Wall clock time and date at job start Tue Mar 31 2020 21:10:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.41264 * 128.08025 * 2 1 4 4 N 1.30127 * 106.58841 * 180.23308 * 3 2 1 5 5 O 1.20887 * 111.98317 * 359.78105 * 4 3 2 6 6 C 1.34638 * 111.46868 * 0.02562 * 5 4 3 7 7 C 1.47513 * 126.94154 * 179.97438 * 6 5 4 8 8 O 1.21580 * 120.00231 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00013 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99816 * 180.02562 * 9 7 6 11 11 H 1.08991 * 109.47356 * 34.99362 * 10 9 7 12 12 C 1.53002 * 109.46735 * 274.99431 * 10 9 7 13 13 C 1.53001 * 109.47331 * 154.99947 * 10 9 7 14 14 C 1.53000 * 109.46786 * 294.99844 * 13 10 9 15 15 H 1.09003 * 109.46980 * 304.99719 * 14 13 10 16 16 C 1.52995 * 109.47134 * 184.99812 * 14 13 10 17 17 N 1.46906 * 109.47281 * 64.99922 * 14 13 10 18 18 C 1.46901 * 110.99793 * 205.00148 * 17 14 13 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46986 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47457 * 119.99901 * 26 24 22 29 29 H 1.48501 * 109.47104 * 239.99973 * 26 24 22 30 30 H 1.09000 * 109.46876 * 270.12709 * 1 2 3 31 31 H 1.08996 * 109.47110 * 30.12793 * 1 2 3 32 32 H 1.08997 * 109.47323 * 150.12985 * 1 2 3 33 33 H 1.07998 * 126.70199 * 359.97438 * 3 2 1 34 34 H 0.96994 * 120.00075 * 359.97438 * 9 7 6 35 35 H 1.08997 * 109.47803 * 300.00145 * 12 10 9 36 36 H 1.09000 * 109.47021 * 60.00290 * 12 10 9 37 37 H 1.08999 * 109.46965 * 180.02562 * 12 10 9 38 38 H 1.08996 * 109.47160 * 174.99441 * 13 10 9 39 39 H 1.09003 * 109.46780 * 54.99490 * 13 10 9 40 40 H 1.09000 * 109.47395 * 179.97438 * 16 14 13 41 41 H 1.09003 * 109.47112 * 299.99827 * 16 14 13 42 42 H 1.09001 * 109.47056 * 59.99890 * 16 14 13 43 43 H 1.00899 * 110.99995 * 81.04546 * 17 14 13 44 44 H 1.09002 * 109.47401 * 59.99808 * 18 17 14 45 45 H 1.09001 * 109.46874 * 299.99821 * 18 17 14 46 46 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 47 47 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3783 1.1120 0.0000 4 7 3.5891 0.6352 -0.0051 5 8 3.5995 -0.5736 -0.0039 6 6 2.3508 -1.0771 0.0019 7 6 1.9695 -2.5021 0.0044 8 8 0.7952 -2.8172 0.0092 9 7 2.9228 -3.4548 0.0014 10 6 2.5441 -4.8700 0.0034 11 1 1.6348 -5.0036 -0.5826 12 6 2.2960 -5.3295 1.4415 13 6 3.6729 -5.7010 -0.6100 14 6 3.8373 -5.3280 -2.0847 15 1 2.8828 -5.4457 -2.5978 16 6 4.8792 -6.2443 -2.7293 17 7 4.2812 -3.9316 -2.1901 18 6 3.8966 -3.3534 -3.4846 19 6 4.3671 -1.9234 -3.5557 20 8 4.9645 -1.4344 -2.6202 21 7 4.1250 -1.1884 -4.6591 22 6 4.5535 0.1123 -4.7240 23 1 5.0847 0.5479 -3.8906 24 6 4.3035 0.8702 -5.8613 25 7 3.6567 0.3402 -6.8751 26 14 4.8880 2.6422 -5.9500 27 1 5.5862 2.9969 -4.6883 28 1 5.8218 2.7988 -7.0939 29 1 3.7200 3.5399 -6.1380 30 1 -0.3633 0.0023 1.0277 31 1 -0.3633 0.8888 -0.5158 32 1 -0.3634 -0.8911 -0.5118 33 1 2.0948 2.1541 -0.0004 34 1 3.8596 -3.2035 -0.0028 35 1 3.2052 -5.1959 2.0277 36 1 1.4918 -4.7376 1.8785 37 1 2.0147 -6.3826 1.4431 38 1 3.4301 -6.7604 -0.5279 39 1 4.6028 -5.4991 -0.0783 40 1 4.9960 -5.9790 -3.7801 41 1 5.8337 -6.1267 -2.2162 42 1 4.5499 -7.2805 -2.6511 43 1 5.2763 -3.8563 -2.0418 44 1 2.8120 -3.3842 -3.5885 45 1 4.3551 -3.9276 -4.2897 46 1 3.6476 -1.5796 -5.4074 47 1 3.4825 0.8693 -7.6692 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135845644.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:10:56 Heat of formation + Delta-G solvation = -14.996423 kcal Electronic energy + Delta-G solvation = -31248.207335 eV Core-core repulsion = 27048.365918 eV Total energy + Delta-G solvation = -4199.841417 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -44.51419 -39.65269 -38.38801 -37.22964 -35.08588 -34.23216 -33.82605 -32.30794 -31.42476 -31.10143 -30.10135 -27.95814 -26.92437 -26.18008 -23.97323 -23.85992 -22.31692 -21.08407 -20.72876 -20.13012 -19.19123 -18.23393 -17.85043 -17.23231 -16.32433 -16.04132 -15.45047 -15.19701 -14.85656 -14.68795 -14.50426 -14.26412 -14.02920 -13.73736 -13.51864 -13.45983 -13.10488 -13.01289 -12.82938 -12.75889 -12.45801 -12.36938 -12.20869 -12.12713 -11.86892 -11.54470 -11.43577 -11.30097 -11.04502 -10.87976 -10.83989 -10.76107 -10.32805 -10.19057 -9.95245 -9.89145 -9.47326 -9.15753 -8.82059 -8.37335 -7.98632 -7.90805 -6.38575 -3.78502 1.24831 2.50636 3.01244 3.17266 3.27718 3.35625 3.39920 3.62700 3.95339 4.11334 4.34436 4.54442 4.56296 4.90988 4.95129 5.06286 5.11855 5.17739 5.25424 5.29353 5.34019 5.38818 5.45094 5.50209 5.61897 5.69259 5.69941 5.76636 5.78160 5.80152 5.88923 5.96062 6.00872 6.07272 6.10425 6.14544 6.21413 6.30628 6.40405 6.69792 7.20844 7.58808 7.64801 7.73399 8.10305 8.34993 8.57865 8.64876 9.22062 9.58701 10.09828 10.79437 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009743 B = 0.004725 C = 0.003517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2873.128013 B = 5924.043606 C = 7960.133036 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.132 4.132 3 C -0.030 4.030 4 N -0.332 5.332 5 O 0.150 5.850 6 C -0.087 4.087 7 C 0.613 3.387 8 O -0.535 6.535 9 N -0.678 5.678 10 C 0.152 3.848 11 H 0.085 0.915 12 C -0.165 4.165 13 C -0.116 4.116 14 C 0.080 3.920 15 H 0.077 0.923 16 C -0.182 4.182 17 N -0.660 5.660 18 C 0.052 3.948 19 C 0.440 3.560 20 O -0.571 6.571 21 N -0.566 5.566 22 C -0.292 4.292 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.925 3.075 27 H -0.268 1.268 28 H -0.282 1.282 29 H -0.282 1.282 30 H 0.072 0.928 31 H 0.069 0.931 32 H 0.086 0.914 33 H 0.190 0.810 34 H 0.415 0.585 35 H 0.056 0.944 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.080 0.920 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.057 0.943 42 H 0.058 0.942 43 H 0.348 0.652 44 H 0.080 0.920 45 H 0.042 0.958 46 H 0.390 0.610 47 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.684 -11.680 12.546 17.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.137 4.137 3 C -0.207 4.207 4 N -0.026 5.026 5 O 0.071 5.929 6 C -0.153 4.153 7 C 0.397 3.603 8 O -0.413 6.413 9 N -0.328 5.328 10 C 0.047 3.953 11 H 0.103 0.897 12 C -0.223 4.223 13 C -0.154 4.154 14 C -0.031 4.031 15 H 0.096 0.904 16 C -0.241 4.241 17 N -0.292 5.292 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.455 6.455 21 N -0.203 5.203 22 C -0.422 4.422 23 H 0.120 0.880 24 C -0.180 4.180 25 N -0.545 5.545 26 Si 0.752 3.248 27 H -0.192 1.192 28 H -0.208 1.208 29 H -0.208 1.208 30 H 0.091 0.909 31 H 0.088 0.912 32 H 0.105 0.895 33 H 0.208 0.792 34 H 0.253 0.747 35 H 0.075 0.925 36 H 0.079 0.921 37 H 0.082 0.918 38 H 0.098 0.902 39 H 0.090 0.910 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.077 0.923 43 H 0.168 0.832 44 H 0.099 0.901 45 H 0.060 0.940 46 H 0.223 0.777 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.471 -10.638 13.328 17.402 hybrid contribution 0.289 0.406 -1.580 1.657 sum -3.181 -10.232 11.748 15.901 Atomic orbital electron populations 1.20227 0.87017 1.03854 1.02567 1.21504 0.98610 0.90630 1.02984 1.24855 0.88080 1.01757 1.06008 1.73756 1.22727 0.91595 1.14516 1.85053 1.27413 1.15039 1.65347 1.23895 0.85056 0.96076 1.10281 1.16418 0.85499 0.81739 0.76675 1.90769 1.17542 1.80959 1.52072 1.45743 1.10306 1.04988 1.71807 1.20834 0.98378 0.80056 0.96033 0.89672 1.22218 1.02150 1.01275 0.96693 1.21934 0.98853 0.99187 0.95437 1.21639 0.98364 0.87683 0.95368 0.90441 1.22508 0.99945 1.00360 1.01321 1.60247 1.21881 1.15176 1.31894 1.21672 1.00961 0.95065 0.90415 1.19820 0.85707 0.87446 0.84530 1.90556 1.45061 1.72628 1.37219 1.41864 1.51010 1.12089 1.15361 1.19707 1.33287 0.87041 1.02164 0.87980 1.25216 0.97259 1.00206 0.95276 1.69622 1.41230 1.37649 1.06004 0.85868 0.78366 0.82179 0.78389 1.19236 1.20790 1.20820 0.90901 0.91175 0.89498 0.79246 0.74684 0.92466 0.92076 0.91822 0.90193 0.90997 0.92557 0.92348 0.92310 0.83200 0.90143 0.94034 0.77692 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.07 9.95 36.01 0.36 -0.71 16 2 C -0.13 -2.17 6.37 -103.98 -0.66 -2.83 16 3 C -0.03 -0.50 12.14 -17.12 -0.21 -0.71 16 4 N -0.33 -6.48 12.04 30.46 0.37 -6.11 16 5 O 0.15 2.86 11.04 15.56 0.17 3.03 16 6 C -0.09 -1.52 7.29 -36.31 -0.26 -1.78 16 7 C 0.61 9.89 7.78 -12.48 -0.10 9.79 16 8 O -0.53 -9.31 14.78 5.30 0.08 -9.24 16 9 N -0.68 -8.96 3.80 -54.86 -0.21 -9.17 16 10 C 0.15 1.61 2.57 -67.93 -0.17 1.43 16 11 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 12 C -0.16 -1.50 9.48 37.16 0.35 -1.15 16 13 C -0.12 -0.98 4.54 -26.73 -0.12 -1.11 16 14 C 0.08 0.82 2.59 -67.71 -0.18 0.65 16 15 H 0.08 0.85 7.80 -51.93 -0.40 0.45 16 16 C -0.18 -1.66 9.16 37.16 0.34 -1.32 16 17 N -0.66 -9.00 3.48 -107.99 -0.38 -9.37 16 18 C 0.05 0.86 5.97 -4.97 -0.03 0.83 16 19 C 0.44 9.93 7.82 -10.98 -0.09 9.84 16 20 O -0.57 -14.31 15.78 5.55 0.09 -14.22 16 21 N -0.57 -14.26 5.29 -10.96 -0.06 -14.32 16 22 C -0.29 -8.18 9.68 -14.94 -0.14 -8.33 16 23 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 24 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 25 N -0.90 -24.92 13.05 55.50 0.72 -24.20 16 26 Si 0.92 21.54 29.55 -169.99 -5.02 16.52 16 27 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 30 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 32 H 0.09 1.28 6.73 -51.93 -0.35 0.93 16 33 H 0.19 2.48 8.06 -52.49 -0.42 2.06 16 34 H 0.42 5.61 7.42 -40.82 -0.30 5.31 16 35 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 41 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 42 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 43 H 0.35 4.94 8.17 -39.29 -0.32 4.62 16 44 H 0.08 1.34 8.06 -51.93 -0.42 0.93 16 45 H 0.04 0.64 7.44 -51.93 -0.39 0.26 16 46 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 47 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 396.31 15.07 5.97 5.97 Total: -1.00 -32.15 396.31 -6.30 -38.45 By element: Atomic # 1 Polarization: 24.58 SS G_CDS: -7.02 Total: 17.56 kcal Atomic # 6 Polarization: 6.10 SS G_CDS: -1.01 Total: 5.10 kcal Atomic # 7 Polarization: -63.62 SS G_CDS: 0.45 Total: -63.17 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: 0.34 Total: -20.42 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -32.15 -6.30 -38.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135845644.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.450 kcal (2) G-P(sol) polarization free energy of solvation -32.150 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.446 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds