Wall clock time and date at job start Tue Mar 31 2020 21:10:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.41264 * 128.07539 * 2 1 4 4 N 1.30132 * 106.58350 * 180.23315 * 3 2 1 5 5 O 1.20884 * 111.98587 * 359.77749 * 4 3 2 6 6 C 1.34641 * 111.46806 * 359.97438 * 5 4 3 7 7 C 1.47509 * 126.94270 * 179.97438 * 6 5 4 8 8 O 1.21589 * 120.00125 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00299 * 0.02562 * 7 6 5 10 10 C 1.46504 * 120.00167 * 180.27593 * 9 7 6 11 11 H 1.08997 * 109.46937 * 325.85281 * 10 9 7 12 12 C 1.52990 * 109.47124 * 85.85574 * 10 9 7 13 13 C 1.53007 * 109.47051 * 205.85685 * 10 9 7 14 14 C 1.53001 * 109.47157 * 64.48607 * 13 10 9 15 15 H 1.09001 * 109.46994 * 305.89882 * 14 13 10 16 16 C 1.52993 * 109.47342 * 65.90321 * 14 13 10 17 17 N 1.46900 * 109.46795 * 185.90471 * 14 13 10 18 18 C 1.46904 * 111.00053 * 155.38235 * 17 14 13 19 19 C 1.50691 * 109.47135 * 179.97438 * 18 17 14 20 20 O 1.21294 * 120.00456 * 359.97438 * 19 18 17 21 21 N 1.34783 * 120.00049 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00231 * 179.97438 * 21 19 18 23 23 H 1.07996 * 119.99638 * 359.97438 * 22 21 19 24 24 C 1.38944 * 119.99975 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99862 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00139 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46863 * 90.00026 * 26 24 22 28 28 H 1.48498 * 109.47352 * 209.99810 * 26 24 22 29 29 H 1.48493 * 109.47368 * 330.00190 * 26 24 22 30 30 H 1.08996 * 109.46976 * 270.13536 * 1 2 3 31 31 H 1.09008 * 109.47002 * 30.12950 * 1 2 3 32 32 H 1.08997 * 109.47131 * 150.13022 * 1 2 3 33 33 H 1.07991 * 126.70870 * 359.97438 * 3 2 1 34 34 H 0.97000 * 120.00368 * 0.02562 * 9 7 6 35 35 H 1.08997 * 109.47452 * 60.00023 * 12 10 9 36 36 H 1.09007 * 109.47085 * 180.02562 * 12 10 9 37 37 H 1.09000 * 109.47287 * 299.99734 * 12 10 9 38 38 H 1.09002 * 109.46916 * 184.48743 * 13 10 9 39 39 H 1.08995 * 109.46940 * 304.48499 * 13 10 9 40 40 H 1.09004 * 109.47135 * 180.02562 * 16 14 13 41 41 H 1.09001 * 109.46797 * 299.99781 * 16 14 13 42 42 H 1.09001 * 109.47435 * 59.99830 * 16 14 13 43 43 H 1.00895 * 111.00496 * 31.42339 * 17 14 13 44 44 H 1.08999 * 109.46714 * 299.99816 * 18 17 14 45 45 H 1.08994 * 109.47266 * 59.99094 * 18 17 14 46 46 H 0.97000 * 119.99601 * 359.97438 * 21 19 18 47 47 H 0.97001 * 119.99942 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3782 1.1120 0.0000 4 7 3.5890 0.6353 -0.0051 5 8 3.5995 -0.5735 -0.0038 6 6 2.3508 -1.0771 0.0031 7 6 1.9695 -2.5020 0.0061 8 8 0.7952 -2.8171 0.0120 9 7 2.9228 -3.4547 0.0023 10 6 2.5440 -4.8700 -0.0009 11 1 1.6293 -5.0025 0.5769 12 6 2.3095 -5.3319 -1.4404 13 6 3.6671 -5.6999 0.6245 14 6 3.8262 -5.3153 2.0969 15 1 3.9686 -4.2376 2.1775 16 6 2.5700 -5.7230 2.8691 17 7 4.9934 -6.0069 2.6601 18 6 5.5320 -5.2757 3.8149 19 6 6.7250 -6.0140 4.3649 20 8 7.0904 -7.0478 3.8464 21 7 7.3854 -5.5260 5.4338 22 6 8.4705 -6.1979 5.9345 23 1 8.7958 -7.1184 5.4728 24 6 9.1515 -5.6946 7.0361 25 7 10.1919 -6.3384 7.5157 26 14 8.5892 -4.1021 7.8342 27 1 7.5978 -4.4046 8.8976 28 1 9.7584 -3.4075 8.4306 29 1 7.9644 -3.2282 6.8090 30 1 -0.3633 0.0024 1.0276 31 1 -0.3633 0.8889 -0.5159 32 1 -0.3633 -0.8911 -0.5118 33 1 2.0948 2.1541 -0.0004 34 1 3.8596 -3.2035 -0.0021 35 1 3.2241 -5.1993 -2.0182 36 1 2.0272 -6.3848 -1.4427 37 1 1.5094 -4.7408 -1.8859 38 1 3.4207 -6.7591 0.5502 39 1 4.6000 -5.5058 0.0954 40 1 2.6832 -5.4486 3.9180 41 1 1.7040 -5.2098 2.4511 42 1 2.4276 -6.8007 2.7885 43 1 5.7040 -6.1477 1.9579 44 1 5.8349 -4.2762 3.5028 45 1 4.7655 -5.1988 4.5859 46 1 7.0929 -4.6994 5.8486 47 1 10.6671 -5.9872 8.2850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135845642.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:48 Heat of formation + Delta-G solvation = -11.960782 kcal Electronic energy + Delta-G solvation = -29098.383704 eV Core-core repulsion = 24898.673922 eV Total energy + Delta-G solvation = -4199.709782 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.45404 -40.34653 -38.64358 -37.60550 -35.61869 -35.00180 -33.94171 -33.06918 -31.89248 -31.61530 -30.32832 -28.70538 -27.20952 -26.41752 -24.75306 -23.85501 -23.03470 -21.62483 -21.06185 -20.34109 -19.41491 -19.07759 -18.31532 -18.20858 -16.73861 -16.34946 -16.27269 -15.52877 -15.39757 -15.15552 -14.97317 -14.68215 -14.36493 -14.14261 -13.79468 -13.69885 -13.67214 -13.54764 -13.10753 -13.06496 -12.88784 -12.62488 -12.43005 -12.25584 -12.17450 -11.97833 -11.77735 -11.72134 -11.32087 -11.14738 -10.99891 -10.83212 -10.80189 -10.64145 -10.59348 -9.97579 -9.96104 -9.57088 -9.53511 -8.57840 -8.19986 -8.14845 -6.30999 -3.82357 0.35289 1.62529 2.16715 2.55285 2.79381 3.02719 3.07212 3.15235 3.71154 3.73951 3.93094 4.10407 4.12532 4.27515 4.55529 4.56551 4.60376 4.72896 4.85500 4.92186 5.05622 5.14890 5.17256 5.22119 5.24688 5.28544 5.33142 5.39853 5.52955 5.57678 5.65396 5.72410 5.73781 5.74821 5.83438 5.90753 5.93738 6.00239 6.04703 6.31281 6.87582 7.11879 7.50820 7.57444 7.59335 7.65410 8.14728 8.59968 8.95155 9.42704 9.82930 10.82145 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011782 B = 0.002478 C = 0.002163 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2375.918391 B =11297.706519 C =12941.073618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.118 4.118 3 C -0.016 4.016 4 N -0.339 5.339 5 O 0.118 5.882 6 C -0.097 4.097 7 C 0.609 3.391 8 O -0.510 6.510 9 N -0.708 5.708 10 C 0.141 3.859 11 H 0.100 0.900 12 C -0.164 4.164 13 C -0.130 4.130 14 C 0.082 3.918 15 H 0.041 0.959 16 C -0.143 4.143 17 N -0.663 5.663 18 C 0.048 3.952 19 C 0.450 3.550 20 O -0.565 6.565 21 N -0.591 5.591 22 C -0.305 4.305 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.879 3.121 27 H -0.270 1.270 28 H -0.277 1.277 29 H -0.270 1.270 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.199 0.801 34 H 0.407 0.593 35 H 0.059 0.941 36 H 0.071 0.929 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.072 0.928 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.350 0.650 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.112 13.668 -17.530 30.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.123 4.123 3 C -0.194 4.194 4 N -0.037 5.037 5 O 0.044 5.956 6 C -0.163 4.163 7 C 0.392 3.608 8 O -0.386 6.386 9 N -0.360 5.360 10 C 0.037 3.963 11 H 0.118 0.882 12 C -0.223 4.223 13 C -0.168 4.168 14 C -0.028 4.028 15 H 0.059 0.941 16 C -0.201 4.201 17 N -0.297 5.297 18 C -0.085 4.085 19 C 0.236 3.764 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.521 5.521 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.195 1.195 30 H 0.100 0.900 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.216 0.784 34 H 0.242 0.758 35 H 0.078 0.922 36 H 0.090 0.910 37 H 0.080 0.920 38 H 0.113 0.887 39 H 0.090 0.910 40 H 0.073 0.927 41 H 0.073 0.927 42 H 0.084 0.916 43 H 0.170 0.830 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.681 12.828 -17.333 29.878 hybrid contribution -0.019 2.288 0.464 2.334 sum -20.700 15.115 -16.869 30.684 Atomic orbital electron populations 1.20345 0.86238 1.04184 1.03593 1.21675 0.99102 0.90286 1.01210 1.25045 0.87683 1.02221 1.04446 1.73795 1.23098 0.91140 1.15716 1.84975 1.28103 1.15578 1.66972 1.24045 0.84801 0.96301 1.11137 1.16456 0.85765 0.81451 0.77088 1.90850 1.17108 1.80550 1.50088 1.46060 1.09746 1.06497 1.73654 1.21196 0.99493 0.78235 0.97327 0.88202 1.22187 1.02315 1.02075 0.95677 1.22111 0.98331 1.01375 0.95020 1.21538 0.92438 0.95969 0.92852 0.94060 1.21864 0.95791 1.02276 1.00145 1.60110 1.09829 1.49252 1.10485 1.21746 0.96918 0.94923 0.94867 1.19713 0.85808 0.87613 0.83274 1.90563 1.68621 1.24718 1.60738 1.42219 1.28871 1.23634 1.28336 1.19429 1.03892 1.08305 1.11701 0.86273 1.25036 0.96085 0.98170 0.96878 1.69621 1.18969 1.39116 1.24437 0.86676 0.79185 0.83388 0.80163 1.19592 1.20181 1.19549 0.90014 0.90693 0.89131 0.78411 0.75777 0.92160 0.90958 0.92034 0.88700 0.90952 0.92709 0.92718 0.91640 0.82964 0.93865 0.89576 0.79716 0.91619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.53 9.95 36.01 0.36 -0.17 16 2 C -0.12 -0.95 6.37 -103.98 -0.66 -1.62 16 3 C -0.02 -0.13 12.14 -17.12 -0.21 -0.33 16 4 N -0.34 -3.42 12.04 30.46 0.37 -3.05 16 5 O 0.12 1.14 11.04 15.55 0.17 1.31 16 6 C -0.10 -0.89 7.29 -36.32 -0.26 -1.15 16 7 C 0.61 5.69 7.79 -12.48 -0.10 5.59 16 8 O -0.51 -5.79 14.76 5.29 0.08 -5.72 16 9 N -0.71 -5.39 4.40 -54.86 -0.24 -5.64 16 10 C 0.14 1.06 2.46 -67.93 -0.17 0.89 16 11 H 0.10 0.86 5.80 -51.93 -0.30 0.56 16 12 C -0.16 -1.10 9.49 37.15 0.35 -0.75 16 13 C -0.13 -1.05 4.28 -26.73 -0.11 -1.16 16 14 C 0.08 0.87 2.63 -67.72 -0.18 0.69 16 15 H 0.04 0.43 7.24 -51.93 -0.38 0.06 16 16 C -0.14 -1.52 9.19 37.15 0.34 -1.18 16 17 N -0.66 -9.66 5.93 -108.00 -0.64 -10.30 16 18 C 0.05 0.79 5.97 -4.98 -0.03 0.76 16 19 C 0.45 10.17 7.82 -10.99 -0.09 10.09 16 20 O -0.56 -15.06 15.78 5.55 0.09 -14.97 16 21 N -0.59 -14.12 5.09 -10.97 -0.06 -14.18 16 22 C -0.30 -8.64 10.16 -14.93 -0.15 -8.80 16 23 H 0.12 3.86 7.39 -52.49 -0.39 3.47 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.83 13.96 55.50 0.77 -25.06 16 26 Si 0.88 19.49 27.73 -169.99 -4.71 14.77 16 27 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 28 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 29 H -0.27 -5.46 6.52 56.52 0.37 -5.09 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.30 8.14 -51.92 -0.42 -0.12 16 32 H 0.09 0.67 6.74 -51.93 -0.35 0.32 16 33 H 0.20 0.84 8.06 -52.49 -0.42 0.42 16 34 H 0.41 2.62 8.44 -40.82 -0.34 2.28 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.07 0.54 8.00 -51.93 -0.42 0.12 16 40 H 0.05 0.63 7.43 -51.93 -0.39 0.25 16 41 H 0.05 0.52 6.50 -51.93 -0.34 0.18 16 42 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 43 H 0.35 5.20 7.97 -39.29 -0.31 4.89 16 44 H 0.04 0.62 8.06 -51.93 -0.42 0.21 16 45 H 0.09 1.30 7.41 -51.93 -0.38 0.91 16 46 H 0.37 7.79 5.76 -40.82 -0.24 7.56 16 47 H 0.27 7.39 8.31 -40.82 -0.34 7.05 16 LS Contribution 392.62 15.07 5.92 5.92 Total: -1.00 -34.43 392.62 -6.06 -40.49 By element: Atomic # 1 Polarization: 19.33 SS G_CDS: -6.80 Total: 12.53 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.00 Total: 3.90 kcal Atomic # 7 Polarization: -58.43 SS G_CDS: 0.20 Total: -58.23 kcal Atomic # 8 Polarization: -19.72 SS G_CDS: 0.34 Total: -19.38 kcal Atomic # 14 Polarization: 19.49 SS G_CDS: -4.71 Total: 14.77 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -34.43 -6.06 -40.49 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135845642.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.530 kcal (2) G-P(sol) polarization free energy of solvation -34.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.491 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds