Wall clock time and date at job start Tue Mar 31 2020 21:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41269 * 128.07939 * 2 1 4 4 N 1.30125 * 106.58982 * 180.23236 * 3 2 1 5 5 O 1.20887 * 111.98519 * 359.78428 * 4 3 2 6 6 C 1.34647 * 111.46747 * 359.97438 * 5 4 3 7 7 C 1.47508 * 126.94223 * 179.97438 * 6 5 4 8 8 O 1.21585 * 119.99798 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00343 * 0.03098 * 7 6 5 10 10 C 1.46501 * 120.00112 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47221 * 325.00536 * 10 9 7 12 12 C 1.53009 * 109.46715 * 84.99994 * 10 9 7 13 13 C 1.52999 * 109.47174 * 204.99652 * 10 9 7 14 14 C 1.53006 * 109.46626 * 65.00624 * 13 10 9 15 15 H 1.08992 * 109.47046 * 304.99570 * 14 13 10 16 16 C 1.52999 * 109.46811 * 184.99727 * 14 13 10 17 17 N 1.46897 * 109.47346 * 65.00011 * 14 13 10 18 18 C 1.46898 * 111.00134 * 205.00231 * 17 14 13 19 19 C 1.50700 * 109.47132 * 179.97438 * 18 17 14 20 20 O 1.21288 * 120.00123 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99935 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00096 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99533 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99884 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99800 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99776 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46957 * 59.99950 * 26 24 22 28 28 H 1.48497 * 109.47083 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47146 * 299.99720 * 26 24 22 30 30 H 1.08994 * 109.47321 * 270.13280 * 1 2 3 31 31 H 1.09006 * 109.46831 * 30.12846 * 1 2 3 32 32 H 1.09004 * 109.47034 * 150.12762 * 1 2 3 33 33 H 1.07999 * 126.70000 * 359.97438 * 3 2 1 34 34 H 0.97002 * 119.99909 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47112 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.46851 * 300.00329 * 12 10 9 37 37 H 1.09001 * 109.46642 * 60.00008 * 12 10 9 38 38 H 1.08993 * 109.47839 * 305.00693 * 13 10 9 39 39 H 1.09000 * 109.47160 * 185.00255 * 13 10 9 40 40 H 1.09009 * 109.47170 * 300.00068 * 16 14 13 41 41 H 1.09001 * 109.47273 * 59.99848 * 16 14 13 42 42 H 1.09002 * 109.46911 * 179.97438 * 16 14 13 43 43 H 1.00906 * 110.99744 * 328.95423 * 17 14 13 44 44 H 1.09001 * 109.46587 * 299.99529 * 18 17 14 45 45 H 1.08991 * 109.47405 * 59.99396 * 18 17 14 46 46 H 0.96996 * 119.99731 * 0.02562 * 21 19 18 47 47 H 0.97003 * 119.99357 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1120 0.0000 4 7 3.5891 0.6353 -0.0051 5 8 3.5995 -0.5735 -0.0039 6 6 2.3508 -1.0771 0.0029 7 6 1.9695 -2.5021 0.0057 8 8 0.7952 -2.8171 0.0115 9 7 2.9228 -3.4548 0.0019 10 6 2.5441 -4.8700 0.0053 11 1 1.6400 -5.0027 0.5993 12 6 2.2837 -5.3316 -1.4300 13 6 3.6783 -5.7000 0.6101 14 6 3.8553 -5.3249 2.0829 15 1 4.0108 -4.2495 2.1677 16 6 5.0678 -6.0622 2.6547 17 7 2.6515 -5.7064 2.8335 18 6 2.5021 -4.8845 4.0418 19 6 1.2590 -5.3034 4.7837 20 8 0.5655 -6.1982 4.3483 21 7 0.9179 -4.6838 5.9309 22 6 -0.2133 -5.0645 6.6056 23 1 -0.8307 -5.8613 6.2179 24 6 -0.5652 -4.4252 7.7880 25 7 0.1859 -3.4554 8.2594 26 14 -2.1060 -4.9445 8.7076 27 1 -1.9946 -6.3745 9.0922 28 1 -2.2567 -4.1141 9.9294 29 1 -3.2912 -4.7580 7.8325 30 1 -0.3634 0.0024 1.0276 31 1 -0.3633 0.8889 -0.5159 32 1 -0.3633 -0.8912 -0.5119 33 1 2.0947 2.1541 -0.0004 34 1 3.8597 -3.2034 -0.0030 35 1 2.0024 -6.3846 -1.4277 36 1 1.4758 -4.7402 -1.8609 37 1 3.1880 -5.1988 -2.0240 38 1 4.6035 -5.4989 0.0703 39 1 3.4348 -6.7595 0.5317 40 1 4.9123 -7.1378 2.5698 41 1 5.9610 -5.7792 2.0977 42 1 5.1942 -5.7947 3.7038 43 1 1.8290 -5.6473 2.2520 44 1 3.3722 -5.0211 4.6839 45 1 2.4200 -3.8350 3.7596 46 1 1.4723 -3.9679 6.2788 47 1 -0.0596 -3.0095 9.0850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135845643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:52 Heat of formation + Delta-G solvation = -17.943112 kcal Electronic energy + Delta-G solvation = -29817.966873 eV Core-core repulsion = 25617.997677 eV Total energy + Delta-G solvation = -4199.969195 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -45.30030 -40.19580 -38.46426 -37.43138 -35.40052 -34.79296 -33.84966 -32.87464 -31.65006 -31.15144 -30.46179 -28.51660 -27.10972 -26.16450 -24.56096 -23.89309 -22.92704 -21.53388 -20.91399 -20.22153 -19.27539 -18.90687 -18.06150 -17.85139 -16.61135 -16.30825 -16.09116 -15.43323 -15.14478 -15.12433 -14.84131 -14.43007 -14.11195 -13.92936 -13.83628 -13.61045 -13.48071 -13.44391 -13.01690 -12.90871 -12.67658 -12.47056 -12.29815 -12.11472 -11.83050 -11.76209 -11.56483 -11.51682 -11.24657 -11.06381 -10.94231 -10.67617 -10.60670 -10.45692 -10.41358 -10.17516 -9.77860 -9.46049 -9.39638 -8.39818 -8.03147 -7.91735 -6.37850 -3.78433 0.51949 1.77640 2.31360 2.74358 2.94137 3.23038 3.28106 3.32896 3.86390 3.95433 4.12473 4.26480 4.35742 4.39792 4.51479 4.67998 4.73021 4.93642 5.03235 5.12151 5.20655 5.28666 5.35738 5.37699 5.40341 5.44228 5.47155 5.59061 5.60279 5.71173 5.76221 5.82819 5.88485 5.96461 6.00319 6.01907 6.08219 6.17380 6.28758 6.38482 7.03146 7.27737 7.58705 7.67200 7.70596 7.81125 8.10207 8.65544 9.21788 9.58500 10.10265 10.79965 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009038 B = 0.003232 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.321617 B = 8662.408747 C =10397.145327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.089 4.089 2 C -0.115 4.115 3 C -0.015 4.015 4 N -0.342 5.342 5 O 0.114 5.886 6 C -0.096 4.096 7 C 0.606 3.394 8 O -0.501 6.501 9 N -0.710 5.710 10 C 0.134 3.866 11 H 0.097 0.903 12 C -0.162 4.162 13 C -0.129 4.129 14 C 0.080 3.920 15 H 0.042 0.958 16 C -0.140 4.140 17 N -0.662 5.662 18 C 0.052 3.948 19 C 0.442 3.558 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.299 4.299 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.085 0.915 31 H 0.074 0.926 32 H 0.090 0.910 33 H 0.199 0.801 34 H 0.405 0.595 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.058 0.942 38 H 0.077 0.923 39 H 0.094 0.906 40 H 0.063 0.937 41 H 0.052 0.948 42 H 0.055 0.945 43 H 0.348 0.652 44 H 0.085 0.915 45 H 0.039 0.961 46 H 0.391 0.609 47 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.568 6.084 -19.557 22.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.119 4.119 3 C -0.192 4.192 4 N -0.042 5.042 5 O 0.041 5.959 6 C -0.162 4.162 7 C 0.389 3.611 8 O -0.375 6.375 9 N -0.362 5.362 10 C 0.030 3.970 11 H 0.115 0.885 12 C -0.220 4.220 13 C -0.167 4.167 14 C -0.030 4.030 15 H 0.060 0.940 16 C -0.198 4.198 17 N -0.297 5.297 18 C -0.081 4.081 19 C 0.227 3.773 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.103 0.897 31 H 0.093 0.907 32 H 0.109 0.891 33 H 0.216 0.784 34 H 0.240 0.760 35 H 0.091 0.909 36 H 0.080 0.920 37 H 0.077 0.923 38 H 0.095 0.905 39 H 0.113 0.887 40 H 0.082 0.918 41 H 0.071 0.929 42 H 0.074 0.926 43 H 0.170 0.830 44 H 0.103 0.897 45 H 0.057 0.943 46 H 0.225 0.775 47 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 9.721 5.394 -19.342 22.310 hybrid contribution -0.889 1.377 0.508 1.717 sum 8.831 6.771 -18.834 21.876 Atomic orbital electron populations 1.20375 0.86157 1.04118 1.03957 1.21700 0.99192 0.90270 1.00784 1.25028 0.87689 1.02204 1.04308 1.73746 1.23122 0.91180 1.16104 1.84937 1.28167 1.15572 1.67223 1.24035 0.84699 0.96282 1.11173 1.16493 0.85847 0.81489 0.77279 1.90899 1.17063 1.80393 1.49185 1.46000 1.09555 1.06367 1.74309 1.21232 0.99584 0.78473 0.97691 0.88475 1.22159 1.02113 1.02176 0.95545 1.22122 0.98062 1.01346 0.95191 1.21558 0.92188 0.97439 0.91830 0.94035 1.21794 0.95678 1.01368 1.00928 1.60221 1.05212 1.56397 1.07903 1.21690 0.98709 0.94535 0.93133 1.19807 0.87821 0.86034 0.83621 1.90517 1.54659 1.32748 1.68678 1.41850 1.24348 1.33404 1.20481 1.19659 1.01383 1.17998 1.03777 0.87983 1.25248 0.99311 0.96089 0.97266 1.69611 1.38844 1.23580 1.22414 0.85925 0.81325 0.78542 0.78477 1.19887 1.21005 1.19906 0.89681 0.90711 0.89097 0.78413 0.75975 0.90933 0.91959 0.92341 0.90483 0.88743 0.91814 0.92937 0.92567 0.83042 0.89699 0.94289 0.77544 0.91884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.84 9.95 36.01 0.36 -0.48 16 2 C -0.11 -1.21 6.37 -103.98 -0.66 -1.88 16 3 C -0.01 -0.14 12.14 -17.12 -0.21 -0.35 16 4 N -0.34 -3.85 12.04 30.46 0.37 -3.48 16 5 O 0.11 1.25 11.04 15.54 0.17 1.42 16 6 C -0.10 -1.09 7.29 -36.32 -0.26 -1.35 16 7 C 0.61 7.32 7.78 -12.48 -0.10 7.22 16 8 O -0.50 -7.58 14.78 5.29 0.08 -7.50 16 9 N -0.71 -6.73 4.44 -54.86 -0.24 -6.97 16 10 C 0.13 1.31 2.48 -67.93 -0.17 1.14 16 11 H 0.10 1.26 5.72 -51.93 -0.30 0.96 16 12 C -0.16 -1.36 9.48 37.16 0.35 -1.01 16 13 C -0.13 -1.12 4.35 -26.73 -0.12 -1.24 16 14 C 0.08 0.92 2.59 -67.71 -0.18 0.74 16 15 H 0.04 0.47 7.28 -51.93 -0.38 0.10 16 16 C -0.14 -1.49 9.41 37.16 0.35 -1.15 16 17 N -0.66 -10.61 5.93 -108.00 -0.64 -11.25 16 18 C 0.05 0.95 5.97 -4.98 -0.03 0.92 16 19 C 0.44 10.75 7.82 -10.98 -0.09 10.67 16 20 O -0.58 -16.16 15.78 5.55 0.09 -16.07 16 21 N -0.56 -14.71 5.29 -10.96 -0.06 -14.77 16 22 C -0.30 -8.52 9.68 -14.93 -0.14 -8.66 16 23 H 0.10 3.04 7.16 -52.49 -0.38 2.67 16 24 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 25 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 26 Si 0.93 21.43 29.55 -169.99 -5.02 16.41 16 27 H -0.27 -6.25 7.11 56.52 0.40 -5.85 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 30 H 0.08 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.09 0.98 6.74 -51.93 -0.35 0.63 16 33 H 0.20 1.19 8.06 -52.49 -0.42 0.76 16 34 H 0.41 2.94 8.43 -40.82 -0.34 2.59 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 38 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 39 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.72 8.14 -51.92 -0.42 0.29 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.66 7.45 -51.93 -0.39 0.28 16 43 H 0.35 5.93 6.11 -39.29 -0.24 5.69 16 44 H 0.08 1.44 7.44 -51.93 -0.39 1.06 16 45 H 0.04 0.68 8.05 -51.93 -0.42 0.26 16 46 H 0.39 9.80 7.90 -40.82 -0.32 9.47 16 47 H 0.27 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 395.97 15.07 5.97 5.97 Total: -1.00 -33.86 395.97 -6.42 -40.28 By element: Atomic # 1 Polarization: 22.00 SS G_CDS: -6.86 Total: 15.14 kcal Atomic # 6 Polarization: 6.09 SS G_CDS: -0.99 Total: 5.10 kcal Atomic # 7 Polarization: -60.89 SS G_CDS: 0.15 Total: -60.74 kcal Atomic # 8 Polarization: -22.49 SS G_CDS: 0.34 Total: -22.15 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -33.86 -6.42 -40.28 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135845643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.334 kcal (2) G-P(sol) polarization free energy of solvation -33.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds