Wall clock time and date at job start Tue Mar 31 2020 21:28:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33688 * 126.27371 * 2 1 4 4 C 1.30616 * 108.99432 * 180.02562 * 3 2 1 5 5 O 1.33670 * 109.15686 * 0.02562 * 4 3 2 6 6 C 1.35344 * 107.68075 * 359.97438 * 5 4 3 7 7 C 1.46723 * 126.64230 * 179.97438 * 6 5 4 8 8 O 1.21688 * 120.00310 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00184 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00346 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47159 * 325.77701 * 10 9 7 12 12 C 1.53001 * 109.47040 * 85.77698 * 10 9 7 13 13 C 1.52999 * 109.47354 * 205.77499 * 10 9 7 14 14 C 1.53004 * 109.46963 * 64.49511 * 13 10 9 15 15 H 1.09003 * 109.46720 * 305.89717 * 14 13 10 16 16 C 1.52997 * 109.46934 * 65.89783 * 14 13 10 17 17 N 1.46903 * 109.46929 * 185.89602 * 14 13 10 18 18 C 1.46897 * 110.99445 * 155.40030 * 17 14 13 19 19 C 1.50705 * 109.46833 * 180.02562 * 18 17 14 20 20 O 1.21289 * 119.99669 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00190 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00023 * 179.97438 * 21 19 18 23 23 H 1.07992 * 120.00025 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99778 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00068 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00275 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47122 * 89.99729 * 26 24 22 28 28 H 1.48496 * 109.47549 * 209.99889 * 26 24 22 29 29 H 1.48502 * 109.46938 * 329.99864 * 26 24 22 30 30 H 1.09000 * 109.47291 * 90.02568 * 1 2 3 31 31 H 1.09001 * 109.47030 * 210.02545 * 1 2 3 32 32 H 1.09002 * 109.47036 * 330.02529 * 1 2 3 33 33 H 1.08003 * 125.42784 * 179.97438 * 4 3 2 34 34 H 0.97007 * 119.99913 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.47465 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47420 * 300.00299 * 12 10 9 37 37 H 1.09004 * 109.46892 * 59.99862 * 12 10 9 38 38 H 1.08999 * 109.47344 * 184.49191 * 13 10 9 39 39 H 1.08996 * 109.47226 * 304.49255 * 13 10 9 40 40 H 1.08997 * 109.47575 * 59.99978 * 16 14 13 41 41 H 1.09004 * 109.46804 * 180.02562 * 16 14 13 42 42 H 1.09008 * 109.47191 * 299.99487 * 16 14 13 43 43 H 1.00895 * 111.00128 * 31.44902 * 17 14 13 44 44 H 1.09004 * 109.47190 * 299.99665 * 18 17 14 45 45 H 1.09000 * 109.47381 * 59.99923 * 18 17 14 46 46 H 0.97006 * 119.99936 * 359.97438 * 21 19 18 47 47 H 0.96999 * 120.00044 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0006 5 8 3.5890 -0.6462 -0.0015 6 6 2.3137 -1.0992 -0.0009 7 6 1.8826 -2.5017 -0.0021 8 8 0.6965 -2.7738 -0.0019 9 7 2.8003 -3.4888 -0.0034 10 6 2.3700 -4.8891 -0.0041 11 1 1.4514 -4.9872 0.5745 12 6 2.1176 -5.3445 -1.4428 13 6 3.4622 -5.7587 0.6218 14 6 3.6363 -5.3780 2.0935 15 1 3.8182 -4.3062 2.1724 16 6 2.3664 -5.7383 2.8671 17 7 4.7777 -6.1113 2.6572 18 6 5.3431 -5.3988 3.8107 19 6 6.5094 -6.1790 4.3605 20 8 6.8369 -7.2257 3.8426 21 7 7.1878 -5.7141 5.4283 22 6 8.2484 -6.4241 5.9288 23 1 8.5406 -7.3557 5.4672 24 6 8.9481 -5.9445 7.0293 25 7 9.9651 -6.6248 7.5088 26 14 8.4432 -4.3328 7.8273 27 1 7.4430 -4.5996 8.8920 28 1 9.6368 -3.6796 8.4221 29 1 7.8484 -3.4380 6.8023 30 1 -0.3634 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.4044 1.3442 -0.0011 34 1 3.7458 -3.2720 -0.0032 35 1 1.7978 -6.3865 -1.4433 36 1 1.3394 -4.7250 -1.8888 37 1 3.0362 -5.2463 -2.0213 38 1 3.1772 -6.8082 0.5493 39 1 4.4013 -5.5998 0.0919 40 1 2.1845 -6.8100 2.7881 41 1 2.4903 -5.4667 3.9154 42 1 1.5195 -5.1942 2.4488 43 1 5.4824 -6.2788 1.9548 44 1 5.6823 -4.4114 3.4973 45 1 4.5802 -5.2930 4.5820 46 1 6.9256 -4.8771 5.8427 47 1 10.4533 -6.2902 8.2773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134019355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:39 Heat of formation + Delta-G solvation = -50.506388 kcal Electronic energy + Delta-G solvation = -29092.924516 eV Core-core repulsion = 24891.543271 eV Total energy + Delta-G solvation = -4201.381245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -43.88487 -40.23303 -38.65549 -37.58591 -35.91208 -35.25704 -33.96098 -32.50068 -31.78969 -31.60732 -30.34075 -28.17288 -27.22254 -26.42546 -24.55673 -23.85698 -22.62014 -21.53649 -21.06008 -20.34406 -19.41502 -18.74916 -18.31399 -17.35096 -16.99182 -16.62149 -16.36194 -15.53922 -15.33763 -15.17962 -14.94596 -14.68974 -14.65728 -14.17324 -13.83127 -13.66970 -13.58794 -13.42552 -13.08934 -12.88524 -12.66028 -12.62096 -12.41557 -12.26572 -12.18823 -11.99147 -11.79319 -11.55273 -11.35411 -11.31993 -11.16460 -10.99577 -10.81713 -10.61681 -10.51744 -9.99684 -9.66806 -9.59452 -9.29287 -8.60322 -8.22412 -8.17298 -6.33154 -3.84611 0.37162 1.97636 2.00496 2.65980 2.74948 3.00039 3.05157 3.13131 3.59307 3.71358 3.91655 4.08200 4.27377 4.30137 4.55619 4.60242 4.71030 4.90088 4.98392 5.02440 5.06033 5.14063 5.19801 5.26780 5.27314 5.33524 5.44182 5.51546 5.52369 5.56378 5.65766 5.71373 5.72049 5.82090 5.86508 5.89904 5.92673 5.99126 6.06786 6.30032 6.87784 7.09461 7.14479 7.54932 7.56918 7.61298 8.12423 8.57650 8.92868 9.40333 9.80483 10.79965 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.002475 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.329331 B =11310.204636 C =12955.714901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.082 3.918 3 N -0.495 5.495 4 C 0.207 3.793 5 O -0.191 6.191 6 C -0.120 4.120 7 C 0.611 3.389 8 O -0.513 6.513 9 N -0.711 5.711 10 C 0.141 3.859 11 H 0.100 0.900 12 C -0.164 4.164 13 C -0.130 4.130 14 C 0.083 3.917 15 H 0.040 0.960 16 C -0.143 4.143 17 N -0.663 5.663 18 C 0.049 3.951 19 C 0.450 3.550 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.880 3.120 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.082 0.918 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.258 0.742 34 H 0.405 0.595 35 H 0.071 0.929 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.070 0.930 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.350 0.650 44 H 0.042 0.958 45 H 0.086 0.914 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.402 14.310 -17.451 28.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.042 4.042 3 N -0.224 5.224 4 C -0.019 4.019 5 O -0.077 6.077 6 C -0.175 4.175 7 C 0.397 3.603 8 O -0.390 6.390 9 N -0.362 5.362 10 C 0.037 3.963 11 H 0.117 0.883 12 C -0.222 4.222 13 C -0.168 4.168 14 C -0.027 4.027 15 H 0.058 0.942 16 C -0.201 4.201 17 N -0.296 5.296 18 C -0.084 4.084 19 C 0.236 3.764 20 O -0.446 6.446 21 N -0.230 5.230 22 C -0.434 4.434 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.101 0.899 31 H 0.115 0.885 32 H 0.096 0.904 33 H 0.273 0.727 34 H 0.240 0.760 35 H 0.090 0.910 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.170 0.830 44 H 0.060 0.940 45 H 0.104 0.896 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -18.358 13.503 -17.250 28.581 hybrid contribution 1.271 1.733 0.427 2.192 sum -17.086 15.236 -16.822 28.409 Atomic orbital electron populations 1.20415 0.85228 1.04535 1.03769 1.22112 0.98472 0.86342 0.97288 1.70380 1.01354 1.31416 1.19228 1.28402 0.97675 0.79343 0.96435 1.84503 1.29567 1.24552 1.69086 1.22928 0.81530 0.96334 1.16717 1.16278 0.85829 0.81324 0.76882 1.90866 1.15647 1.81868 1.50665 1.46052 1.09808 1.06281 1.74055 1.21175 0.99124 0.78688 0.97281 0.88257 1.22184 1.02225 1.02065 0.95726 1.22105 0.98613 1.01087 0.94994 1.21532 0.92703 0.95617 0.92876 0.94189 1.21864 0.95745 1.02339 1.00122 1.60112 1.11189 1.47821 1.10526 1.21748 0.96853 0.94925 0.94894 1.19709 0.85562 0.87863 0.83301 1.90563 1.69143 1.24181 1.60734 1.42216 1.30101 1.22327 1.28392 1.19430 1.05363 1.06789 1.11789 0.86273 1.25041 0.96095 0.98165 0.96866 1.69621 1.19470 1.38546 1.24467 0.86672 0.79092 0.83451 0.80159 1.19569 1.20167 1.19595 0.89937 0.88549 0.90365 0.72680 0.76046 0.90986 0.92001 0.92296 0.88717 0.91091 0.91613 0.92703 0.92697 0.83000 0.93980 0.89557 0.79721 0.91600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.68 9.87 36.01 0.36 -0.33 16 2 C 0.08 0.82 7.16 -82.46 -0.59 0.23 16 3 N -0.49 -4.71 11.26 -10.88 -0.12 -4.83 16 4 C 0.21 1.37 13.21 52.25 0.69 2.06 16 5 O -0.19 -1.58 10.57 4.41 0.05 -1.53 16 6 C -0.12 -1.18 7.18 -36.84 -0.26 -1.44 16 7 C 0.61 6.19 7.76 -12.83 -0.10 6.09 16 8 O -0.51 -6.19 14.44 5.20 0.08 -6.11 16 9 N -0.71 -5.84 4.40 -55.10 -0.24 -6.09 16 10 C 0.14 1.13 2.46 -67.93 -0.17 0.96 16 11 H 0.10 0.91 5.81 -51.93 -0.30 0.61 16 12 C -0.16 -1.17 9.49 37.16 0.35 -0.82 16 13 C -0.13 -1.09 4.27 -26.73 -0.11 -1.20 16 14 C 0.08 0.90 2.63 -67.71 -0.18 0.72 16 15 H 0.04 0.43 7.24 -51.93 -0.38 0.05 16 16 C -0.14 -1.56 9.19 37.16 0.34 -1.22 16 17 N -0.66 -9.70 5.93 -107.99 -0.64 -10.34 16 18 C 0.05 0.79 5.97 -4.97 -0.03 0.76 16 19 C 0.45 10.11 7.82 -10.98 -0.09 10.03 16 20 O -0.56 -15.01 15.78 5.55 0.09 -14.92 16 21 N -0.59 -14.01 5.09 -10.96 -0.06 -14.07 16 22 C -0.31 -8.60 10.16 -14.93 -0.15 -8.75 16 23 H 0.12 3.84 7.39 -52.49 -0.39 3.46 16 24 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 25 N -0.88 -25.66 13.96 55.50 0.77 -24.89 16 26 Si 0.88 19.30 27.74 -169.99 -4.71 14.58 16 27 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 28 H -0.28 -6.07 7.11 56.52 0.40 -5.66 16 29 H -0.27 -5.39 6.52 56.52 0.37 -5.02 16 30 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.86 6.47 -51.93 -0.34 0.53 16 32 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 33 H 0.26 0.36 8.06 -52.48 -0.42 -0.06 16 34 H 0.40 2.87 8.40 -40.82 -0.34 2.53 16 35 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 38 H 0.09 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.55 8.00 -51.93 -0.42 0.14 16 40 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 41 H 0.05 0.64 7.43 -51.93 -0.39 0.26 16 42 H 0.05 0.54 6.50 -51.92 -0.34 0.20 16 43 H 0.35 5.21 7.97 -39.29 -0.31 4.90 16 44 H 0.04 0.60 8.06 -51.93 -0.42 0.18 16 45 H 0.09 1.30 7.41 -51.93 -0.38 0.92 16 46 H 0.37 7.72 5.76 -40.82 -0.24 7.48 16 47 H 0.27 7.34 8.31 -40.82 -0.34 7.01 16 LS Contribution 392.38 15.07 5.91 5.91 Total: -1.00 -35.30 392.38 -5.70 -41.00 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -6.79 Total: 13.18 kcal Atomic # 6 Polarization: 8.16 SS G_CDS: -0.04 Total: 8.12 kcal Atomic # 7 Polarization: -59.93 SS G_CDS: -0.29 Total: -60.22 kcal Atomic # 8 Polarization: -22.78 SS G_CDS: 0.21 Total: -22.57 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -4.71 Total: 14.58 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -35.30 -5.70 -41.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134019355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.508 kcal (2) G-P(sol) polarization free energy of solvation -35.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.506 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds