Wall clock time and date at job start Tue Mar 31 2020 21:28:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.33688 * 126.27371 * 2 1 4 4 C 1.30616 * 108.99432 * 180.02562 * 3 2 1 5 5 O 1.33670 * 109.15686 * 0.02562 * 4 3 2 6 6 C 1.35344 * 107.68075 * 359.97438 * 5 4 3 7 7 C 1.46723 * 126.64230 * 179.97438 * 6 5 4 8 8 O 1.21688 * 120.00310 * 180.02562 * 7 6 5 9 9 N 1.34774 * 120.00184 * 0.02562 * 7 6 5 10 10 C 1.46498 * 120.00346 * 179.97438 * 9 7 6 11 11 H 1.08996 * 109.47159 * 325.77701 * 10 9 7 12 12 C 1.53001 * 109.47040 * 85.77698 * 10 9 7 13 13 C 1.52999 * 109.47354 * 205.77499 * 10 9 7 14 14 C 1.53004 * 109.46963 * 64.49511 * 13 10 9 15 15 H 1.09003 * 109.46720 * 305.89717 * 14 13 10 16 16 C 1.52997 * 109.46934 * 65.89783 * 14 13 10 17 17 N 1.46903 * 109.46929 * 185.89602 * 14 13 10 18 18 C 1.46897 * 110.99445 * 155.40030 * 17 14 13 19 19 C 1.50705 * 109.46833 * 180.02562 * 18 17 14 20 20 O 1.21289 * 119.99669 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00190 * 180.02562 * 19 18 17 22 22 C 1.37097 * 120.00023 * 179.97438 * 21 19 18 23 23 H 1.07992 * 120.00025 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99778 * 179.97438 * 22 21 19 25 25 N 1.31413 * 120.00068 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 120.00275 * 0.02562 * 24 22 21 27 27 H 1.48500 * 109.47122 * 89.99729 * 26 24 22 28 28 H 1.48496 * 109.47549 * 209.99889 * 26 24 22 29 29 H 1.48502 * 109.46938 * 329.99864 * 26 24 22 30 30 H 1.09000 * 109.47291 * 90.02568 * 1 2 3 31 31 H 1.09001 * 109.47030 * 210.02545 * 1 2 3 32 32 H 1.09002 * 109.47036 * 330.02529 * 1 2 3 33 33 H 1.08003 * 125.42784 * 179.97438 * 4 3 2 34 34 H 0.97007 * 119.99913 * 0.02562 * 9 7 6 35 35 H 1.09002 * 109.47465 * 179.97438 * 12 10 9 36 36 H 1.09000 * 109.47420 * 300.00299 * 12 10 9 37 37 H 1.09004 * 109.46892 * 59.99862 * 12 10 9 38 38 H 1.08999 * 109.47344 * 184.49191 * 13 10 9 39 39 H 1.08996 * 109.47226 * 304.49255 * 13 10 9 40 40 H 1.08997 * 109.47575 * 59.99978 * 16 14 13 41 41 H 1.09004 * 109.46804 * 180.02562 * 16 14 13 42 42 H 1.09008 * 109.47191 * 299.99487 * 16 14 13 43 43 H 1.00895 * 111.00128 * 31.44902 * 17 14 13 44 44 H 1.09004 * 109.47190 * 299.99665 * 18 17 14 45 45 H 1.09000 * 109.47381 * 59.99923 * 18 17 14 46 46 H 0.97006 * 119.99936 * 359.97438 * 21 19 18 47 47 H 0.96999 * 120.00044 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2980 1.0778 0.0000 4 6 3.5452 0.6898 -0.0006 5 8 3.5890 -0.6462 -0.0015 6 6 2.3137 -1.0992 -0.0009 7 6 1.8826 -2.5017 -0.0021 8 8 0.6965 -2.7738 -0.0019 9 7 2.8003 -3.4888 -0.0034 10 6 2.3700 -4.8891 -0.0041 11 1 1.4514 -4.9872 0.5745 12 6 2.1176 -5.3445 -1.4428 13 6 3.4622 -5.7587 0.6218 14 6 3.6363 -5.3780 2.0935 15 1 3.8182 -4.3062 2.1724 16 6 2.3664 -5.7383 2.8671 17 7 4.7777 -6.1113 2.6572 18 6 5.3431 -5.3988 3.8107 19 6 6.5094 -6.1790 4.3605 20 8 6.8369 -7.2257 3.8426 21 7 7.1878 -5.7141 5.4283 22 6 8.2484 -6.4241 5.9288 23 1 8.5406 -7.3557 5.4672 24 6 8.9481 -5.9445 7.0293 25 7 9.9651 -6.6248 7.5088 26 14 8.4432 -4.3328 7.8273 27 1 7.4430 -4.5996 8.8920 28 1 9.6368 -3.6796 8.4221 29 1 7.8484 -3.4380 6.8023 30 1 -0.3634 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.4044 1.3442 -0.0011 34 1 3.7458 -3.2720 -0.0032 35 1 1.7978 -6.3865 -1.4433 36 1 1.3394 -4.7250 -1.8888 37 1 3.0362 -5.2463 -2.0213 38 1 3.1772 -6.8082 0.5493 39 1 4.4013 -5.5998 0.0919 40 1 2.1845 -6.8100 2.7881 41 1 2.4903 -5.4667 3.9154 42 1 1.5195 -5.1942 2.4488 43 1 5.4824 -6.2788 1.9548 44 1 5.6823 -4.4114 3.4973 45 1 4.5802 -5.2930 4.5820 46 1 6.9256 -4.8771 5.8427 47 1 10.4533 -6.2902 8.2773 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134019355.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:28:38 Heat of formation + Delta-G solvation = -81.323653 kcal Electronic energy + Delta-G solvation = -29094.260853 eV Core-core repulsion = 24891.543271 eV Total energy + Delta-G solvation = -4202.717582 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -44.48496 -40.97531 -40.32740 -38.59415 -36.67205 -36.19160 -35.82764 -33.77149 -33.25172 -32.46018 -31.23099 -28.80498 -28.35805 -27.62363 -25.65354 -25.03328 -23.30384 -22.27876 -21.75623 -21.32809 -21.13082 -20.28460 -19.35248 -17.98240 -17.84946 -17.57146 -17.29314 -17.05627 -16.69414 -16.12470 -15.94302 -15.60629 -15.51688 -15.40480 -15.12450 -14.85731 -14.52905 -14.28873 -14.13580 -14.06048 -13.95734 -13.60218 -13.35175 -13.32593 -13.20209 -12.95569 -12.84654 -12.73506 -12.42178 -12.18555 -12.14867 -11.99481 -11.98590 -11.72904 -11.67036 -11.52334 -11.24633 -10.45706 -10.35666 -10.25672 -9.92745 -9.33736 -8.41978 -6.02840 -0.26194 1.28973 1.34894 1.37909 1.40608 1.43428 1.94232 1.94760 2.12508 2.22043 2.68027 3.13105 3.14175 3.32667 3.65236 3.67327 3.78410 3.91126 4.09538 4.15396 4.33631 4.37513 4.39034 4.41718 4.43998 4.49379 4.54297 4.66186 4.72272 4.81513 4.85501 4.93174 4.93399 4.98017 5.02875 5.17359 5.26395 5.30435 5.36706 5.47077 5.52396 5.91148 6.07538 6.23288 6.43389 6.53598 6.58963 6.87233 6.92932 7.38796 7.95004 8.75613 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011800 B = 0.002475 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2372.329331 B =11310.204636 C =12955.714901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.069 3.931 3 N -0.527 5.527 4 C 0.227 3.773 5 O -0.193 6.193 6 C -0.138 4.138 7 C 0.610 3.390 8 O -0.540 6.540 9 N -0.702 5.702 10 C 0.147 3.853 11 H 0.089 0.911 12 C -0.159 4.159 13 C -0.121 4.121 14 C 0.086 3.914 15 H 0.050 0.950 16 C -0.141 4.141 17 N -0.679 5.679 18 C 0.063 3.937 19 C 0.449 3.551 20 O -0.612 6.612 21 N -0.592 5.592 22 C -0.328 4.328 23 H 0.056 0.944 24 C -0.015 4.015 25 N -0.934 5.934 26 Si 0.964 3.036 27 H -0.259 1.259 28 H -0.274 1.274 29 H -0.231 1.231 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.305 0.695 34 H 0.412 0.588 35 H 0.081 0.919 36 H 0.049 0.951 37 H 0.066 0.934 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.058 0.942 41 H 0.046 0.954 42 H 0.065 0.935 43 H 0.347 0.653 44 H 0.075 0.925 45 H 0.106 0.894 46 H 0.389 0.611 47 H 0.279 0.721 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.376 17.447 -17.754 30.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.054 4.054 3 N -0.256 5.256 4 C 0.003 3.997 5 O -0.079 6.079 6 C -0.193 4.193 7 C 0.396 3.604 8 O -0.419 6.419 9 N -0.353 5.353 10 C 0.043 3.957 11 H 0.107 0.893 12 C -0.217 4.217 13 C -0.159 4.159 14 C -0.023 4.023 15 H 0.068 0.932 16 C -0.199 4.199 17 N -0.313 5.313 18 C -0.070 4.070 19 C 0.237 3.763 20 O -0.497 6.497 21 N -0.233 5.233 22 C -0.457 4.457 23 H 0.074 0.926 24 C -0.214 4.214 25 N -0.574 5.574 26 Si 0.784 3.216 27 H -0.183 1.183 28 H -0.199 1.199 29 H -0.155 1.155 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.104 0.896 33 H 0.320 0.680 34 H 0.248 0.752 35 H 0.100 0.900 36 H 0.068 0.932 37 H 0.085 0.915 38 H 0.114 0.886 39 H 0.100 0.900 40 H 0.077 0.923 41 H 0.065 0.935 42 H 0.084 0.916 43 H 0.167 0.833 44 H 0.093 0.907 45 H 0.124 0.876 46 H 0.224 0.776 47 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -19.349 16.647 -17.575 30.990 hybrid contribution 1.622 0.682 0.439 1.813 sum -17.728 17.328 -17.137 30.136 Atomic orbital electron populations 1.20403 0.84831 1.04378 1.04106 1.22391 0.99167 0.86786 0.97067 1.70399 1.02564 1.31604 1.21014 1.29534 0.98192 0.79056 0.92958 1.84507 1.28755 1.25336 1.69294 1.22804 0.82150 0.96138 1.18241 1.16353 0.85654 0.81766 0.76587 1.90848 1.16695 1.82346 1.52050 1.45994 1.09957 1.06032 1.73295 1.21103 0.98436 0.78488 0.97649 0.89299 1.22138 1.02218 1.02377 0.95009 1.22019 0.99235 1.01143 0.93479 1.21577 0.90997 0.95676 0.94018 0.93247 1.21853 0.96241 1.02058 0.99767 1.60102 1.11878 1.48910 1.10395 1.21648 0.94418 0.95005 0.95898 1.20953 0.86021 0.87354 0.81937 1.90542 1.70624 1.26603 1.61890 1.42050 1.29354 1.22846 1.29085 1.19005 1.07847 1.05930 1.12958 0.92585 1.26108 0.95381 1.03065 0.96806 1.69802 1.21068 1.41266 1.25304 0.85378 0.79098 0.77468 0.79659 1.18340 1.19924 1.15458 0.89347 0.89515 0.89597 0.68046 0.75201 0.90013 0.93183 0.91515 0.88625 0.90012 0.92318 0.93450 0.91586 0.83319 0.90735 0.87613 0.77556 0.91132 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.30 9.87 71.24 0.70 -0.59 16 2 C 0.07 1.31 7.16 41.84 0.30 1.61 16 3 N -0.53 -9.04 11.26 -303.12 -3.41 -12.46 16 4 C 0.23 2.33 13.21 130.42 1.72 4.06 16 5 O -0.19 -2.70 10.57 -7.14 -0.08 -2.78 16 6 C -0.14 -2.52 7.18 24.05 0.17 -2.35 16 7 C 0.61 11.68 7.76 86.46 0.67 12.35 16 8 O -0.54 -12.81 14.44 -4.31 -0.06 -12.87 16 9 N -0.70 -10.23 4.40 -446.47 -1.96 -12.19 16 10 C 0.15 2.09 2.46 44.99 0.11 2.20 16 11 H 0.09 1.50 5.81 -2.39 -0.01 1.49 16 12 C -0.16 -2.02 9.49 71.98 0.68 -1.34 16 13 C -0.12 -1.76 4.27 30.60 0.13 -1.62 16 14 C 0.09 1.66 2.63 44.92 0.12 1.78 16 15 H 0.05 0.89 7.24 -2.39 -0.02 0.87 16 16 C -0.14 -2.81 9.19 71.98 0.66 -2.15 16 17 N -0.68 -18.54 5.93 -495.56 -2.94 -21.48 16 18 C 0.06 1.87 5.97 85.56 0.51 2.38 16 19 C 0.45 19.97 7.82 87.66 0.69 20.65 16 20 O -0.61 -33.43 15.78 -3.06 -0.05 -33.48 16 21 N -0.59 -27.64 5.09 -306.99 -1.56 -29.21 16 22 C -0.33 -19.12 10.16 84.04 0.85 -18.26 16 23 H 0.06 3.89 7.39 -2.91 -0.02 3.87 16 24 C -0.01 -0.82 5.50 84.93 0.47 -0.36 16 25 N -0.93 -56.04 13.96 21.66 0.30 -55.74 16 26 Si 0.96 38.45 27.74 68.60 1.90 40.35 16 27 H -0.26 -9.88 7.11 99.48 0.71 -9.17 16 28 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 29 H -0.23 -7.70 6.52 99.48 0.65 -7.05 16 30 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.09 1.56 6.47 -2.39 -0.02 1.55 16 32 H 0.09 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.30 -0.51 8.06 -2.91 -0.02 -0.54 16 34 H 0.41 4.83 8.40 -92.70 -0.78 4.05 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 37 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 38 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 39 H 0.08 1.05 8.00 -2.39 -0.02 1.03 16 40 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 41 H 0.05 1.00 7.43 -2.38 -0.02 0.99 16 42 H 0.07 1.17 6.50 -2.38 -0.02 1.15 16 43 H 0.35 9.83 7.97 -89.70 -0.72 9.11 16 44 H 0.07 1.80 8.06 -2.38 -0.02 1.78 16 45 H 0.11 2.81 7.41 -2.39 -0.02 2.79 16 46 H 0.39 15.05 5.76 -92.70 -0.53 14.51 16 47 H 0.28 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -82.15 392.38 -1.12 -83.27 By element: Atomic # 1 Polarization: 39.29 SS G_CDS: -1.05 Total: 38.23 kcal Atomic # 6 Polarization: 10.57 SS G_CDS: 7.79 Total: 18.36 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -9.58 Total: -131.07 kcal Atomic # 8 Polarization: -48.95 SS G_CDS: -0.19 Total: -49.14 kcal Atomic # 14 Polarization: 38.45 SS G_CDS: 1.90 Total: 40.35 kcal Total: -82.15 -1.12 -83.27 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134019355.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.946 kcal (2) G-P(sol) polarization free energy of solvation -82.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.123 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds