Wall clock time and date at job start Tue Mar 31 2020 21:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.33691 * 126.26837 * 2 1 4 4 C 1.30621 * 108.99649 * 180.12032 * 3 2 1 5 5 C 1.50697 * 125.42273 * 179.87131 * 4 3 2 6 6 C 1.52997 * 109.47466 * 59.69249 * 5 4 3 7 7 C 1.53006 * 109.47239 * 299.68961 * 5 4 3 8 8 O 1.33662 * 109.15269 * 359.60379 * 4 3 2 9 9 C 1.35349 * 107.68084 * 0.24463 * 8 4 3 10 10 C 1.46723 * 126.63892 * 179.97438 * 9 8 4 11 11 O 1.21683 * 120.00018 * 180.02562 * 10 9 8 12 12 N 1.34777 * 120.00458 * 0.02562 * 10 9 8 13 13 C 1.46498 * 120.00502 * 179.97438 * 12 10 9 14 14 C 1.52991 * 109.47413 * 179.97438 * 13 12 10 15 15 N 1.46904 * 109.47160 * 180.02562 * 14 13 12 16 16 C 1.46903 * 110.99816 * 180.02562 * 15 14 13 17 17 C 1.50695 * 109.46943 * 180.02562 * 16 15 14 18 18 O 1.21292 * 120.00336 * 0.02562 * 17 16 15 19 19 N 1.34781 * 120.00219 * 180.02562 * 17 16 15 20 20 C 1.37092 * 120.00042 * 179.97438 * 19 17 16 21 21 H 1.07998 * 120.00474 * 0.02562 * 20 19 17 22 22 C 1.38956 * 119.99739 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99820 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 119.99717 * 180.02562 * 22 20 19 25 25 H 1.48494 * 109.47287 * 60.00187 * 24 22 20 26 26 H 1.48500 * 109.46723 * 179.97438 * 24 22 20 27 27 H 1.48493 * 109.47006 * 299.99617 * 24 22 20 28 28 H 1.08997 * 109.47068 * 270.31352 * 1 2 3 29 29 H 1.08990 * 109.47399 * 30.32169 * 1 2 3 30 30 H 1.09001 * 109.46554 * 150.32303 * 1 2 3 31 31 H 1.08998 * 109.46862 * 179.69804 * 5 4 3 32 32 H 1.09002 * 109.47153 * 59.99773 * 6 5 4 33 33 H 1.09001 * 109.46832 * 299.99964 * 6 5 4 34 34 H 1.09004 * 109.47261 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.47050 * 300.00336 * 7 5 4 36 36 H 1.09001 * 109.47002 * 60.00070 * 7 5 4 37 37 H 1.08993 * 109.46955 * 180.02562 * 7 5 4 38 38 H 0.97005 * 119.99430 * 0.02562 * 12 10 9 39 39 H 1.09002 * 109.47030 * 300.00218 * 13 12 10 40 40 H 1.09002 * 109.46498 * 60.00099 * 13 12 10 41 41 H 1.09002 * 109.47349 * 300.00205 * 14 13 12 42 42 H 1.09002 * 109.47060 * 60.00624 * 14 13 12 43 43 H 1.00895 * 110.99760 * 56.05191 * 15 14 13 44 44 H 1.09001 * 109.46851 * 299.99631 * 16 15 14 45 45 H 1.09005 * 109.47058 * 60.00137 * 16 15 14 46 46 H 0.97000 * 119.99573 * 359.97438 * 19 17 16 47 47 H 0.97001 * 119.99474 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2979 1.0779 0.0000 4 6 3.5452 0.6901 -0.0026 5 6 4.7439 1.6034 -0.0062 6 6 4.7114 2.4926 1.2383 7 6 4.7136 2.4797 -1.2601 8 8 3.5891 -0.6458 0.0044 9 6 2.3137 -1.0990 0.0061 10 6 1.8829 -2.5015 0.0127 11 8 0.6969 -2.7737 0.0131 12 7 2.8007 -3.4885 0.0183 13 6 2.3705 -4.8889 0.0254 14 6 3.5995 -5.8000 0.0301 15 7 3.1681 -7.2042 0.0366 16 6 4.3245 -8.1102 0.0419 17 6 3.8437 -9.5384 0.0479 18 8 2.6547 -9.7780 0.0473 19 7 4.7348 -10.5495 0.0539 20 6 4.2974 -11.8487 0.0598 21 1 3.2387 -12.0621 0.0593 22 6 5.2162 -12.8911 0.0655 23 7 6.5044 -12.6315 0.0646 24 14 4.6201 -14.6615 0.0729 25 1 3.8000 -14.9128 -1.1393 26 1 5.7890 -15.5773 0.0776 27 1 3.7976 -14.9017 1.2857 28 1 -0.3633 0.0056 1.0276 29 1 -0.3633 0.8870 -0.5188 30 1 -0.3632 -0.8929 -0.5088 31 1 5.6556 1.0062 -0.0024 32 1 4.7330 1.8684 2.1316 33 1 3.7995 3.0899 1.2344 34 1 5.5786 3.1530 1.2359 35 1 4.7368 1.8462 -2.1468 36 1 3.8017 3.0769 -1.2641 37 1 5.5808 3.1399 -1.2630 38 1 3.7461 -3.2716 0.0183 39 1 1.7722 -5.0807 0.9161 40 1 1.7731 -5.0899 -0.8639 41 1 4.1975 -5.6081 -0.8608 42 1 4.1973 -5.5991 0.9192 43 1 2.5593 -7.3991 -0.7440 44 1 4.9280 -7.9341 -0.8486 45 1 4.9268 -7.9254 0.9315 46 1 5.6857 -10.3579 0.0540 47 1 7.1458 -13.3592 0.0689 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135014321.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:26:30 Heat of formation + Delta-G solvation = -91.075601 kcal Electronic energy + Delta-G solvation = -27689.417463 eV Core-core repulsion = 23486.277005 eV Total energy + Delta-G solvation = -4203.140458 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.62211 -40.79773 -40.14961 -37.61518 -36.94296 -36.34063 -35.97095 -35.26044 -33.27334 -32.22472 -30.85345 -28.95300 -28.11576 -27.57149 -25.85258 -25.08318 -23.42801 -22.81039 -21.87490 -21.40818 -21.10486 -19.92877 -19.38400 -18.14984 -17.80735 -17.40851 -17.23632 -17.20325 -16.56866 -16.22926 -15.97728 -15.72078 -15.51467 -15.30974 -15.12921 -14.88934 -14.50587 -14.34895 -14.14125 -14.10202 -13.99254 -13.52339 -13.38575 -13.31900 -13.09651 -12.94231 -12.73545 -12.63411 -12.47794 -12.42856 -12.33067 -12.22025 -12.12241 -12.00374 -11.83145 -11.50546 -11.39411 -10.45706 -10.37083 -10.01914 -9.90429 -9.40737 -8.46905 -5.95617 -0.38002 1.16336 1.22944 1.40125 1.42331 1.52983 1.85679 1.86740 2.05086 2.30087 2.72460 2.99493 3.20498 3.47940 3.54529 3.59317 3.81948 3.91248 4.02008 4.06109 4.10603 4.30811 4.33483 4.41098 4.43192 4.49417 4.59843 4.63119 4.73171 4.77879 4.78564 4.83622 4.88437 4.89398 4.91081 5.05797 5.10300 5.21347 5.30310 5.37546 5.40808 5.81938 6.05245 6.15371 6.30963 6.47224 6.59902 6.84010 7.12415 7.55883 8.11482 8.70077 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.023933 B = 0.001507 C = 0.001433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1169.639900 B =18573.346961 C =19533.980384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.076 3.924 3 N -0.503 5.503 4 C 0.235 3.765 5 C -0.002 4.002 6 C -0.142 4.142 7 C -0.141 4.141 8 O -0.188 6.188 9 C -0.140 4.140 10 C 0.609 3.391 11 O -0.541 6.541 12 N -0.702 5.702 13 C 0.128 3.872 14 C 0.058 3.942 15 N -0.684 5.684 16 C 0.068 3.932 17 C 0.435 3.565 18 O -0.625 6.625 19 N -0.572 5.572 20 C -0.337 4.337 21 H 0.078 0.922 22 C -0.011 4.011 23 N -0.919 5.919 24 Si 0.992 3.008 25 H -0.272 1.272 26 H -0.270 1.270 27 H -0.273 1.273 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.123 0.877 32 H 0.055 0.945 33 H 0.058 0.942 34 H 0.100 0.900 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.100 0.900 38 H 0.417 0.583 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.057 0.943 42 H 0.093 0.907 43 H 0.347 0.653 44 H 0.073 0.927 45 H 0.109 0.891 46 H 0.397 0.603 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.518 33.132 -1.164 33.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.048 4.048 3 N -0.232 5.232 4 C 0.030 3.970 5 C -0.022 4.022 6 C -0.199 4.199 7 C -0.199 4.199 8 O -0.075 6.075 9 C -0.195 4.195 10 C 0.395 3.605 11 O -0.421 6.421 12 N -0.354 5.354 13 C 0.004 3.996 14 C -0.072 4.072 15 N -0.317 5.317 16 C -0.064 4.064 17 C 0.222 3.778 18 O -0.511 6.511 19 N -0.209 5.209 20 C -0.467 4.467 21 H 0.096 0.904 22 C -0.211 4.211 23 N -0.559 5.559 24 Si 0.816 3.184 25 H -0.197 1.197 26 H -0.194 1.194 27 H -0.198 1.198 28 H 0.107 0.893 29 H 0.109 0.891 30 H 0.104 0.896 31 H 0.141 0.859 32 H 0.074 0.926 33 H 0.077 0.923 34 H 0.119 0.881 35 H 0.074 0.926 36 H 0.077 0.923 37 H 0.119 0.881 38 H 0.254 0.746 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.075 0.925 42 H 0.111 0.889 43 H 0.166 0.834 44 H 0.091 0.909 45 H 0.127 0.873 46 H 0.231 0.769 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.868 33.172 -0.481 33.187 hybrid contribution 0.975 -1.627 -0.839 2.074 sum 1.843 31.546 -1.320 31.627 Atomic orbital electron populations 1.20414 0.84456 1.04516 1.04242 1.22437 0.99204 0.86626 0.96532 1.70333 1.01013 1.30898 1.20981 1.27555 0.96449 0.79025 0.93990 1.20150 0.89523 0.93005 0.99481 1.21861 1.04189 0.99272 0.94592 1.21860 1.04188 0.99382 0.94470 1.84438 1.29014 1.24309 1.69774 1.22668 0.81998 0.95840 1.18973 1.16338 0.85511 0.81778 0.76827 1.90870 1.16903 1.82359 1.51968 1.45619 1.10326 1.05733 1.73677 1.21205 0.97216 0.78308 1.02891 1.22059 0.95734 0.86428 1.02935 1.59885 1.17707 1.02230 1.51886 1.21527 0.92937 0.88350 1.03624 1.20917 0.86339 0.88201 0.82293 1.90503 1.18195 1.85754 1.56686 1.41909 1.08850 1.05168 1.64976 1.19642 0.93971 0.82893 1.50164 0.90374 1.26021 0.94980 1.03915 0.96191 1.69660 1.01167 1.34974 1.50143 0.84996 0.77786 0.76694 0.78911 1.19740 1.19420 1.19821 0.89269 0.89112 0.89627 0.85859 0.92602 0.92296 0.88113 0.92575 0.92298 0.88121 0.74611 0.91258 0.91426 0.92502 0.88868 0.83381 0.90915 0.87301 0.76856 0.91266 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.47 9.87 71.24 0.70 -0.77 16 2 C 0.08 1.67 7.16 41.83 0.30 1.97 16 3 N -0.50 -10.23 11.26 -291.07 -3.28 -13.50 16 4 C 0.24 3.85 6.82 88.29 0.60 4.46 16 5 C 0.00 -0.02 3.39 -11.54 -0.04 -0.06 16 6 C -0.14 -0.91 9.17 71.98 0.66 -0.25 16 7 C -0.14 -0.90 9.18 71.98 0.66 -0.24 16 8 O -0.19 -3.45 10.57 -7.12 -0.08 -3.52 16 9 C -0.14 -3.07 7.18 24.04 0.17 -2.89 16 10 C 0.61 14.43 7.79 86.46 0.67 15.10 16 11 O -0.54 -15.91 14.79 -4.29 -0.06 -15.97 16 12 N -0.70 -13.18 5.55 -467.06 -2.59 -15.77 16 13 C 0.13 2.71 5.93 86.38 0.51 3.22 16 14 C 0.06 1.14 5.80 86.30 0.50 1.64 16 15 N -0.68 -20.22 6.13 -517.93 -3.17 -23.39 16 16 C 0.07 2.17 6.17 85.55 0.53 2.70 16 17 C 0.43 20.34 7.82 87.65 0.69 21.03 16 18 O -0.62 -34.57 15.78 -3.07 -0.05 -34.62 16 19 N -0.57 -28.94 5.29 -306.98 -1.62 -30.56 16 20 C -0.34 -19.09 9.68 84.04 0.81 -18.28 16 21 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 22 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 23 N -0.92 -49.01 13.05 21.67 0.28 -48.72 16 24 Si 0.99 42.74 29.55 68.60 2.03 44.77 16 25 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 26 H -0.27 -10.90 7.11 99.48 0.71 -10.19 16 27 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 28 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.09 1.79 6.47 -2.39 -0.02 1.77 16 31 H 0.12 0.49 8.14 -2.39 -0.02 0.47 16 32 H 0.05 0.43 8.14 -2.39 -0.02 0.41 16 33 H 0.06 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 0.16 8.14 -2.38 -0.02 0.14 16 35 H 0.06 0.42 8.14 -2.39 -0.02 0.40 16 36 H 0.06 0.54 8.14 -2.39 -0.02 0.52 16 37 H 0.10 0.16 8.14 -2.39 -0.02 0.14 16 38 H 0.42 5.67 8.27 -92.70 -0.77 4.91 16 39 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 42 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 43 H 0.35 10.92 8.43 -89.70 -0.76 10.17 16 44 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 45 H 0.11 3.07 8.14 -2.38 -0.02 3.05 16 46 H 0.40 18.90 7.90 -92.71 -0.73 18.16 16 47 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -74.25 403.41 -2.53 -76.78 By element: Atomic # 1 Polarization: 38.24 SS G_CDS: -1.23 Total: 37.01 kcal Atomic # 6 Polarization: 20.27 SS G_CDS: 7.24 Total: 27.51 kcal Atomic # 7 Polarization: -121.57 SS G_CDS: -10.38 Total: -131.95 kcal Atomic # 8 Polarization: -53.93 SS G_CDS: -0.19 Total: -54.11 kcal Atomic # 14 Polarization: 42.74 SS G_CDS: 2.03 Total: 44.77 kcal Total: -74.25 -2.53 -76.78 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135014321.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.296 kcal (2) G-P(sol) polarization free energy of solvation -74.246 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.541 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.534 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.780 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds