Wall clock time and date at job start Tue Mar 31 2020 21:29:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.35319 * 128.04105 * 2 1 4 4 O 1.34014 * 106.66591 * 180.22081 * 3 2 1 5 5 N 1.20903 * 111.84827 * 359.76433 * 4 3 2 6 6 C 1.30979 * 111.43958 * 359.97438 * 5 4 3 7 7 C 1.48335 * 126.93884 * 179.97438 * 6 5 4 8 8 O 1.21488 * 120.00345 * 180.02562 * 7 6 5 9 9 N 1.34781 * 119.99622 * 0.02562 * 7 6 5 10 10 C 1.46500 * 119.99674 * 179.97438 * 9 7 6 11 11 H 1.09010 * 109.47039 * 35.00581 * 10 9 7 12 12 C 1.52996 * 109.47641 * 275.00322 * 10 9 7 13 13 C 1.53004 * 109.46893 * 155.00206 * 10 9 7 14 14 C 1.53002 * 109.47119 * 295.00224 * 13 10 9 15 15 H 1.09003 * 109.47094 * 54.99695 * 14 13 10 16 16 C 1.52994 * 109.47222 * 175.00007 * 14 13 10 17 17 N 1.46906 * 109.47092 * 295.00039 * 14 13 10 18 18 C 1.46901 * 110.99793 * 155.00227 * 17 14 13 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31418 * 120.00215 * 179.97438 * 24 22 21 26 26 Si 1.86804 * 120.00009 * 359.97438 * 24 22 21 27 27 H 1.48494 * 109.47177 * 89.99959 * 26 24 22 28 28 H 1.48505 * 109.47036 * 210.00243 * 26 24 22 29 29 H 1.48499 * 109.46776 * 329.99732 * 26 24 22 30 30 H 1.08997 * 109.46927 * 270.15182 * 1 2 3 31 31 H 1.08998 * 109.46768 * 30.14838 * 1 2 3 32 32 H 1.08999 * 109.46837 * 150.14924 * 1 2 3 33 33 H 1.08001 * 126.66236 * 359.96977 * 3 2 1 34 34 H 0.96996 * 120.00154 * 0.02562 * 9 7 6 35 35 H 1.08992 * 109.47414 * 179.97438 * 12 10 9 36 36 H 1.09001 * 109.46880 * 300.00288 * 12 10 9 37 37 H 1.09004 * 109.46810 * 60.00123 * 12 10 9 38 38 H 1.08998 * 109.47091 * 175.00582 * 13 10 9 39 39 H 1.08995 * 109.46967 * 55.00004 * 13 10 9 40 40 H 1.08996 * 109.47268 * 300.00419 * 16 14 13 41 41 H 1.09003 * 109.47340 * 59.99839 * 16 14 13 42 42 H 1.08995 * 109.47731 * 179.97438 * 16 14 13 43 43 H 1.00898 * 110.99995 * 278.95304 * 17 14 13 44 44 H 1.09002 * 109.47401 * 59.99808 * 18 17 14 45 45 H 1.09001 * 109.46874 * 299.99821 * 18 17 14 46 46 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 47 47 H 0.96996 * 119.99520 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3409 1.0657 0.0000 4 8 3.5889 0.5773 -0.0049 5 7 3.5989 -0.6317 -0.0032 6 6 2.3837 -1.1205 0.0035 7 6 1.9992 -2.5531 0.0070 8 8 0.8256 -2.8671 0.0129 9 7 2.9518 -3.5066 0.0036 10 6 2.5721 -4.9215 0.0076 11 1 1.6619 -5.0550 -0.5772 12 6 2.3256 -5.3794 1.4465 13 6 3.6995 -5.7538 -0.6064 14 6 3.8622 -5.3825 -2.0818 15 1 4.0176 -4.3073 -2.1708 16 6 5.0684 -6.1221 -2.6638 17 7 2.6507 -5.7649 -2.8195 18 6 2.4901 -4.9459 -4.0284 19 6 1.2400 -5.3664 -4.7575 20 8 0.5506 -6.2601 -4.3134 21 7 0.8877 -4.7488 -5.9024 22 6 -0.2498 -5.1310 -6.5655 23 1 -0.8633 -5.9273 -6.1705 24 6 -0.6128 -4.4947 -7.7460 25 7 -1.7029 -4.8614 -8.3819 26 14 0.4486 -3.1178 -8.4295 27 1 1.4714 -3.6880 -9.3426 28 1 -0.4045 -2.1601 -9.1781 29 1 1.1226 -2.4107 -7.3110 30 1 -0.3633 0.0027 1.0276 31 1 -0.3633 0.8887 -0.5161 32 1 -0.3633 -0.8913 -0.5115 33 1 2.0560 2.1075 -0.0005 34 1 3.8888 -3.2559 -0.0007 35 1 2.0426 -6.4320 1.4494 36 1 3.2357 -5.2458 2.0312 37 1 1.5223 -4.7864 1.8839 38 1 3.4560 -6.8130 -0.5231 39 1 4.6302 -5.5521 -0.0762 40 1 5.9673 -5.8385 -2.1164 41 1 4.9130 -7.1973 -2.5747 42 1 5.1842 -5.8580 -3.7149 43 1 2.6612 -6.7477 -3.0473 44 1 3.3537 -5.0847 -4.6787 45 1 2.4116 -3.8955 -3.7478 46 1 1.4388 -4.0339 -6.2573 47 1 -1.9564 -4.4168 -9.2059 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135871734.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:04 Heat of formation + Delta-G solvation = -13.197774 kcal Electronic energy + Delta-G solvation = -29810.465379 eV Core-core repulsion = 25610.701957 eV Total energy + Delta-G solvation = -4199.763422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -45.33772 -39.93016 -38.59276 -37.38013 -35.32843 -34.81936 -33.90888 -32.89444 -31.70115 -31.40586 -30.34041 -28.38088 -26.95624 -26.36973 -25.05758 -23.71215 -21.95038 -21.69903 -20.87312 -20.43629 -19.35872 -18.62746 -18.27364 -18.02905 -16.76708 -16.38515 -15.83747 -15.54162 -15.02018 -14.82849 -14.78264 -14.70187 -14.15302 -13.94166 -13.61563 -13.54323 -13.47804 -13.37595 -13.00675 -12.83835 -12.59177 -12.54538 -12.35770 -12.29849 -12.17194 -11.91235 -11.62336 -11.59069 -11.21198 -11.14599 -10.90979 -10.81563 -10.57732 -10.52094 -10.21680 -9.94642 -9.70476 -9.53981 -9.17085 -8.55304 -8.15761 -8.07693 -6.28073 -3.79075 0.89945 1.43562 2.73884 2.92617 3.04661 3.07142 3.07957 3.16105 3.73383 3.78189 4.10808 4.14226 4.33623 4.53764 4.61834 4.81632 4.83701 4.93432 5.06708 5.14365 5.23667 5.26189 5.30381 5.39774 5.40274 5.46622 5.48436 5.57892 5.61782 5.63029 5.68858 5.75108 5.82715 5.93050 5.99839 6.04831 6.07822 6.11762 6.26812 6.43370 7.14258 7.28306 7.61057 7.63260 7.73483 8.03687 8.18100 8.63263 8.98386 9.45900 9.86592 10.85236 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008597 B = 0.003514 C = 0.002863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3256.004826 B = 7966.307993 C = 9778.477218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C -0.148 4.148 3 C -0.069 4.069 4 O 0.120 5.880 5 N -0.335 5.335 6 C -0.025 4.025 7 C 0.597 3.403 8 O -0.508 6.508 9 N -0.707 5.707 10 C 0.143 3.857 11 H 0.114 0.886 12 C -0.163 4.163 13 C -0.112 4.112 14 C 0.080 3.920 15 H 0.075 0.925 16 C -0.184 4.184 17 N -0.659 5.659 18 C 0.050 3.950 19 C 0.451 3.549 20 O -0.562 6.562 21 N -0.592 5.592 22 C -0.303 4.303 23 H 0.120 0.880 24 C 0.042 3.958 25 N -0.882 5.882 26 Si 0.878 3.122 27 H -0.271 1.271 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.076 0.924 31 H 0.072 0.928 32 H 0.091 0.909 33 H 0.223 0.777 34 H 0.400 0.600 35 H 0.068 0.932 36 H 0.051 0.949 37 H 0.059 0.941 38 H 0.084 0.916 39 H 0.067 0.933 40 H 0.058 0.942 41 H 0.059 0.941 42 H 0.055 0.945 43 H 0.351 0.649 44 H 0.043 0.957 45 H 0.082 0.918 46 H 0.369 0.631 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.243 10.407 18.883 26.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.153 4.153 3 C -0.150 4.150 4 O 0.045 5.955 5 N -0.036 5.036 6 C -0.185 4.185 7 C 0.380 3.620 8 O -0.381 6.381 9 N -0.359 5.359 10 C 0.040 3.960 11 H 0.132 0.868 12 C -0.221 4.221 13 C -0.151 4.151 14 C -0.031 4.031 15 H 0.093 0.907 16 C -0.243 4.243 17 N -0.292 5.292 18 C -0.083 4.083 19 C 0.237 3.763 20 O -0.444 6.444 21 N -0.231 5.231 22 C -0.432 4.432 23 H 0.137 0.863 24 C -0.161 4.161 25 N -0.522 5.522 26 Si 0.705 3.295 27 H -0.197 1.197 28 H -0.201 1.201 29 H -0.196 1.196 30 H 0.095 0.905 31 H 0.091 0.909 32 H 0.109 0.891 33 H 0.240 0.760 34 H 0.234 0.766 35 H 0.087 0.913 36 H 0.070 0.930 37 H 0.078 0.922 38 H 0.102 0.898 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.074 0.926 43 H 0.171 0.829 44 H 0.061 0.939 45 H 0.100 0.900 46 H 0.202 0.798 47 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 14.517 9.320 19.369 25.938 hybrid contribution 1.193 1.271 -1.368 2.216 sum 15.710 10.591 18.001 26.134 Atomic orbital electron populations 1.20262 0.86396 1.04365 1.03184 1.21431 0.99293 0.90087 1.04447 1.25788 0.82295 1.01359 1.05560 1.84749 1.29554 1.15224 1.65926 1.74122 1.21690 0.91725 1.16061 1.23592 0.89515 0.97435 1.07958 1.16829 0.85833 0.82174 0.77186 1.90831 1.17296 1.81353 1.48593 1.45933 1.09205 1.06521 1.74249 1.21120 1.00521 0.77847 0.96539 0.86787 1.22185 1.01637 1.01955 0.96322 1.21872 0.97673 1.00871 0.94637 1.21612 0.88263 0.99650 0.93548 0.90688 1.22529 0.99098 1.01269 1.01386 1.60153 1.36710 1.09258 1.23035 1.21695 0.96549 0.98578 0.91431 1.19708 0.88050 0.85950 0.82584 1.90565 1.54575 1.32264 1.66990 1.42207 1.24637 1.33915 1.22388 1.19436 1.00166 1.19303 1.04279 0.86267 1.25020 0.96544 0.98072 0.96480 1.69625 1.23257 1.41797 1.17559 0.86692 0.80732 0.82433 0.79667 1.19680 1.20135 1.19573 0.90546 0.90900 0.89058 0.76036 0.76576 0.91263 0.92964 0.92220 0.89781 0.91456 0.92245 0.92147 0.92571 0.82876 0.93907 0.89993 0.79806 0.91664 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 10.01 36.01 0.36 -0.46 16 2 C -0.15 -1.54 6.34 -104.11 -0.66 -2.21 16 3 C -0.07 -0.51 12.24 29.69 0.36 -0.15 16 4 O 0.12 1.12 11.18 17.25 0.19 1.31 16 5 N -0.33 -3.78 11.84 33.29 0.39 -3.39 16 6 C -0.03 -0.32 7.19 -82.53 -0.59 -0.91 16 7 C 0.60 8.41 7.81 -12.10 -0.09 8.32 16 8 O -0.51 -8.79 15.00 5.38 0.08 -8.71 16 9 N -0.71 -8.18 4.45 -54.59 -0.24 -8.42 16 10 C 0.14 1.68 2.52 -67.93 -0.17 1.51 16 11 H 0.11 1.81 7.05 -51.92 -0.37 1.44 16 12 C -0.16 -1.68 9.48 37.16 0.35 -1.33 16 13 C -0.11 -1.07 4.43 -26.73 -0.12 -1.19 16 14 C 0.08 0.89 2.53 -67.71 -0.17 0.72 16 15 H 0.07 0.87 7.28 -51.93 -0.38 0.49 16 16 C -0.18 -1.76 9.16 37.15 0.34 -1.42 16 17 N -0.66 -10.07 5.25 -107.99 -0.57 -10.64 16 18 C 0.05 0.87 5.97 -4.97 -0.03 0.84 16 19 C 0.45 10.58 7.82 -10.98 -0.09 10.49 16 20 O -0.56 -15.43 15.78 5.55 0.09 -15.34 16 21 N -0.59 -14.57 5.09 -10.96 -0.06 -14.63 16 22 C -0.30 -8.79 10.16 -14.94 -0.15 -8.94 16 23 H 0.12 3.94 7.39 -52.49 -0.39 3.55 16 24 C 0.04 1.16 5.50 -17.47 -0.10 1.07 16 25 N -0.88 -26.21 13.96 55.50 0.77 -25.43 16 26 Si 0.88 19.83 27.74 -169.99 -4.71 15.11 16 27 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 28 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 29 H -0.27 -5.63 6.52 56.52 0.37 -5.26 16 30 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 1.15 6.89 -51.93 -0.36 0.79 16 33 H 0.22 0.58 8.06 -52.49 -0.42 0.16 16 34 H 0.40 3.88 8.36 -40.82 -0.34 3.54 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 42 H 0.06 0.58 7.45 -51.93 -0.39 0.19 16 43 H 0.35 5.54 8.17 -39.29 -0.32 5.22 16 44 H 0.04 0.65 7.44 -51.93 -0.39 0.26 16 45 H 0.08 1.37 8.06 -51.93 -0.42 0.95 16 46 H 0.37 8.05 5.76 -40.82 -0.24 7.82 16 47 H 0.27 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 395.66 15.07 5.96 5.96 Total: -1.00 -35.58 395.66 -5.82 -41.40 By element: Atomic # 1 Polarization: 23.41 SS G_CDS: -6.97 Total: 16.44 kcal Atomic # 6 Polarization: 7.09 SS G_CDS: -0.76 Total: 6.34 kcal Atomic # 7 Polarization: -62.81 SS G_CDS: 0.30 Total: -62.51 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: 0.36 Total: -22.74 kcal Atomic # 14 Polarization: 19.83 SS G_CDS: -4.71 Total: 15.11 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.58 -5.82 -41.40 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135871734.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.200 kcal (2) G-P(sol) polarization free energy of solvation -35.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.380 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.398 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds