Wall clock time and date at job start Tue Mar 31 2020 21:39:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29928 * 125.37924 * 2 1 4 4 C 1.36064 * 108.47964 * 180.19032 * 3 2 1 5 5 C 1.47423 * 126.45123 * 179.85849 * 4 3 2 6 6 O 1.21614 * 119.99590 * 179.68568 * 5 4 3 7 7 N 1.34769 * 119.99858 * 359.69175 * 5 4 3 8 8 C 1.46505 * 120.00050 * 179.97438 * 7 5 4 9 9 H 1.09003 * 109.46711 * 33.55520 * 8 7 5 10 10 C 1.52989 * 109.47299 * 273.56064 * 8 7 5 11 11 C 1.52995 * 109.47152 * 153.55412 * 8 7 5 12 12 C 1.53004 * 109.47616 * 294.54777 * 11 8 7 13 13 H 1.09003 * 109.46676 * 54.62361 * 12 11 8 14 14 C 1.52994 * 109.47004 * 294.62955 * 12 11 8 15 15 N 1.46894 * 109.47274 * 174.62252 * 12 11 8 16 16 C 1.46893 * 111.00245 * 203.26109 * 15 12 11 17 17 C 1.50707 * 109.47523 * 180.02562 * 16 15 12 18 18 O 1.21295 * 119.99460 * 359.72787 * 17 16 15 19 19 N 1.34775 * 120.00164 * 180.02562 * 17 16 15 20 20 C 1.37096 * 119.99928 * 180.02562 * 19 17 16 21 21 H 1.08003 * 119.99607 * 359.97438 * 20 19 17 22 22 C 1.38948 * 119.99788 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00360 * 0.02562 * 22 20 19 24 24 Si 1.86802 * 119.99601 * 179.97438 * 22 20 19 25 25 H 1.48500 * 109.47376 * 90.00545 * 24 22 20 26 26 H 1.48504 * 109.46853 * 210.00106 * 24 22 20 27 27 H 1.48503 * 109.47498 * 330.00017 * 24 22 20 28 28 C 1.36092 * 107.10077 * 359.59810 * 4 3 2 29 29 O 1.34055 * 125.37582 * 179.74902 * 2 1 3 30 30 H 1.08999 * 109.47288 * 180.27708 * 1 2 3 31 31 H 1.09002 * 109.46977 * 300.27895 * 1 2 3 32 32 H 1.08998 * 109.47206 * 60.27434 * 1 2 3 33 33 H 0.97001 * 120.00601 * 359.97438 * 7 5 4 34 34 H 1.09001 * 109.47521 * 179.97438 * 10 8 7 35 35 H 1.09000 * 109.47054 * 299.99861 * 10 8 7 36 36 H 1.09007 * 109.47310 * 59.99379 * 10 8 7 37 37 H 1.09010 * 109.47196 * 174.55035 * 11 8 7 38 38 H 1.08995 * 109.47057 * 54.55378 * 11 8 7 39 39 H 1.09003 * 109.46919 * 299.99257 * 14 12 11 40 40 H 1.08992 * 109.47707 * 59.99763 * 14 12 11 41 41 H 1.09000 * 109.47028 * 179.97438 * 14 12 11 42 42 H 1.00900 * 111.00423 * 327.22106 * 15 12 11 43 43 H 1.09002 * 109.47171 * 60.00577 * 16 15 12 44 44 H 1.08997 * 109.47475 * 300.00216 * 16 15 12 45 45 H 0.97000 * 119.99705 * 359.97438 * 19 17 16 46 46 H 0.96998 * 120.00216 * 179.97438 * 23 22 20 47 47 H 1.08000 * 126.52643 * 180.27299 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2593 1.0593 0.0000 4 6 3.5612 0.6638 -0.0043 5 6 4.7439 1.5438 -0.0087 6 8 5.8604 1.0617 -0.0066 7 7 4.5878 2.8824 -0.0151 8 6 5.7632 3.7570 -0.0189 9 1 6.5661 3.2840 -0.5846 10 6 6.2255 3.9963 1.4197 11 6 5.4016 5.0945 -0.6677 12 6 5.0700 4.8720 -2.1447 13 1 4.2900 4.1156 -2.2319 14 6 6.3237 4.3990 -2.8831 15 7 4.5992 6.1315 -2.7360 16 6 3.7746 5.8789 -3.9251 17 6 3.3114 7.1913 -4.5034 18 8 3.6323 8.2343 -3.9737 19 7 2.5357 7.2059 -5.6055 20 6 2.1148 8.3998 -6.1317 21 1 2.4046 9.3286 -5.6629 22 6 1.3156 8.4148 -7.2682 23 7 0.9627 7.2846 -7.8384 24 14 0.7416 10.0416 -7.9849 25 1 1.7342 10.5222 -8.9793 26 1 -0.5732 9.8534 -8.6491 27 1 0.6073 11.0424 -6.8960 28 6 3.5660 -0.6971 0.0022 29 8 2.2831 -1.0930 0.0048 30 1 -0.3634 -1.0276 0.0050 31 1 -0.3633 0.5182 0.8875 32 1 -0.3633 0.5096 -0.8924 33 1 3.6973 3.2669 -0.0171 34 1 7.1003 4.6466 1.4168 35 1 5.4227 4.4692 1.9854 36 1 6.4832 3.0433 1.8819 37 1 6.2458 5.7790 -0.5840 38 1 4.5360 5.5216 -0.1613 39 1 7.1038 5.1553 -2.7959 40 1 6.6731 3.4644 -2.4444 41 1 6.0874 4.2400 -3.9352 42 1 4.0961 6.6837 -2.0578 43 1 2.9085 5.2788 -3.6460 44 1 4.3639 5.3425 -4.6688 45 1 2.2759 6.3716 -6.0267 46 1 0.4044 7.2951 -8.6315 47 1 4.4361 -1.3368 0.0053 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001134168753.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:39:39 Heat of formation + Delta-G solvation = -60.303171 kcal Electronic energy + Delta-G solvation = -28804.840482 eV Core-core repulsion = 24603.034417 eV Total energy + Delta-G solvation = -4201.806065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -43.81111 -40.04331 -38.42336 -37.36018 -35.32696 -35.17240 -33.85882 -32.70635 -31.77028 -31.17777 -30.11743 -28.24766 -27.06968 -26.22401 -24.84424 -23.95060 -22.20105 -21.43760 -20.80749 -20.15657 -19.23000 -18.52297 -17.85492 -17.30838 -16.87289 -16.41965 -16.28278 -15.42801 -15.16163 -14.96774 -14.77732 -14.43717 -14.27582 -14.15577 -13.91072 -13.83226 -13.59050 -13.52541 -13.12761 -13.00062 -12.75881 -12.45344 -12.25313 -12.08241 -11.86698 -11.68479 -11.61203 -11.48579 -11.21898 -11.17162 -11.01655 -10.83569 -10.65210 -10.43090 -10.38360 -10.20045 -9.49212 -9.47183 -9.23704 -8.41562 -8.02917 -7.93679 -6.40035 -3.80787 0.73890 1.62279 2.17763 2.82127 3.01675 3.18955 3.27279 3.33198 3.48093 3.93227 4.05211 4.25969 4.38349 4.41147 4.71827 4.78533 4.83465 4.93175 4.94789 5.05923 5.13060 5.19765 5.24101 5.27531 5.32107 5.32527 5.43323 5.49432 5.65036 5.71390 5.77294 5.80984 5.87624 5.90023 5.99884 6.06375 6.13955 6.25583 6.30013 6.44200 7.00270 7.29273 7.31478 7.56701 7.72463 7.89197 8.08360 8.63378 9.19667 9.56497 10.08131 10.77813 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011054 B = 0.002334 C = 0.002021 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2532.457357 B =11994.778758 C =13854.315077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.200 3.800 3 N -0.462 5.462 4 C -0.072 4.072 5 C 0.604 3.396 6 O -0.538 6.538 7 N -0.704 5.704 8 C 0.140 3.860 9 H 0.098 0.902 10 C -0.163 4.163 11 C -0.128 4.128 12 C 0.083 3.917 13 H 0.041 0.959 14 C -0.143 4.143 15 N -0.663 5.663 16 C 0.051 3.949 17 C 0.442 3.558 18 O -0.583 6.583 19 N -0.565 5.565 20 C -0.298 4.298 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.903 5.903 24 Si 0.930 3.070 25 H -0.278 1.278 26 H -0.284 1.284 27 H -0.270 1.270 28 C 0.011 3.989 29 O -0.197 6.197 30 H 0.090 0.910 31 H 0.100 0.900 32 H 0.102 0.898 33 H 0.409 0.591 34 H 0.069 0.931 35 H 0.058 0.942 36 H 0.059 0.941 37 H 0.092 0.908 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.348 0.652 43 H 0.042 0.958 44 H 0.084 0.916 45 H 0.392 0.608 46 H 0.271 0.729 47 H 0.231 0.769 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.251 -18.531 17.941 25.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.009 4.009 3 N -0.193 5.193 4 C -0.192 4.192 5 C 0.390 3.610 6 O -0.416 6.416 7 N -0.355 5.355 8 C 0.036 3.964 9 H 0.116 0.884 10 C -0.221 4.221 11 C -0.166 4.166 12 C -0.027 4.027 13 H 0.059 0.941 14 C -0.200 4.200 15 N -0.297 5.297 16 C -0.081 4.081 17 C 0.227 3.773 18 O -0.467 6.467 19 N -0.201 5.201 20 C -0.428 4.428 21 H 0.121 0.879 22 C -0.180 4.180 23 N -0.544 5.544 24 Si 0.757 3.243 25 H -0.204 1.204 26 H -0.210 1.210 27 H -0.194 1.194 28 C -0.063 4.063 29 O -0.083 6.083 30 H 0.109 0.891 31 H 0.118 0.882 32 H 0.120 0.880 33 H 0.244 0.756 34 H 0.088 0.912 35 H 0.077 0.923 36 H 0.078 0.922 37 H 0.110 0.890 38 H 0.088 0.912 39 H 0.082 0.918 40 H 0.072 0.928 41 H 0.073 0.927 42 H 0.168 0.832 43 H 0.060 0.940 44 H 0.103 0.897 45 H 0.225 0.775 46 H 0.081 0.919 47 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges 3.479 -17.451 17.765 25.144 hybrid contribution -1.455 -0.627 -0.406 1.636 sum 2.024 -18.078 17.359 25.144 Atomic orbital electron populations 1.20350 0.80704 1.05056 1.05606 1.26388 0.96730 0.78192 0.99610 1.70757 1.00648 1.29996 1.17920 1.21815 0.92206 0.93085 1.12102 1.16718 0.86113 0.82006 0.76200 1.90825 1.24243 1.75434 1.51053 1.45930 1.10820 1.05205 1.73546 1.21147 0.88205 0.90115 0.96958 0.88450 1.22173 1.01685 1.02274 0.95954 1.22076 1.03456 0.96143 0.94962 1.21509 0.97170 0.91361 0.92654 0.94112 1.21858 0.97550 1.00319 1.00305 1.60122 1.44086 1.16488 1.08966 1.21704 0.95644 0.96754 0.94040 1.19826 0.83617 0.90091 0.83719 1.90518 1.60282 1.33635 1.62301 1.41869 1.44410 1.09497 1.24362 1.19703 1.27816 0.86703 1.08584 0.87939 1.25259 0.97254 0.98682 0.96784 1.69614 1.37263 1.25839 1.21683 0.85861 0.77862 0.81487 0.79093 1.20396 1.20954 1.19427 1.25277 0.84869 0.95685 1.00469 1.84412 1.16724 1.37987 1.69196 0.89113 0.88176 0.87977 0.75554 0.91168 0.92336 0.92170 0.88964 0.91176 0.91765 0.92755 0.92708 0.83199 0.94032 0.89743 0.77492 0.91904 0.75322 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.25 10.51 36.01 0.38 0.13 16 2 C 0.20 1.68 8.30 -13.08 -0.11 1.57 16 3 N -0.46 -4.90 11.06 -7.65 -0.08 -4.99 16 4 C -0.07 -0.78 6.99 -83.02 -0.58 -1.36 16 5 C 0.60 7.17 7.79 -12.52 -0.10 7.07 16 6 O -0.54 -7.51 16.53 5.26 0.09 -7.42 16 7 N -0.70 -7.30 4.45 -54.89 -0.24 -7.54 16 8 C 0.14 1.37 2.47 -67.94 -0.17 1.21 16 9 H 0.10 1.08 5.73 -51.93 -0.30 0.78 16 10 C -0.16 -1.41 9.50 37.15 0.35 -1.06 16 11 C -0.13 -1.30 4.28 -26.73 -0.11 -1.41 16 12 C 0.08 1.05 2.63 -67.72 -0.18 0.87 16 13 H 0.04 0.53 7.31 -51.93 -0.38 0.15 16 14 C -0.14 -1.79 9.16 37.15 0.34 -1.45 16 15 N -0.66 -10.81 5.93 -108.00 -0.64 -11.46 16 16 C 0.05 0.94 5.97 -4.98 -0.03 0.91 16 17 C 0.44 10.63 7.82 -10.98 -0.09 10.54 16 18 O -0.58 -16.03 15.78 5.54 0.09 -15.94 16 19 N -0.56 -14.55 5.29 -10.96 -0.06 -14.61 16 20 C -0.30 -8.42 9.68 -14.93 -0.14 -8.57 16 21 H 0.10 3.03 7.16 -52.48 -0.38 2.65 16 22 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 23 N -0.90 -24.78 13.05 55.50 0.72 -24.05 16 24 Si 0.93 21.21 29.55 -169.99 -5.02 16.18 16 25 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 C 0.01 0.09 11.95 29.96 0.36 0.45 16 29 O -0.20 -1.67 10.73 6.50 0.07 -1.60 16 30 H 0.09 0.21 8.14 -51.93 -0.42 -0.21 16 31 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 32 H 0.10 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.41 4.04 8.35 -40.82 -0.34 3.70 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 37 H 0.09 0.92 8.14 -51.92 -0.42 0.50 16 38 H 0.07 0.67 8.02 -51.93 -0.42 0.25 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 40 H 0.05 0.62 6.47 -51.93 -0.34 0.29 16 41 H 0.05 0.74 7.35 -51.93 -0.38 0.35 16 42 H 0.35 5.76 8.00 -39.29 -0.31 5.45 16 43 H 0.04 0.70 8.06 -51.93 -0.42 0.28 16 44 H 0.08 1.47 7.32 -51.93 -0.38 1.09 16 45 H 0.39 9.68 7.90 -40.82 -0.32 9.36 16 46 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 47 H 0.23 1.30 8.06 -52.49 -0.42 0.88 16 LS Contribution 399.38 15.07 6.02 6.02 Total: -1.00 -34.60 399.38 -6.14 -40.74 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: -6.90 Total: 15.28 kcal Atomic # 6 Polarization: 9.57 SS G_CDS: -0.17 Total: 9.39 kcal Atomic # 7 Polarization: -62.34 SS G_CDS: -0.30 Total: -62.65 kcal Atomic # 8 Polarization: -25.21 SS G_CDS: 0.24 Total: -24.97 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.60 -6.14 -40.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001134168753.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.562 kcal (2) G-P(sol) polarization free energy of solvation -34.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.741 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.303 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds