Wall clock time and date at job start Tue Mar 31 2020 21:26:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33691 * 126.26837 * 2 1 4 4 C 1.30621 * 108.99649 * 180.12032 * 3 2 1 5 5 C 1.50697 * 125.42273 * 179.87131 * 4 3 2 6 6 C 1.52997 * 109.47466 * 59.69249 * 5 4 3 7 7 C 1.53006 * 109.47239 * 299.68961 * 5 4 3 8 8 O 1.33662 * 109.15269 * 359.60379 * 4 3 2 9 9 C 1.35349 * 107.68084 * 0.24463 * 8 4 3 10 10 C 1.46723 * 126.63892 * 179.97438 * 9 8 4 11 11 O 1.21683 * 120.00018 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00458 * 0.02562 * 10 9 8 13 13 C 1.46498 * 120.00502 * 179.97438 * 12 10 9 14 14 C 1.52991 * 109.47413 * 179.97438 * 13 12 10 15 15 N 1.46904 * 109.47160 * 180.02562 * 14 13 12 16 16 C 1.46903 * 110.99816 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.46943 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00336 * 0.02562 * 17 16 15 19 19 N 1.34781 * 120.00219 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00042 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00474 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99739 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99820 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99717 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47287 * 60.00187 * 24 22 20 26 26 H 1.48500 * 109.46723 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47006 * 299.99617 * 24 22 20 28 28 H 1.08997 * 109.47068 * 270.31352 * 1 2 3 29 29 H 1.08990 * 109.47399 * 30.32169 * 1 2 3 30 30 H 1.09001 * 109.46554 * 150.32303 * 1 2 3 31 31 H 1.08998 * 109.46862 * 179.69804 * 5 4 3 32 32 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 33 33 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 34 34 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47050 * 300.00336 * 7 5 4 36 36 H 1.09001 * 109.47002 * 60.00070 * 7 5 4 37 37 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 38 38 H 0.97005 * 119.99430 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.47030 * 300.00218 * 13 12 10 40 40 H 1.09002 * 109.46498 * 60.00099 * 13 12 10 41 41 H 1.09002 * 109.47349 * 300.00205 * 14 13 12 42 42 H 1.09002 * 109.47060 * 60.00624 * 14 13 12 43 43 H 1.00895 * 110.99760 * 56.05191 * 15 14 13 44 44 H 1.09001 * 109.46851 * 299.99631 * 16 15 14 45 45 H 1.09005 * 109.47058 * 60.00137 * 16 15 14 46 46 H 0.97000 * 119.99573 * 359.97438 * 19 17 16 47 47 H 0.97001 * 119.99474 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5452 0.6901 -0.0026 5 6 4.7439 1.6034 -0.0062 6 6 4.7114 2.4926 1.2383 7 6 4.7136 2.4797 -1.2601 8 8 3.5891 -0.6458 0.0044 9 6 2.3137 -1.0990 0.0061 10 6 1.8829 -2.5015 0.0127 11 8 0.6969 -2.7737 0.0131 12 7 2.8007 -3.4885 0.0183 13 6 2.3705 -4.8889 0.0254 14 6 3.5995 -5.8000 0.0301 15 7 3.1681 -7.2042 0.0366 16 6 4.3245 -8.1102 0.0419 17 6 3.8437 -9.5384 0.0479 18 8 2.6547 -9.7780 0.0473 19 7 4.7348 -10.5495 0.0539 20 6 4.2974 -11.8487 0.0598 21 1 3.2387 -12.0621 0.0593 22 6 5.2162 -12.8911 0.0655 23 7 6.5044 -12.6315 0.0646 24 14 4.6201 -14.6615 0.0729 25 1 3.8000 -14.9128 -1.1393 26 1 5.7890 -15.5773 0.0776 27 1 3.7976 -14.9017 1.2857 28 1 -0.3633 0.0056 1.0276 29 1 -0.3633 0.8870 -0.5188 30 1 -0.3632 -0.8929 -0.5088 31 1 5.6556 1.0062 -0.0024 32 1 4.7330 1.8684 2.1316 33 1 3.7995 3.0899 1.2344 34 1 5.5786 3.1530 1.2359 35 1 4.7368 1.8462 -2.1468 36 1 3.8017 3.0769 -1.2641 37 1 5.5808 3.1399 -1.2630 38 1 3.7461 -3.2716 0.0183 39 1 1.7722 -5.0807 0.9161 40 1 1.7731 -5.0899 -0.8639 41 1 4.1975 -5.6081 -0.8608 42 1 4.1973 -5.5991 0.9192 43 1 2.5593 -7.3991 -0.7440 44 1 4.9280 -7.9341 -0.8486 45 1 4.9268 -7.9254 0.9315 46 1 5.6857 -10.3579 0.0540 47 1 7.1458 -13.3592 0.0689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135014321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:31 Heat of formation + Delta-G solvation = -62.622085 kcal Electronic energy + Delta-G solvation = -27688.183626 eV Core-core repulsion = 23486.277005 eV Total energy + Delta-G solvation = -4201.906621 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -43.87578 -39.86540 -38.34782 -36.50507 -36.42567 -35.56968 -34.42126 -33.77563 -31.48486 -31.25108 -29.78469 -28.02171 -27.79863 -26.09354 -24.74579 -23.87463 -22.49888 -21.95192 -21.10082 -20.79148 -19.31996 -18.52171 -17.91476 -17.38155 -16.74701 -16.38370 -16.25196 -15.89208 -15.20156 -15.08867 -14.94184 -14.60676 -14.49652 -14.02718 -13.98081 -13.70372 -13.57488 -13.52182 -13.40387 -13.18283 -12.78383 -12.69522 -12.47453 -12.30939 -11.97340 -11.92497 -11.71000 -11.56618 -11.50960 -11.48419 -11.33397 -11.17590 -11.02715 -10.48669 -10.45206 -10.23068 -9.55063 -9.52031 -9.11978 -8.53809 -8.16985 -7.98730 -6.43733 -3.84651 0.41470 1.91435 1.98723 2.71199 2.74347 3.19338 3.25125 3.29713 3.37486 3.87526 4.07566 4.15786 4.24859 4.35559 4.38125 4.42650 4.56467 4.78453 4.91335 5.01181 5.05211 5.05279 5.13792 5.21228 5.21701 5.23574 5.31822 5.32822 5.34659 5.50180 5.53444 5.61693 5.68036 5.68716 5.73069 5.82249 5.90447 5.94243 6.03580 6.21841 6.94084 7.06273 7.23460 7.52213 7.53417 7.69775 8.03637 8.58664 9.15614 9.51386 10.02729 10.73846 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.001507 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.639900 B =18573.346961 C =19533.980384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.085 3.915 3 N -0.483 5.483 4 C 0.227 3.773 5 C -0.001 4.001 6 C -0.145 4.145 7 C -0.145 4.145 8 O -0.189 6.189 9 C -0.122 4.122 10 C 0.610 3.390 11 O -0.509 6.509 12 N -0.716 5.716 13 C 0.120 3.880 14 C 0.049 3.951 15 N -0.665 5.665 16 C 0.052 3.948 17 C 0.439 3.561 18 O -0.582 6.582 19 N -0.562 5.562 20 C -0.301 4.301 21 H 0.103 0.897 22 C 0.023 3.977 23 N -0.902 5.902 24 Si 0.932 3.068 25 H -0.274 1.274 26 H -0.284 1.284 27 H -0.273 1.273 28 H 0.083 0.917 29 H 0.077 0.923 30 H 0.096 0.904 31 H 0.101 0.899 32 H 0.060 0.940 33 H 0.071 0.929 34 H 0.075 0.925 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.075 0.925 38 H 0.404 0.596 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.034 0.966 42 H 0.078 0.922 43 H 0.353 0.647 44 H 0.045 0.955 45 H 0.088 0.912 46 H 0.392 0.608 47 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.482 31.865 -1.086 31.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.039 4.039 3 N -0.213 5.213 4 C 0.021 3.979 5 C -0.020 4.020 6 C -0.202 4.202 7 C -0.202 4.202 8 O -0.076 6.076 9 C -0.177 4.177 10 C 0.395 3.605 11 O -0.387 6.387 12 N -0.367 5.367 13 C -0.004 4.004 14 C -0.081 4.081 15 N -0.298 5.298 16 C -0.080 4.080 17 C 0.225 3.775 18 O -0.466 6.466 19 N -0.199 5.199 20 C -0.431 4.431 21 H 0.121 0.879 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.759 3.241 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.198 1.198 28 H 0.101 0.899 29 H 0.096 0.904 30 H 0.115 0.885 31 H 0.120 0.880 32 H 0.079 0.921 33 H 0.090 0.910 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.090 0.910 37 H 0.094 0.906 38 H 0.239 0.761 39 H 0.104 0.896 40 H 0.092 0.908 41 H 0.052 0.948 42 H 0.097 0.903 43 H 0.173 0.827 44 H 0.063 0.937 45 H 0.106 0.894 46 H 0.225 0.775 47 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -1.220 31.875 -0.405 31.901 hybrid contribution 1.587 -1.363 -0.866 2.264 sum 0.367 30.512 -1.271 30.540 Atomic orbital electron populations 1.20413 0.85148 1.04481 1.03859 1.22104 0.98405 0.86330 0.97102 1.70297 1.00268 1.30948 1.19745 1.26613 0.95730 0.79085 0.96450 1.19805 0.90350 0.93161 0.98697 1.21860 1.03668 0.99366 0.95347 1.21859 1.03667 0.99472 0.95235 1.84442 1.29757 1.23808 1.69566 1.22870 0.81350 0.96214 1.17290 1.16237 0.85755 0.81223 0.77275 1.90890 1.15620 1.81778 1.50374 1.45795 1.09863 1.06541 1.74511 1.21395 0.97277 0.77750 1.03951 1.22074 0.95703 0.89168 1.01190 1.59925 1.17931 1.00256 1.51695 1.21673 0.92325 0.92654 1.01371 1.19760 0.87114 0.85955 0.84708 1.90534 1.16223 1.84493 1.55377 1.41845 1.08359 1.05412 1.64282 1.19671 0.94675 0.80943 1.47770 0.87912 1.25269 0.94897 1.00494 0.97221 1.69605 1.00572 1.33675 1.50455 0.85901 0.77870 0.81248 0.79111 1.19902 1.20973 1.19846 0.89856 0.90404 0.88529 0.88033 0.92081 0.91004 0.90624 0.92098 0.91012 0.90624 0.76107 0.89588 0.90774 0.94797 0.90336 0.82736 0.93677 0.89429 0.77452 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.75 9.87 36.01 0.36 -0.39 16 2 C 0.08 0.93 7.16 -82.47 -0.59 0.34 16 3 N -0.48 -5.03 11.26 -7.07 -0.08 -5.11 16 4 C 0.23 1.99 6.82 -12.79 -0.09 1.91 16 5 C 0.00 0.00 3.39 -91.77 -0.31 -0.31 16 6 C -0.14 -0.62 9.17 37.16 0.34 -0.27 16 7 C -0.14 -0.61 9.18 37.16 0.34 -0.27 16 8 O -0.19 -1.84 10.57 4.41 0.05 -1.79 16 9 C -0.12 -1.36 7.18 -36.84 -0.26 -1.62 16 10 C 0.61 7.24 7.79 -12.83 -0.10 7.14 16 11 O -0.51 -7.30 14.79 5.20 0.08 -7.22 16 12 N -0.72 -7.10 5.55 -61.61 -0.34 -7.44 16 13 C 0.12 1.32 5.93 -4.05 -0.02 1.29 16 14 C 0.05 0.54 5.80 -3.83 -0.02 0.52 16 15 N -0.66 -10.28 6.13 -115.06 -0.70 -10.99 16 16 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 17 C 0.44 10.26 7.82 -10.99 -0.09 10.18 16 18 O -0.58 -15.77 15.78 5.55 0.09 -15.68 16 19 N -0.56 -14.14 5.29 -10.96 -0.06 -14.19 16 20 C -0.30 -8.38 9.68 -14.93 -0.14 -8.52 16 21 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 22 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 23 N -0.90 -24.35 13.05 55.50 0.72 -23.62 16 24 Si 0.93 20.98 29.55 -169.99 -5.02 15.96 16 25 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 28 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.10 0.97 6.47 -51.93 -0.34 0.63 16 31 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.38 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 36 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 37 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 38 H 0.40 3.15 8.27 -40.82 -0.34 2.81 16 39 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 42 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.35 5.64 8.43 -39.29 -0.33 5.31 16 44 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.39 9.36 7.90 -40.82 -0.32 9.04 16 47 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 403.41 15.07 6.08 6.08 Total: -1.00 -33.71 403.41 -7.09 -40.80 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: -7.18 Total: 11.86 kcal Atomic # 6 Polarization: 12.08 SS G_CDS: -0.72 Total: 11.36 kcal Atomic # 7 Polarization: -60.90 SS G_CDS: -0.46 Total: -61.36 kcal Atomic # 8 Polarization: -24.91 SS G_CDS: 0.21 Total: -24.69 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -5.02 Total: 15.96 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -33.71 -7.09 -40.80 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135014321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.823 kcal (2) G-P(sol) polarization free energy of solvation -33.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.531 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.622 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds