Wall clock time and date at job start Tue Mar 31 2020 21:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29934 * 125.38134 * 2 1 4 4 C 1.36065 * 108.47547 * 180.19282 * 3 2 1 5 5 C 1.47429 * 126.44628 * 179.85600 * 4 3 2 6 6 O 1.21605 * 119.99980 * 179.68393 * 5 4 3 7 7 N 1.34773 * 119.99707 * 359.69234 * 5 4 3 8 8 C 1.46499 * 119.99796 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47103 * 324.99981 * 8 7 5 10 10 C 1.53007 * 109.47060 * 84.99530 * 8 7 5 11 11 C 1.53001 * 109.47197 * 204.99376 * 8 7 5 12 12 C 1.53000 * 109.46786 * 65.00336 * 11 8 7 13 13 H 1.09003 * 109.46980 * 304.99719 * 12 11 8 14 14 C 1.52995 * 109.47134 * 184.99812 * 12 11 8 15 15 N 1.46906 * 109.47281 * 64.99922 * 12 11 8 16 16 C 1.46901 * 110.99793 * 205.00148 * 15 12 11 17 17 C 1.50701 * 109.46921 * 179.97438 * 16 15 12 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47457 * 119.99901 * 24 22 20 27 27 H 1.48501 * 109.47104 * 239.99973 * 24 22 20 28 28 C 1.36088 * 107.10630 * 359.59607 * 4 3 2 29 29 O 1.34057 * 125.37580 * 179.74641 * 2 1 3 30 30 H 1.08998 * 109.47489 * 180.28109 * 1 2 3 31 31 H 1.09000 * 109.46694 * 300.27428 * 1 2 3 32 32 H 1.08995 * 109.47217 * 60.27964 * 1 2 3 33 33 H 0.97002 * 120.00562 * 359.97438 * 7 5 4 34 34 H 1.08997 * 109.46794 * 60.00262 * 10 8 7 35 35 H 1.09005 * 109.47119 * 179.97438 * 10 8 7 36 36 H 1.09000 * 109.47200 * 300.00119 * 10 8 7 37 37 H 1.08996 * 109.47160 * 304.99933 * 11 8 7 38 38 H 1.09003 * 109.46780 * 184.99983 * 11 8 7 39 39 H 1.09003 * 109.47112 * 299.99827 * 14 12 11 40 40 H 1.09001 * 109.47056 * 59.99890 * 14 12 11 41 41 H 1.09000 * 109.47395 * 179.97438 * 14 12 11 42 42 H 1.00899 * 110.99995 * 81.04546 * 15 12 11 43 43 H 1.09002 * 109.47401 * 59.99808 * 16 15 12 44 44 H 1.09001 * 109.46874 * 299.99821 * 16 15 12 45 45 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 46 46 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 47 47 H 1.08005 * 126.52802 * 180.27897 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5611 0.6637 -0.0043 5 6 4.7440 1.5437 -0.0089 6 8 5.8604 1.0617 -0.0067 7 7 4.5879 2.8823 -0.0152 8 6 5.7632 3.7568 -0.0191 9 1 6.5571 3.3011 0.5726 10 6 6.2478 3.9535 -1.4570 11 6 5.3919 5.1131 0.5839 12 6 5.0267 4.9326 2.0587 13 1 4.2375 4.1861 2.1488 14 6 4.5362 6.2647 2.6293 15 7 6.2105 4.4862 2.8053 16 6 5.8226 3.7522 4.0172 17 6 7.0604 3.3108 4.7549 18 8 8.1577 3.5815 4.3146 19 7 6.9481 2.6160 5.9044 20 6 8.0741 2.2149 6.5757 21 1 9.0512 2.4553 6.1832 22 6 7.9584 1.4983 7.7604 23 7 6.7695 1.2054 8.2377 24 14 9.4926 0.9524 8.6755 25 1 10.6978 1.4048 7.9353 26 1 9.4951 1.5465 10.0364 27 1 9.5047 -0.5288 8.7821 28 6 3.5659 -0.6972 0.0022 29 8 2.2831 -1.0930 0.0048 30 1 -0.3634 -1.0276 0.0050 31 1 -0.3633 0.5181 0.8875 32 1 -0.3633 0.5095 -0.8924 33 1 3.6973 3.2669 -0.0172 34 1 5.4539 4.4092 -2.0488 35 1 7.1221 4.6045 -1.4600 36 1 6.5123 2.9873 -1.8867 37 1 4.5394 5.5284 0.0466 38 1 6.2402 5.7924 0.5002 39 1 5.3254 7.0112 2.5392 40 1 3.6578 6.5959 2.0754 41 1 4.2755 6.1360 3.6799 42 1 6.8106 5.2653 3.0310 43 1 5.2342 2.8776 3.7396 44 1 5.2279 4.4010 4.6603 45 1 6.0706 2.3999 6.2566 46 1 6.6888 0.7054 9.0650 47 1 4.4361 -1.3370 0.0053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134168752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:35 Heat of formation + Delta-G solvation = -60.567058 kcal Electronic energy + Delta-G solvation = -29456.103766 eV Core-core repulsion = 25254.286258 eV Total energy + Delta-G solvation = -4201.817508 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.63437 -39.71257 -38.38005 -37.18693 -35.14391 -35.03347 -33.82281 -32.55196 -31.54394 -31.10814 -30.21585 -28.08972 -26.84450 -26.15948 -24.58674 -23.85358 -22.02456 -21.26232 -20.65338 -20.30599 -19.20794 -18.33914 -17.82601 -17.13736 -16.63971 -16.30412 -15.80801 -15.35690 -14.89532 -14.71593 -14.64931 -14.47021 -14.17464 -13.90435 -13.78937 -13.70672 -13.52509 -13.41728 -13.08350 -12.91295 -12.71427 -12.38265 -12.19210 -12.09734 -11.91153 -11.51818 -11.48834 -11.38387 -11.09154 -11.06532 -11.01625 -10.78234 -10.68885 -10.30354 -10.17279 -10.10939 -9.46531 -9.24422 -8.95473 -8.38927 -7.95824 -7.89029 -6.36625 -3.76998 0.95165 1.80713 2.34761 3.08885 3.20026 3.30040 3.30796 3.37939 3.64504 3.97642 4.15460 4.40116 4.56842 4.58433 4.70493 4.94601 4.97804 4.98128 5.17388 5.19224 5.21151 5.30184 5.37195 5.38555 5.41448 5.48789 5.51438 5.57916 5.71525 5.75154 5.83409 5.85716 5.86616 6.00425 6.11827 6.13540 6.22562 6.34194 6.39070 6.58925 7.19123 7.31479 7.58415 7.60449 7.76349 8.12354 8.22639 8.67213 9.23581 9.60399 10.12198 10.81409 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.003039 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.233350 B = 9211.605082 C =10886.627952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.193 3.807 3 N -0.463 5.463 4 C -0.069 4.069 5 C 0.601 3.399 6 O -0.527 6.527 7 N -0.704 5.704 8 C 0.143 3.857 9 H 0.112 0.888 10 C -0.162 4.162 11 C -0.111 4.111 12 C 0.080 3.920 13 H 0.076 0.924 14 C -0.183 4.183 15 N -0.659 5.659 16 C 0.053 3.947 17 C 0.443 3.557 18 O -0.581 6.581 19 N -0.566 5.566 20 C -0.296 4.296 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.012 3.988 29 O -0.198 6.198 30 H 0.089 0.911 31 H 0.099 0.901 32 H 0.098 0.902 33 H 0.403 0.597 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.058 0.942 37 H 0.066 0.934 38 H 0.081 0.919 39 H 0.058 0.942 40 H 0.058 0.942 41 H 0.055 0.945 42 H 0.349 0.651 43 H 0.081 0.919 44 H 0.041 0.959 45 H 0.391 0.609 46 H 0.270 0.730 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.180 2.408 -18.397 24.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.016 4.016 3 N -0.194 5.194 4 C -0.189 4.189 5 C 0.385 3.615 6 O -0.403 6.403 7 N -0.355 5.355 8 C 0.039 3.961 9 H 0.130 0.870 10 C -0.220 4.220 11 C -0.150 4.150 12 C -0.030 4.030 13 H 0.094 0.906 14 C -0.242 4.242 15 N -0.291 5.291 16 C -0.079 4.079 17 C 0.229 3.771 18 O -0.465 6.465 19 N -0.203 5.203 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.062 4.062 29 O -0.084 6.084 30 H 0.108 0.892 31 H 0.118 0.882 32 H 0.116 0.884 33 H 0.237 0.763 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.100 0.900 39 H 0.077 0.923 40 H 0.077 0.923 41 H 0.074 0.926 42 H 0.169 0.831 43 H 0.099 0.901 44 H 0.059 0.941 45 H 0.224 0.776 46 H 0.080 0.920 47 H 0.248 0.752 Dipole moment (debyes) X Y Z Total from point charges -14.800 2.192 -18.884 24.092 hybrid contribution -0.366 -0.260 1.430 1.499 sum -15.165 1.933 -17.454 23.203 Atomic orbital electron populations 1.20293 0.80954 1.04954 1.05249 1.26316 0.96659 0.78408 1.00238 1.70711 1.00766 1.29992 1.17938 1.21889 0.92120 0.93161 1.11727 1.16702 0.86040 0.82112 0.76628 1.90872 1.24133 1.75255 1.50010 1.45834 1.10465 1.05183 1.73986 1.21080 0.88560 0.90081 0.96378 0.86983 1.22184 1.01115 1.02216 0.96517 1.21861 1.02003 0.96346 0.94776 1.21607 0.92844 0.95156 0.93439 0.90551 1.22529 1.01642 0.98621 1.01450 1.60155 1.15987 1.30270 1.22729 1.21657 0.96722 0.98425 0.91140 1.19826 0.90074 0.84172 0.83072 1.90522 1.27763 1.60085 1.68134 1.41867 1.09572 1.48515 1.20311 1.19754 0.87979 1.31358 1.03470 0.87897 1.25252 0.98110 0.97366 0.97324 1.69627 1.22334 1.40414 1.22137 0.85807 0.81397 0.78214 0.78980 1.19207 1.20825 1.20768 1.25335 0.84721 0.95866 1.00228 1.84400 1.16812 1.37890 1.69254 0.89209 0.88242 0.88392 0.76255 0.93015 0.91470 0.92298 0.91533 0.90028 0.92306 0.92317 0.92568 0.83132 0.90074 0.94059 0.77571 0.92022 0.75246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.26 10.51 36.00 0.38 0.12 16 2 C 0.19 1.83 8.30 -13.08 -0.11 1.72 16 3 N -0.46 -5.40 11.06 -7.65 -0.08 -5.49 16 4 C -0.07 -0.90 6.99 -83.02 -0.58 -1.48 16 5 C 0.60 8.95 7.78 -12.52 -0.10 8.85 16 6 O -0.53 -9.66 16.55 5.27 0.09 -9.57 16 7 N -0.70 -8.75 4.44 -54.88 -0.24 -9.00 16 8 C 0.14 1.80 2.52 -67.93 -0.17 1.62 16 9 H 0.11 1.89 7.05 -51.93 -0.37 1.52 16 10 C -0.16 -1.78 9.48 37.16 0.35 -1.43 16 11 C -0.11 -1.16 4.43 -26.73 -0.12 -1.28 16 12 C 0.08 0.98 2.53 -67.71 -0.17 0.80 16 13 H 0.08 0.97 7.28 -51.93 -0.38 0.60 16 14 C -0.18 -1.92 9.16 37.16 0.34 -1.58 16 15 N -0.66 -10.78 5.24 -107.99 -0.57 -11.35 16 16 C 0.05 0.99 5.97 -4.97 -0.03 0.96 16 17 C 0.44 10.92 7.82 -10.98 -0.09 10.83 16 18 O -0.58 -16.32 15.78 5.55 0.09 -16.23 16 19 N -0.57 -14.93 5.29 -10.96 -0.06 -14.99 16 20 C -0.30 -8.53 9.68 -14.94 -0.14 -8.68 16 21 H 0.10 3.12 7.16 -52.49 -0.38 2.74 16 22 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -25.24 13.05 55.50 0.72 -24.52 16 24 Si 0.93 21.65 29.55 -169.99 -5.02 16.63 16 25 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 26 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 27 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 28 C 0.01 0.14 11.95 29.96 0.36 0.49 16 29 O -0.20 -2.04 10.73 6.49 0.07 -1.98 16 30 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 31 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 32 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 33 H 0.40 4.29 8.33 -40.82 -0.34 3.95 16 34 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.06 0.60 8.13 -51.93 -0.42 0.17 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.06 0.64 7.45 -51.93 -0.39 0.25 16 42 H 0.35 5.86 8.17 -39.29 -0.32 5.54 16 43 H 0.08 1.49 8.06 -51.93 -0.42 1.07 16 44 H 0.04 0.70 7.44 -51.93 -0.39 0.31 16 45 H 0.39 9.91 7.90 -40.82 -0.32 9.59 16 46 H 0.27 7.11 8.31 -40.82 -0.34 6.77 16 47 H 0.23 2.06 8.06 -52.48 -0.42 1.64 16 LS Contribution 402.25 15.07 6.06 6.06 Total: -1.00 -35.63 402.25 -6.20 -41.83 By element: Atomic # 1 Polarization: 24.24 SS G_CDS: -7.08 Total: 17.16 kcal Atomic # 6 Polarization: 11.61 SS G_CDS: -0.17 Total: 11.43 kcal Atomic # 7 Polarization: -65.10 SS G_CDS: -0.23 Total: -65.33 kcal Atomic # 8 Polarization: -28.02 SS G_CDS: 0.24 Total: -27.78 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.63 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.63 -6.20 -41.83 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134168752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.740 kcal (2) G-P(sol) polarization free energy of solvation -35.626 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds