Wall clock time and date at job start Tue Mar 31 2020 21:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.41269 * 128.07939 * 2 1 4 4 N 1.30125 * 106.58982 * 180.23236 * 3 2 1 5 5 O 1.20887 * 111.98519 * 359.78428 * 4 3 2 6 6 C 1.34647 * 111.46747 * 359.97438 * 5 4 3 7 7 C 1.47508 * 126.94223 * 179.97438 * 6 5 4 8 8 O 1.21585 * 119.99798 * 180.02562 * 7 6 5 9 9 N 1.34775 * 120.00343 * 0.03098 * 7 6 5 10 10 C 1.46501 * 120.00112 * 179.97438 * 9 7 6 11 11 H 1.08993 * 109.47221 * 325.00536 * 10 9 7 12 12 C 1.53009 * 109.46715 * 84.99994 * 10 9 7 13 13 C 1.52999 * 109.47174 * 204.99652 * 10 9 7 14 14 C 1.53006 * 109.46626 * 65.00624 * 13 10 9 15 15 H 1.08992 * 109.47046 * 304.99570 * 14 13 10 16 16 C 1.52999 * 109.46811 * 184.99727 * 14 13 10 17 17 N 1.46897 * 109.47346 * 65.00011 * 14 13 10 18 18 C 1.46898 * 111.00134 * 205.00231 * 17 14 13 19 19 C 1.50700 * 109.47132 * 179.97438 * 18 17 14 20 20 O 1.21288 * 120.00123 * 359.97438 * 19 18 17 21 21 N 1.34778 * 119.99935 * 179.97438 * 19 18 17 22 22 C 1.37099 * 120.00096 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99533 * 0.02562 * 22 21 19 24 24 C 1.38952 * 119.99884 * 180.02562 * 22 21 19 25 25 N 1.31411 * 119.99800 * 0.02562 * 24 22 21 26 26 Si 1.86796 * 119.99776 * 180.02562 * 24 22 21 27 27 H 1.48501 * 109.46957 * 59.99950 * 26 24 22 28 28 H 1.48497 * 109.47083 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47146 * 299.99720 * 26 24 22 30 30 H 1.08994 * 109.47321 * 270.13280 * 1 2 3 31 31 H 1.09006 * 109.46831 * 30.12846 * 1 2 3 32 32 H 1.09004 * 109.47034 * 150.12762 * 1 2 3 33 33 H 1.07999 * 126.70000 * 359.97438 * 3 2 1 34 34 H 0.97002 * 119.99909 * 359.97438 * 9 7 6 35 35 H 1.08999 * 109.47112 * 179.97438 * 12 10 9 36 36 H 1.08998 * 109.46851 * 300.00329 * 12 10 9 37 37 H 1.09001 * 109.46642 * 60.00008 * 12 10 9 38 38 H 1.08993 * 109.47839 * 305.00693 * 13 10 9 39 39 H 1.09000 * 109.47160 * 185.00255 * 13 10 9 40 40 H 1.09009 * 109.47170 * 300.00068 * 16 14 13 41 41 H 1.09001 * 109.47273 * 59.99848 * 16 14 13 42 42 H 1.09002 * 109.46911 * 179.97438 * 16 14 13 43 43 H 1.00906 * 110.99744 * 328.95423 * 17 14 13 44 44 H 1.09001 * 109.46587 * 299.99529 * 18 17 14 45 45 H 1.08991 * 109.47405 * 59.99396 * 18 17 14 46 46 H 0.96996 * 119.99731 * 0.02562 * 21 19 18 47 47 H 0.97003 * 119.99357 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1120 0.0000 4 7 3.5891 0.6353 -0.0051 5 8 3.5995 -0.5735 -0.0039 6 6 2.3508 -1.0771 0.0029 7 6 1.9695 -2.5021 0.0057 8 8 0.7952 -2.8171 0.0115 9 7 2.9228 -3.4548 0.0019 10 6 2.5441 -4.8700 0.0053 11 1 1.6400 -5.0027 0.5993 12 6 2.2837 -5.3316 -1.4300 13 6 3.6783 -5.7000 0.6101 14 6 3.8553 -5.3249 2.0829 15 1 4.0108 -4.2495 2.1677 16 6 5.0678 -6.0622 2.6547 17 7 2.6515 -5.7064 2.8335 18 6 2.5021 -4.8845 4.0418 19 6 1.2590 -5.3034 4.7837 20 8 0.5655 -6.1982 4.3483 21 7 0.9179 -4.6838 5.9309 22 6 -0.2133 -5.0645 6.6056 23 1 -0.8307 -5.8613 6.2179 24 6 -0.5652 -4.4252 7.7880 25 7 0.1859 -3.4554 8.2594 26 14 -2.1060 -4.9445 8.7076 27 1 -1.9946 -6.3745 9.0922 28 1 -2.2567 -4.1141 9.9294 29 1 -3.2912 -4.7580 7.8325 30 1 -0.3634 0.0024 1.0276 31 1 -0.3633 0.8889 -0.5159 32 1 -0.3633 -0.8912 -0.5119 33 1 2.0947 2.1541 -0.0004 34 1 3.8597 -3.2034 -0.0030 35 1 2.0024 -6.3846 -1.4277 36 1 1.4758 -4.7402 -1.8609 37 1 3.1880 -5.1988 -2.0240 38 1 4.6035 -5.4989 0.0703 39 1 3.4348 -6.7595 0.5317 40 1 4.9123 -7.1378 2.5698 41 1 5.9610 -5.7792 2.0977 42 1 5.1942 -5.7947 3.7038 43 1 1.8290 -5.6473 2.2520 44 1 3.3722 -5.0211 4.6839 45 1 2.4200 -3.8350 3.7596 46 1 1.4723 -3.9679 6.2788 47 1 -0.0596 -3.0095 9.0850 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135845643.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:51 Heat of formation + Delta-G solvation = -43.614761 kcal Electronic energy + Delta-G solvation = -29819.080079 eV Core-core repulsion = 25617.997677 eV Total energy + Delta-G solvation = -4201.082402 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -46.10148 -41.12730 -40.20578 -38.63558 -36.43937 -35.92260 -35.62223 -33.75846 -33.31057 -32.56923 -31.46347 -29.29454 -28.20800 -27.58200 -25.74152 -25.34026 -23.71991 -22.37186 -21.78392 -21.15588 -21.13705 -19.96206 -19.75337 -18.88384 -17.89849 -17.50005 -16.98513 -16.93659 -16.53269 -16.21514 -16.09902 -15.73025 -15.57242 -15.40293 -14.89912 -14.66675 -14.35657 -14.25861 -14.23656 -13.92432 -13.67461 -13.57569 -13.47189 -13.31014 -13.18402 -12.89892 -12.81498 -12.67965 -12.45202 -12.35772 -12.24188 -12.12138 -11.90857 -11.52140 -11.49649 -11.46846 -11.40738 -10.65633 -10.36899 -10.21532 -10.03636 -9.32264 -8.47988 -5.97131 -0.34557 1.00981 1.38712 1.40157 1.45135 1.51593 1.82890 2.02580 2.13131 2.28231 2.92885 3.13179 3.18727 3.47698 3.53971 3.61728 3.72084 3.87244 3.92980 4.12794 4.24994 4.27528 4.38070 4.41398 4.48955 4.54968 4.63694 4.67158 4.74111 4.76215 4.81776 4.86490 4.95342 5.01882 5.05112 5.20954 5.22683 5.29691 5.36997 5.39080 5.49349 5.90562 6.12983 6.21723 6.41533 6.57908 6.86677 6.97262 7.10435 7.53191 8.08634 8.69355 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009038 B = 0.003232 C = 0.002692 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3097.321617 B = 8662.408747 C =10397.145327 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C -0.124 4.124 3 C -0.003 4.003 4 N -0.360 5.360 5 O 0.113 5.887 6 C -0.108 4.108 7 C 0.603 3.397 8 O -0.540 6.540 9 N -0.695 5.695 10 C 0.135 3.865 11 H 0.062 0.938 12 C -0.155 4.155 13 C -0.118 4.118 14 C 0.077 3.923 15 H 0.047 0.953 16 C -0.137 4.137 17 N -0.674 5.674 18 C 0.069 3.931 19 C 0.436 3.564 20 O -0.621 6.621 21 N -0.573 5.573 22 C -0.336 4.336 23 H 0.079 0.921 24 C -0.012 4.012 25 N -0.921 5.921 26 Si 0.993 3.007 27 H -0.271 1.271 28 H -0.269 1.269 29 H -0.272 1.272 30 H 0.078 0.922 31 H 0.104 0.896 32 H 0.072 0.928 33 H 0.233 0.767 34 H 0.418 0.582 35 H 0.079 0.921 36 H 0.042 0.958 37 H 0.081 0.919 38 H 0.113 0.887 39 H 0.096 0.904 40 H 0.056 0.944 41 H 0.084 0.916 42 H 0.041 0.959 43 H 0.340 0.660 44 H 0.102 0.898 45 H 0.050 0.950 46 H 0.395 0.605 47 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.003 6.953 -20.206 24.035 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.128 4.128 3 C -0.180 4.180 4 N -0.061 5.061 5 O 0.041 5.959 6 C -0.174 4.174 7 C 0.387 3.613 8 O -0.418 6.418 9 N -0.347 5.347 10 C 0.031 3.969 11 H 0.080 0.920 12 C -0.213 4.213 13 C -0.155 4.155 14 C -0.032 4.032 15 H 0.065 0.935 16 C -0.195 4.195 17 N -0.309 5.309 18 C -0.064 4.064 19 C 0.224 3.776 20 O -0.507 6.507 21 N -0.210 5.210 22 C -0.466 4.466 23 H 0.097 0.903 24 C -0.212 4.212 25 N -0.562 5.562 26 Si 0.817 3.183 27 H -0.196 1.196 28 H -0.193 1.193 29 H -0.197 1.197 30 H 0.096 0.904 31 H 0.123 0.877 32 H 0.091 0.909 33 H 0.249 0.751 34 H 0.256 0.744 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.100 0.900 38 H 0.132 0.868 39 H 0.114 0.886 40 H 0.075 0.925 41 H 0.102 0.898 42 H 0.060 0.940 43 H 0.160 0.840 44 H 0.120 0.880 45 H 0.068 0.932 46 H 0.228 0.772 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 11.232 6.261 -19.997 23.775 hybrid contribution -1.297 1.121 0.673 1.842 sum 9.935 7.383 -19.324 22.948 Atomic orbital electron populations 1.20377 0.85625 1.04726 1.03636 1.22005 0.99787 0.90631 1.00416 1.25545 0.86651 1.03399 1.02454 1.73725 1.24042 0.91288 1.17063 1.84922 1.27740 1.15597 1.67595 1.24005 0.85302 0.96153 1.11948 1.16647 0.85645 0.82145 0.76901 1.90881 1.18646 1.81050 1.51210 1.45919 1.09870 1.05963 1.72953 1.21188 0.98785 0.78714 0.98205 0.92024 1.22101 1.02533 1.02154 0.94557 1.22081 0.99067 1.01019 0.93370 1.21736 0.90429 0.97944 0.93055 0.93513 1.21792 0.96365 1.00783 1.00533 1.60275 1.06543 1.56370 1.07707 1.21510 0.95819 0.95242 0.93843 1.20874 0.88965 0.84823 0.82967 1.90480 1.56406 1.34359 1.69475 1.41926 1.24093 1.33811 1.21159 1.19648 1.02786 1.18801 1.05326 0.90339 1.26053 1.02095 0.95689 0.97326 1.69673 1.39942 1.23776 1.22762 0.84987 0.77447 0.78400 0.77502 1.19588 1.19303 1.19714 0.90394 0.87707 0.90883 0.75070 0.74396 0.90235 0.93831 0.90029 0.86850 0.88588 0.92492 0.89762 0.93975 0.83989 0.87980 0.93187 0.77150 0.91260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.61 9.95 71.24 0.71 -0.90 16 2 C -0.12 -2.53 6.37 -19.45 -0.12 -2.65 16 3 C 0.00 -0.05 12.14 85.69 1.04 0.99 16 4 N -0.36 -7.58 12.04 -58.55 -0.70 -8.28 16 5 O 0.11 2.35 11.04 65.77 0.73 3.07 16 6 C -0.11 -2.42 7.29 24.39 0.18 -2.25 16 7 C 0.60 14.77 7.78 86.69 0.67 15.44 16 8 O -0.54 -17.18 14.78 -3.98 -0.06 -17.23 16 9 N -0.69 -12.58 4.44 -445.73 -1.98 -14.57 16 10 C 0.13 2.55 2.48 44.99 0.11 2.66 16 11 H 0.06 1.66 5.72 -2.39 -0.01 1.65 16 12 C -0.16 -2.45 9.48 71.99 0.68 -1.76 16 13 C -0.12 -1.77 4.35 30.60 0.13 -1.64 16 14 C 0.08 1.64 2.59 44.92 0.12 1.75 16 15 H 0.05 0.96 7.28 -2.39 -0.02 0.95 16 16 C -0.14 -2.60 9.41 71.98 0.68 -1.92 16 17 N -0.67 -21.52 5.93 -495.60 -2.94 -24.46 16 18 C 0.07 2.51 5.97 85.56 0.51 3.02 16 19 C 0.44 21.85 7.82 87.66 0.69 22.54 16 20 O -0.62 -35.82 15.78 -3.05 -0.05 -35.87 16 21 N -0.57 -30.71 5.29 -306.98 -1.62 -32.34 16 22 C -0.34 -19.73 9.68 84.04 0.81 -18.92 16 23 H 0.08 4.89 7.16 -2.91 -0.02 4.87 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.19 16 25 N -0.92 -50.84 13.05 21.66 0.28 -50.56 16 26 Si 0.99 43.89 29.55 68.60 2.03 45.92 16 27 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 28 H -0.27 -11.10 7.11 99.48 0.71 -10.40 16 29 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 30 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 31 H 0.10 1.24 8.14 -2.38 -0.02 1.22 16 32 H 0.07 1.63 6.74 -2.39 -0.02 1.62 16 33 H 0.23 2.07 8.06 -2.91 -0.02 2.04 16 34 H 0.42 5.26 8.43 -92.71 -0.78 4.47 16 35 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 36 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 37 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 39 H 0.10 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.06 1.17 8.14 -2.38 -0.02 1.15 16 41 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 42 H 0.04 0.92 7.45 -2.39 -0.02 0.90 16 43 H 0.34 11.89 6.11 -89.69 -0.55 11.35 16 44 H 0.10 3.40 7.44 -2.39 -0.02 3.38 16 45 H 0.05 1.73 8.05 -2.39 -0.02 1.71 16 46 H 0.39 20.19 7.90 -92.71 -0.73 19.46 16 47 H 0.28 14.35 8.31 -92.71 -0.77 13.58 16 Total: -1.00 -75.92 395.97 1.32 -74.60 By element: Atomic # 1 Polarization: 44.57 SS G_CDS: -1.03 Total: 43.54 kcal Atomic # 6 Polarization: 9.50 SS G_CDS: 6.68 Total: 16.18 kcal Atomic # 7 Polarization: -123.24 SS G_CDS: -6.97 Total: -130.20 kcal Atomic # 8 Polarization: -50.65 SS G_CDS: 0.62 Total: -50.03 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -75.92 1.32 -74.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135845643.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.982 kcal (2) G-P(sol) polarization free energy of solvation -75.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.597 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds