Wall clock time and date at job start Tue Mar 31 2020 21:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29934 * 125.38134 * 2 1 4 4 C 1.36065 * 108.47547 * 180.19282 * 3 2 1 5 5 C 1.47429 * 126.44628 * 179.85600 * 4 3 2 6 6 O 1.21605 * 119.99980 * 179.68393 * 5 4 3 7 7 N 1.34773 * 119.99707 * 359.69234 * 5 4 3 8 8 C 1.46499 * 119.99796 * 179.97438 * 7 5 4 9 9 H 1.08997 * 109.47103 * 324.99981 * 8 7 5 10 10 C 1.53007 * 109.47060 * 84.99530 * 8 7 5 11 11 C 1.53001 * 109.47197 * 204.99376 * 8 7 5 12 12 C 1.53000 * 109.46786 * 65.00336 * 11 8 7 13 13 H 1.09003 * 109.46980 * 304.99719 * 12 11 8 14 14 C 1.52995 * 109.47134 * 184.99812 * 12 11 8 15 15 N 1.46906 * 109.47281 * 64.99922 * 12 11 8 16 16 C 1.46901 * 110.99793 * 205.00148 * 15 12 11 17 17 C 1.50701 * 109.46921 * 179.97438 * 16 15 12 18 18 O 1.21294 * 119.99849 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99795 * 179.97438 * 17 16 15 20 20 C 1.37101 * 119.99707 * 180.02562 * 19 17 16 21 21 H 1.08002 * 119.99704 * 359.97438 * 20 19 17 22 22 C 1.38941 * 119.99927 * 180.02562 * 20 19 17 23 23 N 1.31417 * 120.00180 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00273 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.46986 * 359.97438 * 24 22 20 26 26 H 1.48494 * 109.47457 * 119.99901 * 24 22 20 27 27 H 1.48501 * 109.47104 * 239.99973 * 24 22 20 28 28 C 1.36088 * 107.10630 * 359.59607 * 4 3 2 29 29 O 1.34057 * 125.37580 * 179.74641 * 2 1 3 30 30 H 1.08998 * 109.47489 * 180.28109 * 1 2 3 31 31 H 1.09000 * 109.46694 * 300.27428 * 1 2 3 32 32 H 1.08995 * 109.47217 * 60.27964 * 1 2 3 33 33 H 0.97002 * 120.00562 * 359.97438 * 7 5 4 34 34 H 1.08997 * 109.46794 * 60.00262 * 10 8 7 35 35 H 1.09005 * 109.47119 * 179.97438 * 10 8 7 36 36 H 1.09000 * 109.47200 * 300.00119 * 10 8 7 37 37 H 1.08996 * 109.47160 * 304.99933 * 11 8 7 38 38 H 1.09003 * 109.46780 * 184.99983 * 11 8 7 39 39 H 1.09003 * 109.47112 * 299.99827 * 14 12 11 40 40 H 1.09001 * 109.47056 * 59.99890 * 14 12 11 41 41 H 1.09000 * 109.47395 * 179.97438 * 14 12 11 42 42 H 1.00899 * 110.99995 * 81.04546 * 15 12 11 43 43 H 1.09002 * 109.47401 * 59.99808 * 16 15 12 44 44 H 1.09001 * 109.46874 * 299.99821 * 16 15 12 45 45 H 0.96995 * 120.00011 * 0.02562 * 19 17 16 46 46 H 0.97000 * 119.99884 * 180.02562 * 23 22 20 47 47 H 1.08005 * 126.52802 * 180.27897 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0594 0.0000 4 6 3.5611 0.6637 -0.0043 5 6 4.7440 1.5437 -0.0089 6 8 5.8604 1.0617 -0.0067 7 7 4.5879 2.8823 -0.0152 8 6 5.7632 3.7568 -0.0191 9 1 6.5571 3.3011 0.5726 10 6 6.2478 3.9535 -1.4570 11 6 5.3919 5.1131 0.5839 12 6 5.0267 4.9326 2.0587 13 1 4.2375 4.1861 2.1488 14 6 4.5362 6.2647 2.6293 15 7 6.2105 4.4862 2.8053 16 6 5.8226 3.7522 4.0172 17 6 7.0604 3.3108 4.7549 18 8 8.1577 3.5815 4.3146 19 7 6.9481 2.6160 5.9044 20 6 8.0741 2.2149 6.5757 21 1 9.0512 2.4553 6.1832 22 6 7.9584 1.4983 7.7604 23 7 6.7695 1.2054 8.2377 24 14 9.4926 0.9524 8.6755 25 1 10.6978 1.4048 7.9353 26 1 9.4951 1.5465 10.0364 27 1 9.5047 -0.5288 8.7821 28 6 3.5659 -0.6972 0.0022 29 8 2.2831 -1.0930 0.0048 30 1 -0.3634 -1.0276 0.0050 31 1 -0.3633 0.5181 0.8875 32 1 -0.3633 0.5095 -0.8924 33 1 3.6973 3.2669 -0.0172 34 1 5.4539 4.4092 -2.0488 35 1 7.1221 4.6045 -1.4600 36 1 6.5123 2.9873 -1.8867 37 1 4.5394 5.5284 0.0466 38 1 6.2402 5.7924 0.5002 39 1 5.3254 7.0112 2.5392 40 1 3.6578 6.5959 2.0754 41 1 4.2755 6.1360 3.6799 42 1 6.8106 5.2653 3.0310 43 1 5.2342 2.8776 3.7396 44 1 5.2279 4.4010 4.6603 45 1 6.0706 2.3999 6.2566 46 1 6.6888 0.7054 9.0650 47 1 4.4361 -1.3370 0.0053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001134168752.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:34 Heat of formation + Delta-G solvation = -90.795780 kcal Electronic energy + Delta-G solvation = -29457.414582 eV Core-core repulsion = 25254.286258 eV Total energy + Delta-G solvation = -4203.128324 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -44.45887 -40.84069 -40.20147 -38.47672 -36.35149 -35.98789 -35.82398 -33.36263 -33.24612 -32.55417 -31.32198 -28.75317 -27.98917 -27.65452 -25.76846 -25.45969 -22.87078 -22.17547 -21.65412 -21.39410 -21.10428 -19.95446 -19.27527 -17.95373 -17.82458 -17.55115 -17.16512 -16.84961 -16.43316 -16.11097 -15.96158 -15.62412 -15.56467 -15.14531 -14.89100 -14.81346 -14.65382 -14.35428 -14.00394 -13.89075 -13.62155 -13.56429 -13.37816 -13.28724 -13.14943 -12.99352 -12.84453 -12.68432 -12.43672 -12.33736 -12.14493 -12.08149 -11.93924 -11.75234 -11.68366 -11.53777 -11.27473 -10.38003 -10.20505 -10.04162 -9.92337 -9.24846 -8.49194 -5.98209 0.04970 0.95706 1.34327 1.39117 1.54055 1.58272 2.01752 2.11127 2.24334 2.27296 2.88910 2.93588 3.17516 3.52914 3.67412 3.78584 3.80406 4.04906 4.18425 4.30071 4.39012 4.39931 4.42506 4.50924 4.52182 4.55059 4.58709 4.69534 4.74806 4.77386 4.83075 4.84820 4.89833 5.01608 5.13828 5.22983 5.26115 5.30120 5.38189 5.38340 5.55732 5.90187 6.13128 6.30768 6.48189 6.57029 6.60911 7.09777 7.16024 7.52435 8.08006 8.68676 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008895 B = 0.003039 C = 0.002571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3147.233350 B = 9211.605082 C =10886.627952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.200 3.800 3 N -0.481 5.481 4 C -0.095 4.095 5 C 0.594 3.406 6 O -0.574 6.574 7 N -0.690 5.690 8 C 0.143 3.857 9 H 0.064 0.936 10 C -0.155 4.155 11 C -0.102 4.102 12 C 0.081 3.919 13 H 0.072 0.928 14 C -0.176 4.176 15 N -0.674 5.674 16 C 0.072 3.928 17 C 0.438 3.562 18 O -0.620 6.620 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.078 0.922 22 C -0.014 4.014 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.274 1.274 26 H -0.267 1.267 27 H -0.271 1.271 28 C 0.013 3.987 29 O -0.198 6.198 30 H 0.109 0.891 31 H 0.111 0.889 32 H 0.116 0.884 33 H 0.413 0.587 34 H 0.076 0.924 35 H 0.076 0.924 36 H 0.035 0.965 37 H 0.101 0.899 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.084 0.916 41 H 0.045 0.955 42 H 0.345 0.655 43 H 0.084 0.916 44 H 0.065 0.935 45 H 0.395 0.605 46 H 0.278 0.722 47 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.542 3.131 -18.768 26.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.009 4.009 3 N -0.212 5.212 4 C -0.214 4.214 5 C 0.380 3.620 6 O -0.454 6.454 7 N -0.340 5.340 8 C 0.039 3.961 9 H 0.083 0.917 10 C -0.213 4.213 11 C -0.140 4.140 12 C -0.029 4.029 13 H 0.090 0.910 14 C -0.235 4.235 15 N -0.306 5.306 16 C -0.061 4.061 17 C 0.225 3.775 18 O -0.507 6.507 19 N -0.211 5.211 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.213 4.213 23 N -0.562 5.562 24 Si 0.817 3.183 25 H -0.199 1.199 26 H -0.192 1.192 27 H -0.196 1.196 28 C -0.061 4.061 29 O -0.084 6.084 30 H 0.128 0.872 31 H 0.129 0.871 32 H 0.135 0.865 33 H 0.250 0.750 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.054 0.946 37 H 0.120 0.880 38 H 0.106 0.894 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.065 0.935 42 H 0.165 0.835 43 H 0.102 0.898 44 H 0.083 0.917 45 H 0.228 0.772 46 H 0.087 0.913 47 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -17.230 2.955 -19.260 26.011 hybrid contribution 0.278 -0.492 1.502 1.605 sum -16.952 2.464 -17.758 24.674 Atomic orbital electron populations 1.20624 0.77386 1.06754 1.06602 1.27405 0.98239 0.77589 0.97695 1.70688 1.00136 1.30927 1.19475 1.21760 0.92320 0.93593 1.13715 1.17035 0.86034 0.82938 0.75969 1.90837 1.25994 1.76120 1.52456 1.45763 1.11016 1.04516 1.72716 1.21008 0.87454 0.90779 0.96877 0.91731 1.22111 1.02307 1.01400 0.95474 1.21846 1.03674 0.94966 0.93532 1.21708 0.91082 0.96107 0.93967 0.90986 1.22443 1.02749 0.97271 1.01029 1.60154 1.18177 1.30585 1.21714 1.21431 0.93560 0.99234 0.91870 1.20882 0.91552 0.82642 0.82402 1.90485 1.30018 1.61233 1.68931 1.41940 1.09121 1.49097 1.20982 1.19704 0.87892 1.33687 1.05029 0.90442 1.26066 1.01342 0.96554 0.97369 1.69685 1.23810 1.40166 1.22541 0.84859 0.77314 0.78188 0.77895 1.19858 1.19237 1.19587 1.25631 0.85570 0.95648 0.99276 1.84435 1.16448 1.38267 1.69259 0.87222 0.87090 0.86532 0.74960 0.90546 0.90547 0.94553 0.88021 0.89364 0.91892 0.89722 0.93540 0.83544 0.89807 0.91680 0.77168 0.91268 0.73976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.36 10.51 71.23 0.75 0.39 16 2 C 0.20 3.48 8.30 88.39 0.73 4.22 16 3 N -0.48 -10.80 11.06 -293.03 -3.24 -14.04 16 4 C -0.09 -2.52 6.99 40.41 0.28 -2.23 16 5 C 0.59 18.39 7.78 86.66 0.67 19.07 16 6 O -0.57 -22.47 16.55 -4.05 -0.07 -22.53 16 7 N -0.69 -17.10 4.44 -445.79 -1.98 -19.08 16 8 C 0.14 3.58 2.52 44.99 0.11 3.70 16 9 H 0.06 2.30 7.05 -2.39 -0.02 2.28 16 10 C -0.15 -3.32 9.48 71.98 0.68 -2.64 16 11 C -0.10 -1.92 4.43 30.59 0.14 -1.78 16 12 C 0.08 1.85 2.53 44.91 0.11 1.96 16 13 H 0.07 1.72 7.28 -2.39 -0.02 1.70 16 14 C -0.18 -3.21 9.16 71.98 0.66 -2.55 16 15 N -0.67 -22.10 5.24 -495.56 -2.60 -24.70 16 16 C 0.07 2.69 5.97 85.56 0.51 3.20 16 17 C 0.44 22.27 7.82 87.66 0.69 22.96 16 18 O -0.62 -36.32 15.78 -3.07 -0.05 -36.37 16 19 N -0.57 -31.23 5.29 -306.98 -1.62 -32.85 16 20 C -0.33 -19.84 9.68 84.04 0.81 -19.02 16 21 H 0.08 4.92 7.16 -2.91 -0.02 4.90 16 22 C -0.01 -0.76 5.50 84.92 0.47 -0.30 16 23 N -0.92 -51.31 13.05 21.66 0.28 -51.03 16 24 Si 0.99 44.47 29.55 68.60 2.03 46.49 16 25 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 26 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 27 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 28 C 0.01 0.29 11.95 67.32 0.80 1.10 16 29 O -0.20 -3.90 10.73 0.32 0.00 -3.90 16 30 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 31 H 0.11 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.12 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.41 8.32 8.33 -92.71 -0.77 7.55 16 34 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.08 1.48 8.14 -2.38 -0.02 1.47 16 36 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 37 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 38 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.11 8.13 -2.39 -0.02 1.09 16 40 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.05 0.95 7.45 -2.39 -0.02 0.93 16 42 H 0.35 11.68 8.17 -89.69 -0.73 10.94 16 43 H 0.08 3.11 8.06 -2.39 -0.02 3.09 16 44 H 0.07 2.14 7.44 -2.39 -0.02 2.12 16 45 H 0.39 20.47 7.90 -92.71 -0.73 19.74 16 46 H 0.28 14.38 8.31 -92.71 -0.77 13.61 16 47 H 0.24 4.54 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -80.97 402.25 -1.03 -82.00 By element: Atomic # 1 Polarization: 49.16 SS G_CDS: -1.21 Total: 47.94 kcal Atomic # 6 Polarization: 20.64 SS G_CDS: 7.42 Total: 28.06 kcal Atomic # 7 Polarization: -132.54 SS G_CDS: -9.16 Total: -141.70 kcal Atomic # 8 Polarization: -62.69 SS G_CDS: -0.11 Total: -62.80 kcal Atomic # 14 Polarization: 44.47 SS G_CDS: 2.03 Total: 46.49 kcal Total: -80.97 -1.03 -82.00 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134168752.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.795 kcal (2) G-P(sol) polarization free energy of solvation -80.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.761 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds