.49 2.47 44.99 0.11 2.60 16 11 H 0.09 1.70 5.73 -2.39 -0.01 1.69 16 12 C -0.16 -2.37 9.50 71.98 0.68 -1.69 16 13 C -0.12 -2.07 4.28 30.59 0.13 -1.94 16 14 C 0.09 1.90 2.63 44.91 0.12 2.02 16 15 H 0.05 0.98 7.31 -2.39 -0.02 0.96 16 16 C -0.14 -3.03 9.16 71.98 0.66 -2.37 16 17 N -0.68 -19.93 5.93 -495.60 -2.94 -22.86 16 18 C 0.06 1.99 5.97 85.55 0.51 2.50 16 19 C 0.45 20.65 7.82 87.65 0.69 21.34 16 20 O -0.61 -34.19 15.78 -3.04 -0.05 -34.24 16 21 N -0.59 -28.36 5.09 -307.00 -1.56 -29.92 16 22 C -0.33 -19.43 10.16 84.04 0.85 -18.57 16 23 H 0.06 3.95 7.39 -2.92 -0.02 3.93 16 24 C -0.01 -0.82 5.50 84.93 0.47 -0.35 16 25 N -0.93 -56.55 13.96 21.67 0.30 -56.25 16 26 Si 0.96 39.12 27.74 68.60 1.90 41.02 16 27 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 28 H -0.27 -11.03 7.11 99.48 0.71 -10.33 16 29 H -0.23 -8.12 6.52 99.48 0.65 -7.47 16 30 H 0.10 0.94 8.14 -2.38 -0.02 0.92 16 31 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.10 1.46 6.48 -2.39 -0.02 1.44 16 33 H 0.30 -0.16 8.06 -2.91 -0.02 -0.18 16 34 H 0.41 7.10 8.34 -92.71 -0.77 6.33 16 35 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 38 H 0.08 1.26 8.02 -2.38 -0.02 1.24 16 39 H 0.10 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.05 1.08 7.35 -2.39 -0.02 1.07 16 41 H 0.06 1.35 8.14 -2.39 -0.02 1.34 16 42 H 0.06 1.28 6.47 -2.39 -0.02 1.27 16 43 H 0.35 10.59 8.00 -89.69 -0.72 9.87 16 44 H 0.11 3.00 7.32 -2.39 -0.02 2.98 16 45 H 0.07 1.93 8.06 -2.39 -0.02 1.91 16 46 H 0.39 15.53 5.76 -92.71 -0.53 14.99 16 47 H 0.28 15.44 8.31 -92.70 -0.77 14.67 16 Total: -1.00 -82.42 392.27 -1.01 -83.44 By element: Atomic # 1 Polarization: 43.69 SS G_CDS: -1.05 Total: 42.64 kcal Atomic # 6 Polarization: 12.04 SS G_CDS: 7.79 Total: 19.84 kcal Atomic # 7 Polarization: -126.37 SS G_CDS: -9.55 Total: -135.92 kcal Atomic # 8 Polarization: -50.90 SS G_CDS: -0.10 Total: -51.01 kcal Atomic # 14 Polarization: 39.12 SS G_CDS: 1.90 Total: 41.02 kcal Total: -82.42 -1.01 -83.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001133857207.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.064 kcal (2) G-P(sol) polarization free energy of solvation -82.424 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.488 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.436 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds