Wall clock time and date at job start Tue Mar 31 2020 21:28:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33696 * 126.27362 * 2 1 4 4 C 1.30612 * 108.99456 * 179.97438 * 3 2 1 5 5 O 1.33664 * 109.15432 * 0.02562 * 4 3 2 6 6 C 1.35344 * 107.68644 * 359.75444 * 5 4 3 7 7 C 1.46721 * 126.64225 * 180.26186 * 6 5 4 8 8 O 1.21691 * 119.99668 * 180.14241 * 7 6 5 9 9 N 1.34775 * 120.00444 * 0.14822 * 7 6 5 10 10 C 1.46499 * 120.00152 * 179.97438 * 9 7 6 11 11 H 1.09002 * 109.46975 * 33.56052 * 10 9 7 12 12 C 1.52994 * 109.46834 * 273.55974 * 10 9 7 13 13 C 1.52997 * 109.46945 * 153.55674 * 10 9 7 14 14 C 1.52999 * 109.47579 * 294.54725 * 13 10 9 15 15 H 1.09001 * 109.47007 * 54.62083 * 14 13 10 16 16 C 1.53002 * 109.46894 * 294.62889 * 14 13 10 17 17 N 1.46893 * 109.47431 * 174.62595 * 14 13 10 18 18 C 1.46895 * 111.00192 * 203.26065 * 17 14 13 19 19 C 1.50698 * 109.47539 * 179.97438 * 18 17 14 20 20 O 1.21290 * 119.99907 * 359.97438 * 19 18 17 21 21 N 1.34779 * 120.00391 * 179.97438 * 19 18 17 22 22 C 1.37094 * 120.00108 * 179.97438 * 21 19 18 23 23 H 1.08001 * 120.00355 * 0.02562 * 22 21 19 24 24 C 1.38949 * 120.00233 * 180.02562 * 22 21 19 25 25 N 1.31413 * 119.99720 * 359.97438 * 24 22 21 26 26 Si 1.86801 * 120.00216 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.47206 * 359.97438 * 26 24 22 28 28 H 1.48500 * 109.46990 * 119.99796 * 26 24 22 29 29 H 1.48497 * 109.47044 * 239.99691 * 26 24 22 30 30 H 1.09005 * 109.47008 * 90.02269 * 1 2 3 31 31 H 1.09000 * 109.47424 * 210.02070 * 1 2 3 32 32 H 1.08997 * 109.47057 * 330.02626 * 1 2 3 33 33 H 1.08007 * 125.42097 * 180.02562 * 4 3 2 34 34 H 0.96998 * 119.99514 * 359.97438 * 9 7 6 35 35 H 1.09002 * 109.47403 * 299.99816 * 12 10 9 36 36 H 1.08995 * 109.47543 * 59.99961 * 12 10 9 37 37 H 1.09004 * 109.46772 * 180.02562 * 12 10 9 38 38 H 1.09000 * 109.47342 * 54.55115 * 13 10 9 39 39 H 1.09001 * 109.46793 * 174.54664 * 13 10 9 40 40 H 1.09000 * 109.47453 * 60.00024 * 16 14 13 41 41 H 1.09007 * 109.46542 * 179.97438 * 16 14 13 42 42 H 1.08997 * 109.47345 * 299.99385 * 16 14 13 43 43 H 1.00906 * 110.99902 * 327.21338 * 17 14 13 44 44 H 1.09000 * 109.47061 * 300.00372 * 18 17 14 45 45 H 1.09005 * 109.47198 * 59.99793 * 18 17 14 46 46 H 0.96994 * 119.99783 * 0.02562 * 21 19 18 47 47 H 0.96998 * 120.00086 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0779 0.0000 4 6 3.5452 0.6899 0.0006 5 8 3.5889 -0.6460 0.0004 6 6 2.3136 -1.0992 0.0052 7 6 1.8827 -2.5017 0.0122 8 8 0.6966 -2.7737 0.0134 9 7 2.8004 -3.4887 0.0173 10 6 2.3701 -4.8890 0.0249 11 1 1.4447 -4.9878 -0.5426 12 6 2.1348 -5.3424 1.4670 13 6 3.4548 -5.7593 -0.6130 14 6 3.5947 -5.3970 -2.0929 15 1 3.7764 -4.3266 -2.1893 16 6 2.3062 -5.7641 -2.8317 17 7 4.7210 -6.1393 -2.6743 18 6 5.2399 -5.4586 -3.8682 19 6 6.3921 -6.2472 -4.4353 20 8 6.7464 -7.2751 -3.8976 21 7 7.0287 -5.8105 -5.5400 22 6 8.0772 -6.5277 -6.0556 23 1 8.3928 -7.4429 -5.5768 24 6 8.7340 -6.0772 -7.1942 25 7 8.3497 -4.9639 -7.7771 26 14 10.1621 -7.0548 -7.8971 27 1 10.3949 -8.2608 -7.0625 28 1 9.8423 -7.4684 -9.2871 29 1 11.3848 -6.2121 -7.9004 30 1 -0.3633 -0.0004 -1.0277 31 1 -0.3634 -0.8898 0.5141 32 1 -0.3633 0.8902 0.5134 33 1 4.4043 1.3444 0.0011 34 1 3.7458 -3.2718 0.0161 35 1 3.0602 -5.2436 2.0345 36 1 1.3621 -4.7224 1.9214 37 1 1.8151 -6.3845 1.4727 38 1 4.4039 -5.5871 -0.1054 39 1 3.1787 -6.8097 -0.5205 40 1 1.4704 -5.2132 -2.4003 41 1 2.4057 -5.5055 -3.8860 42 1 2.1243 -6.8344 -2.7354 43 1 5.4514 -6.2807 -1.9926 44 1 4.4495 -5.3814 -4.6147 45 1 5.5823 -4.4599 -3.5970 46 1 6.7456 -4.9884 -5.9698 47 1 8.8079 -4.6495 -8.5722 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134019354.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:34 Heat of formation + Delta-G solvation = -86.320974 kcal Electronic energy + Delta-G solvation = -29000.625523 eV Core-core repulsion = 24797.691241 eV Total energy + Delta-G solvation = -4202.934282 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -44.48915 -40.97157 -40.19615 -38.57572 -36.66988 -36.18103 -35.79565 -33.38332 -33.16615 -32.44317 -31.19587 -28.80705 -28.28067 -27.59522 -25.82733 -25.05926 -23.31576 -22.29152 -21.75559 -21.22732 -21.02651 -19.92975 -19.35375 -17.98677 -17.88414 -17.57799 -17.28541 -16.98915 -16.54383 -16.17812 -15.91162 -15.69124 -15.49414 -15.39575 -15.37411 -14.79655 -14.39763 -14.28824 -14.07244 -13.93173 -13.62622 -13.50957 -13.33642 -13.30857 -13.18024 -12.92008 -12.85438 -12.72686 -12.41438 -12.18917 -12.16432 -12.11165 -11.99641 -11.72719 -11.67525 -11.52057 -11.24348 -10.40115 -10.32517 -10.02682 -9.93304 -9.34117 -8.47698 -5.96515 -0.26520 1.36153 1.37469 1.40540 1.41680 1.55901 1.94342 2.03594 2.12371 2.28300 2.85374 3.12748 3.19553 3.45805 3.64985 3.67218 3.78747 3.91136 4.10164 4.29062 4.33939 4.38825 4.38876 4.42939 4.44728 4.48990 4.57660 4.66098 4.72207 4.81414 4.85081 4.92371 4.93002 4.97435 5.02375 5.17196 5.26147 5.30503 5.35628 5.40485 5.46361 5.90396 6.11560 6.22796 6.45093 6.53085 6.58693 6.92437 7.11595 7.54851 8.09767 8.70000 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013229 B = 0.002235 C = 0.002008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2116.003366 B =12524.776636 C =13938.199913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 N -0.526 5.526 4 C 0.227 3.773 5 O -0.193 6.193 6 C -0.139 4.139 7 C 0.610 3.390 8 O -0.540 6.540 9 N -0.702 5.702 10 C 0.146 3.854 11 H 0.089 0.911 12 C -0.158 4.158 13 C -0.119 4.119 14 C 0.086 3.914 15 H 0.044 0.956 16 C -0.141 4.141 17 N -0.675 5.675 18 C 0.066 3.934 19 C 0.439 3.561 20 O -0.621 6.621 21 N -0.574 5.574 22 C -0.332 4.332 23 H 0.079 0.921 24 C -0.014 4.014 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.273 1.273 28 H -0.272 1.272 29 H -0.270 1.270 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.305 0.695 34 H 0.411 0.589 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.082 0.918 38 H 0.082 0.918 39 H 0.097 0.903 40 H 0.066 0.934 41 H 0.042 0.958 42 H 0.060 0.940 43 H 0.347 0.653 44 H 0.096 0.904 45 H 0.064 0.936 46 H 0.396 0.604 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.855 11.303 18.253 25.024 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 N -0.255 5.255 4 C 0.002 3.998 5 O -0.080 6.080 6 C -0.194 4.194 7 C 0.396 3.604 8 O -0.419 6.419 9 N -0.353 5.353 10 C 0.042 3.958 11 H 0.107 0.893 12 C -0.216 4.216 13 C -0.157 4.157 14 C -0.023 4.023 15 H 0.062 0.938 16 C -0.199 4.199 17 N -0.308 5.308 18 C -0.066 4.066 19 C 0.226 3.774 20 O -0.507 6.507 21 N -0.211 5.211 22 C -0.462 4.462 23 H 0.097 0.903 24 C -0.214 4.214 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.197 1.197 28 H -0.197 1.197 29 H -0.195 1.195 30 H 0.104 0.896 31 H 0.106 0.894 32 H 0.106 0.894 33 H 0.320 0.680 34 H 0.248 0.752 35 H 0.086 0.914 36 H 0.068 0.932 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.115 0.885 40 H 0.085 0.915 41 H 0.062 0.938 42 H 0.079 0.921 43 H 0.166 0.834 44 H 0.114 0.886 45 H 0.082 0.918 46 H 0.229 0.771 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.919 10.638 18.083 25.177 hybrid contribution 1.844 0.393 -0.542 1.962 sum -12.075 11.032 17.540 23.982 Atomic orbital electron populations 1.20405 0.84776 1.04468 1.04051 1.22400 0.99196 0.86770 0.97046 1.70398 1.02543 1.31584 1.21018 1.29538 0.98216 0.79052 0.92964 1.84506 1.28795 1.25361 1.69290 1.22815 0.82153 0.96175 1.18252 1.16356 0.85667 0.81775 0.76584 1.90844 1.16656 1.82342 1.52094 1.45998 1.09946 1.06077 1.73267 1.21125 0.98507 0.78460 0.97698 0.89316 1.22131 1.02295 1.02418 0.94794 1.21999 0.99345 1.01248 0.93089 1.21570 0.91246 0.95372 0.94146 0.93795 1.21851 0.96166 1.02134 0.99736 1.60109 1.12251 1.50100 1.08365 1.21538 0.95112 0.94987 0.94985 1.20841 0.86381 0.87524 0.82615 1.90488 1.69631 1.27827 1.62804 1.41953 1.29909 1.24390 1.24877 1.19703 1.09537 1.07130 1.09801 0.90253 1.26055 1.01433 0.97463 0.96405 1.69680 1.42872 1.22152 1.21523 0.84866 0.77434 0.78022 0.77993 1.19720 1.19705 1.19506 0.89596 0.89369 0.89425 0.68032 0.75242 0.91446 0.93154 0.89923 0.89987 0.88457 0.91513 0.93840 0.92088 0.83351 0.88621 0.91823 0.77071 0.91303 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.39 9.88 71.24 0.70 -0.69 16 2 C 0.07 1.41 7.16 41.83 0.30 1.71 16 3 N -0.53 -9.77 11.26 -303.13 -3.41 -13.18 16 4 C 0.23 2.68 13.21 130.42 1.72 4.40 16 5 O -0.19 -3.04 10.57 -7.09 -0.07 -3.12 16 6 C -0.14 -2.75 7.18 24.04 0.17 -2.58 16 7 C 0.61 12.61 7.77 86.46 0.67 13.29 16 8 O -0.54 -13.54 14.42 -4.32 -0.06 -13.61 16 9 N -0.70 -11.35 4.44 -446.47 -1.98 -13.33 16 10 C 0.15 2.27 2.47 44.99 0.11 2.38 16 11 H 0.09 1.63 5.73 -2.39 -0.01 1.62 16 12 C -0.16 -2.12 9.50 71.98 0.68 -1.44 16 13 C -0.12 -1.90 4.28 30.59 0.13 -1.77 16 14 C 0.09 1.86 2.63 44.92 0.12 1.98 16 15 H 0.04 0.94 7.31 -2.39 -0.02 0.92 16 16 C -0.14 -3.14 9.16 71.98 0.66 -2.48 16 17 N -0.67 -20.09 5.93 -495.60 -2.94 -23.03 16 18 C 0.07 2.25 5.97 85.56 0.51 2.76 16 19 C 0.44 20.73 7.82 87.66 0.69 21.42 16 20 O -0.62 -34.05 15.78 -3.06 -0.05 -34.10 16 21 N -0.57 -29.42 5.29 -306.99 -1.62 -31.04 16 22 C -0.33 -18.82 9.68 84.04 0.81 -18.01 16 23 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 24 C -0.01 -0.74 5.50 84.93 0.47 -0.28 16 25 N -0.92 -49.62 13.05 21.66 0.28 -49.34 16 26 Si 0.99 42.72 29.55 68.60 2.03 44.75 16 27 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 28 H -0.27 -11.23 7.11 99.48 0.71 -10.53 16 29 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 30 H 0.09 1.41 8.14 -2.38 -0.02 1.39 16 31 H 0.09 1.66 6.45 -2.39 -0.02 1.64 16 32 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 33 H 0.30 -0.07 8.06 -2.91 -0.02 -0.09 16 34 H 0.41 5.54 8.41 -92.71 -0.78 4.76 16 35 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 36 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.93 8.14 -2.38 -0.02 0.91 16 38 H 0.08 1.16 8.02 -2.39 -0.02 1.14 16 39 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.07 1.33 6.47 -2.39 -0.02 1.31 16 41 H 0.04 1.06 7.35 -2.38 -0.02 1.04 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.35 10.50 8.00 -89.69 -0.72 9.78 16 44 H 0.10 3.08 7.32 -2.39 -0.02 3.07 16 45 H 0.06 1.90 8.06 -2.38 -0.02 1.88 16 46 H 0.40 19.32 7.90 -92.71 -0.73 18.58 16 47 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 Total: -1.00 -74.40 395.35 -1.28 -75.67 By element: Atomic # 1 Polarization: 40.83 SS G_CDS: -1.19 Total: 39.64 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 7.75 Total: 20.69 kcal Atomic # 7 Polarization: -120.25 SS G_CDS: -9.67 Total: -129.92 kcal Atomic # 8 Polarization: -50.64 SS G_CDS: -0.19 Total: -50.82 kcal Atomic # 14 Polarization: 42.72 SS G_CDS: 2.03 Total: 44.75 kcal Total: -74.40 -1.28 -75.67 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134019354.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.646 kcal (2) G-P(sol) polarization free energy of solvation -74.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.277 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.675 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds