Wall clock time and date at job start Tue Mar 31 2020 21:28:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33691 * 126.27399 * 2 1 4 4 C 1.30613 * 108.99940 * 179.97438 * 3 2 1 5 5 O 1.33665 * 109.15211 * 359.97438 * 4 3 2 6 6 C 1.35350 * 107.68484 * 359.75693 * 5 4 3 7 7 C 1.46718 * 126.64651 * 180.26611 * 6 5 4 8 8 O 1.21688 * 120.00234 * 180.14505 * 7 6 5 9 9 N 1.34779 * 120.00103 * 0.13967 * 7 6 5 10 10 C 1.46496 * 120.00263 * 180.02562 * 9 7 6 11 11 H 1.09004 * 109.47190 * 324.99771 * 10 9 7 12 12 C 1.53002 * 109.47443 * 84.99920 * 10 9 7 13 13 C 1.53001 * 109.47351 * 205.00208 * 10 9 7 14 14 C 1.52998 * 109.47089 * 64.99713 * 13 10 9 15 15 H 1.09004 * 109.47160 * 305.00059 * 14 13 10 16 16 C 1.53004 * 109.47055 * 185.00502 * 14 13 10 17 17 N 1.46894 * 109.47375 * 65.00400 * 14 13 10 18 18 C 1.46902 * 111.00225 * 205.00251 * 17 14 13 19 19 C 1.50701 * 109.47029 * 179.97438 * 18 17 14 20 20 O 1.21288 * 120.00086 * 359.97438 * 19 18 17 21 21 N 1.34782 * 119.99810 * 179.97438 * 19 18 17 22 22 C 1.37097 * 119.99970 * 179.97438 * 21 19 18 23 23 H 1.08005 * 119.99652 * 0.02562 * 22 21 19 24 24 C 1.38943 * 119.99788 * 180.02562 * 22 21 19 25 25 N 1.31418 * 119.99586 * 179.97438 * 24 22 21 26 26 Si 1.86797 * 120.00219 * 0.02562 * 24 22 21 27 27 H 1.48498 * 109.47145 * 90.00058 * 26 24 22 28 28 H 1.48509 * 109.47048 * 209.99879 * 26 24 22 29 29 H 1.48502 * 109.47266 * 329.99823 * 26 24 22 30 30 H 1.09001 * 109.46953 * 90.02730 * 1 2 3 31 31 H 1.09000 * 109.47318 * 210.02328 * 1 2 3 32 32 H 1.09000 * 109.47161 * 330.02958 * 1 2 3 33 33 H 1.07996 * 125.42401 * 180.02562 * 4 3 2 34 34 H 0.97000 * 119.99862 * 0.02562 * 9 7 6 35 35 H 1.08998 * 109.46632 * 59.99906 * 12 10 9 36 36 H 1.08998 * 109.47429 * 180.02562 * 12 10 9 37 37 H 1.09001 * 109.46785 * 300.00362 * 12 10 9 38 38 H 1.08995 * 109.47408 * 184.99942 * 13 10 9 39 39 H 1.09004 * 109.46449 * 305.00019 * 13 10 9 40 40 H 1.08993 * 109.47449 * 59.99964 * 16 14 13 41 41 H 1.09002 * 109.46911 * 180.02562 * 16 14 13 42 42 H 1.08994 * 109.46673 * 299.99780 * 16 14 13 43 43 H 1.00905 * 111.00141 * 328.95220 * 17 14 13 44 44 H 1.09002 * 109.46664 * 299.99637 * 18 17 14 45 45 H 1.09002 * 109.47495 * 59.99581 * 18 17 14 46 46 H 0.97005 * 119.99739 * 0.02562 * 21 19 18 47 47 H 0.97006 * 119.99651 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5453 0.6900 0.0006 5 8 3.5891 -0.6460 0.0015 6 6 2.3137 -1.0992 0.0070 7 6 1.8827 -2.5016 0.0153 8 8 0.6966 -2.7736 0.0170 9 7 2.8004 -3.4886 0.0211 10 6 2.3701 -4.8890 0.0289 11 1 1.4586 -4.9857 0.6187 12 6 2.1004 -5.3477 -1.4056 13 6 3.4698 -5.7571 0.6436 14 6 3.6529 -5.3817 2.1155 15 1 3.8473 -4.3122 2.1962 16 6 4.8347 -6.1601 2.6972 17 7 2.4321 -5.7151 2.8614 18 6 2.3067 -4.8825 4.0652 19 6 1.0453 -5.2520 4.8023 20 8 0.3217 -6.1229 4.3674 21 7 0.7212 -4.6147 5.9449 22 6 -0.4266 -4.9505 6.6152 23 1 -1.0709 -5.7260 6.2279 24 6 -0.7610 -4.2931 7.7928 25 7 -1.8615 -4.6146 8.4350 26 14 0.3531 -2.9514 8.4621 27 1 -0.0618 -1.6393 7.9040 28 1 0.2488 -2.9145 9.9431 29 1 1.7578 -3.2336 8.0717 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3634 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.4043 1.3444 0.0011 34 1 3.7459 -3.2718 0.0200 35 1 3.0119 -5.2509 -1.9954 36 1 1.7798 -6.3894 -1.3998 37 1 1.3169 -4.7292 -1.8436 38 1 3.1881 -6.8073 0.5689 39 1 4.4046 -5.5926 0.1077 40 1 5.7405 -5.9127 2.1438 41 1 4.9648 -5.8930 3.7459 42 1 4.6402 -7.2296 2.6165 43 1 1.6153 -5.6287 2.2754 44 1 3.1679 -5.0478 4.7126 45 1 2.2646 -3.8319 3.7776 46 1 1.2997 -3.9179 6.2924 47 1 -2.0947 -4.1559 9.2573 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134019353.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:30 Heat of formation + Delta-G solvation = -81.229140 kcal Electronic energy + Delta-G solvation = -29896.898055 eV Core-core repulsion = 25694.184572 eV Total energy + Delta-G solvation = -4202.713483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.50324 -41.04800 -40.34334 -38.64794 -36.64221 -36.16734 -35.82065 -33.79680 -33.19978 -32.48282 -31.51021 -28.85327 -28.32455 -27.62696 -25.54812 -25.09157 -23.32764 -22.28338 -21.80802 -21.34238 -21.16139 -20.33474 -19.40224 -18.00012 -17.88865 -17.62403 -17.31212 -17.08249 -16.71869 -16.21122 -15.96400 -15.69550 -15.63768 -15.35145 -15.12105 -14.72691 -14.55579 -14.33910 -14.14745 -14.08523 -13.98721 -13.52862 -13.38816 -13.33348 -13.18842 -12.97178 -12.84479 -12.69262 -12.45178 -12.26209 -12.18812 -12.02183 -12.00387 -11.91275 -11.55535 -11.51429 -11.28941 -10.48842 -10.40657 -10.28067 -9.96837 -9.34671 -8.44051 -6.04984 -0.28826 1.26060 1.31884 1.34685 1.36883 1.40680 1.90861 1.91216 2.09540 2.19749 2.70171 3.10916 3.11780 3.36775 3.57443 3.61658 3.73222 3.84748 4.07980 4.11834 4.32146 4.33481 4.35373 4.41080 4.46713 4.49362 4.59547 4.61567 4.70436 4.75663 4.79734 4.92381 4.97784 5.00851 5.04069 5.20475 5.23645 5.26550 5.37057 5.48472 5.50992 5.88810 6.07161 6.22029 6.36729 6.52123 6.56386 6.84477 6.93538 7.35504 7.91853 8.73741 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008703 B = 0.003521 C = 0.002880 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3216.541996 B = 7950.914619 C = 9718.967896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.069 3.931 3 N -0.528 5.528 4 C 0.232 3.768 5 O -0.187 6.187 6 C -0.135 4.135 7 C 0.603 3.397 8 O -0.546 6.546 9 N -0.696 5.696 10 C 0.135 3.865 11 H 0.060 0.940 12 C -0.156 4.156 13 C -0.118 4.118 14 C 0.079 3.921 15 H 0.050 0.950 16 C -0.137 4.137 17 N -0.679 5.679 18 C 0.065 3.935 19 C 0.447 3.553 20 O -0.612 6.612 21 N -0.591 5.591 22 C -0.330 4.330 23 H 0.055 0.945 24 C -0.013 4.013 25 N -0.933 5.933 26 Si 0.963 3.037 27 H -0.259 1.259 28 H -0.271 1.271 29 H -0.232 1.232 30 H 0.090 0.910 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.312 0.688 34 H 0.417 0.583 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.040 0.960 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.046 0.954 42 H 0.054 0.946 43 H 0.339 0.661 44 H 0.113 0.887 45 H 0.060 0.940 46 H 0.388 0.612 47 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.633 10.625 -20.892 32.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.054 4.054 3 N -0.257 5.257 4 C 0.007 3.993 5 O -0.073 6.073 6 C -0.191 4.191 7 C 0.389 3.611 8 O -0.426 6.426 9 N -0.348 5.348 10 C 0.031 3.969 11 H 0.078 0.922 12 C -0.214 4.214 13 C -0.155 4.155 14 C -0.030 4.030 15 H 0.068 0.932 16 C -0.195 4.195 17 N -0.314 5.314 18 C -0.067 4.067 19 C 0.235 3.765 20 O -0.496 6.496 21 N -0.233 5.233 22 C -0.459 4.459 23 H 0.073 0.927 24 C -0.212 4.212 25 N -0.573 5.573 26 Si 0.782 3.218 27 H -0.184 1.184 28 H -0.195 1.195 29 H -0.155 1.155 30 H 0.109 0.891 31 H 0.095 0.905 32 H 0.103 0.897 33 H 0.326 0.674 34 H 0.254 0.746 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.060 0.940 38 H 0.112 0.888 39 H 0.131 0.869 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.160 0.840 44 H 0.131 0.869 45 H 0.078 0.922 46 H 0.224 0.776 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.330 9.879 -20.685 31.312 hybrid contribution -0.069 0.927 0.555 1.083 sum 21.261 10.807 -20.131 31.210 Atomic orbital electron populations 1.20383 0.85615 1.04018 1.04052 1.22267 0.98838 0.87142 0.97184 1.70383 1.02763 1.31445 1.21111 1.29631 0.98090 0.79035 0.92516 1.84479 1.28114 1.25287 1.69425 1.22645 0.82378 0.95747 1.18295 1.16500 0.85680 0.82173 0.76707 1.90904 1.17392 1.82446 1.51829 1.45866 1.09935 1.05569 1.73416 1.21158 0.98467 0.79312 0.97994 0.92214 1.22099 1.02465 1.02016 0.94800 1.22075 0.99378 1.00510 0.93585 1.21728 0.90101 0.98277 0.92855 0.93186 1.21794 0.96519 1.00460 1.00696 1.60276 1.06092 1.56861 1.08122 1.21615 0.95242 0.95865 0.94018 1.20986 0.89219 0.83930 0.82409 1.90537 1.55090 1.35160 1.68810 1.42038 1.22300 1.36027 1.22889 1.19018 1.00112 1.20620 1.06189 0.92671 1.26093 0.98387 1.00847 0.95848 1.69806 1.25706 1.43544 1.18254 0.85399 0.79570 0.78072 0.78715 1.18380 1.19536 1.15546 0.89134 0.90480 0.89674 0.67363 0.74564 0.90061 0.90373 0.94050 0.88832 0.86896 0.89738 0.93525 0.92725 0.84032 0.86884 0.92210 0.77645 0.91071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.95 9.88 71.24 0.70 -1.25 16 2 C 0.07 1.62 7.16 41.83 0.30 1.92 16 3 N -0.53 -10.50 11.26 -303.13 -3.41 -13.92 16 4 C 0.23 2.55 13.21 130.42 1.72 4.27 16 5 O -0.19 -2.75 10.57 -7.17 -0.08 -2.82 16 6 C -0.14 -2.96 7.18 24.04 0.17 -2.79 16 7 C 0.60 14.79 7.75 86.46 0.67 15.46 16 8 O -0.55 -17.74 14.45 -4.31 -0.06 -17.80 16 9 N -0.70 -12.09 4.44 -446.46 -1.98 -14.07 16 10 C 0.13 2.50 2.48 44.99 0.11 2.61 16 11 H 0.06 1.61 5.72 -2.38 -0.01 1.60 16 12 C -0.16 -2.49 9.48 71.98 0.68 -1.81 16 13 C -0.12 -1.65 4.34 30.59 0.13 -1.52 16 14 C 0.08 1.50 2.59 44.92 0.12 1.62 16 15 H 0.05 0.88 7.28 -2.38 -0.02 0.86 16 16 C -0.14 -2.25 9.42 71.98 0.68 -1.58 16 17 N -0.68 -20.37 5.93 -495.57 -2.94 -23.31 16 18 C 0.07 2.15 5.97 85.56 0.51 2.66 16 19 C 0.45 21.40 7.82 87.66 0.69 22.08 16 20 O -0.61 -35.56 15.78 -3.06 -0.05 -35.61 16 21 N -0.59 -29.36 5.09 -306.98 -1.56 -30.92 16 22 C -0.33 -20.09 10.16 84.04 0.85 -19.24 16 23 H 0.06 3.98 7.39 -2.91 -0.02 3.96 16 24 C -0.01 -0.74 5.50 84.92 0.47 -0.27 16 25 N -0.93 -57.53 13.96 21.66 0.30 -57.23 16 26 Si 0.96 40.09 27.74 68.60 1.90 41.99 16 27 H -0.26 -10.33 7.11 99.48 0.71 -9.63 16 28 H -0.27 -11.02 7.11 99.48 0.71 -10.32 16 29 H -0.23 -8.19 6.52 99.48 0.65 -7.54 16 30 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.08 2.13 6.45 -2.39 -0.02 2.12 16 32 H 0.08 1.79 8.14 -2.39 -0.02 1.78 16 33 H 0.31 -0.75 8.06 -2.91 -0.02 -0.78 16 34 H 0.42 4.73 8.40 -92.71 -0.78 3.95 16 35 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 37 H 0.04 0.84 8.14 -2.39 -0.02 0.83 16 38 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.11 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.08 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.05 0.86 7.45 -2.39 -0.02 0.84 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.34 11.53 6.11 -89.69 -0.55 10.98 16 44 H 0.11 3.16 7.44 -2.39 -0.02 3.14 16 45 H 0.06 1.77 8.06 -2.39 -0.02 1.75 16 46 H 0.39 16.12 5.76 -92.70 -0.53 15.58 16 47 H 0.28 15.72 8.31 -92.70 -0.77 14.95 16 Total: -1.00 -88.54 392.59 -0.96 -89.50 By element: Atomic # 1 Polarization: 42.91 SS G_CDS: -0.89 Total: 42.02 kcal Atomic # 6 Polarization: 14.36 SS G_CDS: 7.81 Total: 22.17 kcal Atomic # 7 Polarization: -129.86 SS G_CDS: -9.60 Total: -139.45 kcal Atomic # 8 Polarization: -56.04 SS G_CDS: -0.19 Total: -56.23 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 1.90 Total: 41.99 kcal Total: -88.54 -0.96 -89.50 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134019353.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.274 kcal (2) G-P(sol) polarization free energy of solvation -88.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.963 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds