Wall clock time and date at job start Tue Mar 31 2020 21:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35312 * 128.03607 * 2 1 4 4 O 1.34016 * 106.66834 * 180.22728 * 3 2 1 5 5 N 1.20907 * 111.84570 * 359.76034 * 4 3 2 6 6 C 1.30988 * 111.43645 * 359.97438 * 5 4 3 7 7 C 1.48328 * 126.93389 * 179.97438 * 6 5 4 8 8 O 1.21499 * 120.00114 * 180.02562 * 7 6 5 9 9 N 1.34773 * 120.00356 * 0.02562 * 7 6 5 10 10 C 1.46504 * 120.00167 * 180.27585 * 9 7 6 11 11 H 1.08997 * 109.46937 * 325.85281 * 10 9 7 12 12 C 1.52990 * 109.47124 * 85.85574 * 10 9 7 13 13 C 1.53007 * 109.47051 * 205.85685 * 10 9 7 14 14 C 1.53001 * 109.47157 * 64.48607 * 13 10 9 15 15 H 1.09001 * 109.46994 * 305.89882 * 14 13 10 16 16 C 1.52993 * 109.47342 * 65.90321 * 14 13 10 17 17 N 1.46900 * 109.46795 * 185.90471 * 14 13 10 18 18 C 1.46904 * 111.00053 * 155.38235 * 17 14 13 19 19 C 1.50691 * 109.47135 * 179.97438 * 18 17 14 20 20 O 1.21294 * 120.00456 * 359.97438 * 19 18 17 21 21 N 1.34783 * 120.00049 * 180.02562 * 19 18 17 22 22 C 1.37100 * 120.00231 * 179.97438 * 21 19 18 23 23 H 1.07996 * 119.99638 * 359.97438 * 22 21 19 24 24 C 1.38944 * 119.99975 * 179.97438 * 22 21 19 25 25 N 1.31410 * 119.99862 * 180.02562 * 24 22 21 26 26 Si 1.86796 * 120.00139 * 359.97438 * 24 22 21 27 27 H 1.48504 * 109.46863 * 90.00026 * 26 24 22 28 28 H 1.48498 * 109.47352 * 209.99810 * 26 24 22 29 29 H 1.48493 * 109.47368 * 330.00190 * 26 24 22 30 30 H 1.09006 * 109.47014 * 270.14807 * 1 2 3 31 31 H 1.08996 * 109.47589 * 30.15534 * 1 2 3 32 32 H 1.09003 * 109.47292 * 150.15596 * 1 2 3 33 33 H 1.08007 * 126.66830 * 359.96493 * 3 2 1 34 34 H 0.97000 * 120.00368 * 0.02562 * 9 7 6 35 35 H 1.09007 * 109.47085 * 180.02562 * 12 10 9 36 36 H 1.09000 * 109.47287 * 299.99734 * 12 10 9 37 37 H 1.08997 * 109.47452 * 60.00023 * 12 10 9 38 38 H 1.09002 * 109.46916 * 184.48743 * 13 10 9 39 39 H 1.08995 * 109.46940 * 304.48499 * 13 10 9 40 40 H 1.09004 * 109.47135 * 180.02562 * 16 14 13 41 41 H 1.09001 * 109.46797 * 299.99781 * 16 14 13 42 42 H 1.09001 * 109.47435 * 59.99830 * 16 14 13 43 43 H 1.00895 * 111.00496 * 31.42339 * 17 14 13 44 44 H 1.08999 * 109.46714 * 299.99816 * 18 17 14 45 45 H 1.08994 * 109.47266 * 59.99094 * 18 17 14 46 46 H 0.97000 * 119.99601 * 359.97438 * 21 19 18 47 47 H 0.97001 * 119.99942 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5775 -0.0051 5 7 3.5989 -0.6316 -0.0034 6 6 2.3837 -1.1205 0.0035 7 6 1.9993 -2.5531 0.0070 8 8 0.8256 -2.8671 0.0131 9 7 2.9519 -3.5064 0.0035 10 6 2.5722 -4.9214 0.0009 11 1 1.6575 -5.0531 0.5787 12 6 2.3373 -5.3837 -1.4384 13 6 3.6947 -5.7518 0.6266 14 6 3.8541 -5.3668 2.0987 15 1 3.9973 -4.2893 2.1790 16 6 2.5977 -5.7734 2.8712 17 7 5.0209 -6.0591 2.6622 18 6 5.5600 -5.3279 3.8167 19 6 6.7525 -6.0667 4.3670 20 8 7.1172 -7.1010 3.8488 21 7 7.4132 -5.5789 5.4356 22 6 8.4979 -6.2513 5.9366 23 1 8.8225 -7.1722 5.4752 24 6 9.1793 -5.7481 7.0380 25 7 10.2192 -6.3924 7.5179 26 14 8.6181 -4.1549 7.8356 27 1 7.6265 -4.4563 8.8991 28 1 9.7878 -3.4609 8.4317 29 1 7.9939 -3.2810 6.8101 30 1 -0.3633 0.0027 1.0277 31 1 -0.3634 0.8885 -0.5162 32 1 -0.3634 -0.8914 -0.5114 33 1 2.0558 2.1076 -0.0005 34 1 3.8890 -3.2558 -0.0009 35 1 2.0544 -6.4364 -1.4404 36 1 1.5376 -4.7921 -1.8842 37 1 3.2521 -5.2519 -2.0163 38 1 3.4476 -6.8109 0.5526 39 1 4.6278 -5.5586 0.0974 40 1 2.7111 -5.4987 3.9199 41 1 1.7320 -5.2598 2.4530 42 1 2.4546 -6.8510 2.7909 43 1 5.7314 -6.2006 1.9600 44 1 5.8636 -4.3287 3.5043 45 1 4.7935 -5.2502 4.5877 46 1 7.1213 -4.7519 5.8502 47 1 10.6948 -6.0413 8.2870 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135871735.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:09 Heat of formation + Delta-G solvation = -12.751553 kcal Electronic energy + Delta-G solvation = -29040.289440 eV Core-core repulsion = 24840.545367 eV Total energy + Delta-G solvation = -4199.744072 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -45.52466 -40.26458 -38.62939 -37.55798 -35.45727 -35.04274 -33.94266 -33.11956 -31.79557 -31.57086 -30.26525 -28.60676 -27.19483 -26.42032 -25.31077 -23.84419 -22.16107 -21.88832 -21.00886 -20.30508 -19.38901 -18.80731 -18.29964 -18.20656 -17.02053 -16.48760 -16.33324 -15.52174 -15.33470 -15.14673 -14.87986 -14.64428 -14.37049 -14.13208 -13.79132 -13.70606 -13.66337 -13.54334 -13.06445 -12.86674 -12.81775 -12.61355 -12.40946 -12.24282 -12.16469 -11.96695 -11.82536 -11.75800 -11.30734 -11.14058 -10.97712 -10.78465 -10.73771 -10.59203 -10.53894 -9.97237 -9.90224 -9.56893 -9.49801 -8.57387 -8.19576 -8.14310 -6.30770 -3.82094 0.70374 1.21708 2.49565 2.71875 2.76901 3.02857 3.07340 3.15154 3.51127 3.74269 3.94814 4.10528 4.12207 4.39800 4.58316 4.59742 4.64032 4.74541 4.91882 4.96352 5.08073 5.17010 5.18516 5.21048 5.22440 5.30423 5.36025 5.38942 5.55125 5.59590 5.68229 5.74324 5.75036 5.79959 5.84664 5.92303 5.95097 6.02171 6.10508 6.32402 6.98210 7.12767 7.53444 7.57936 7.59885 7.71746 8.14940 8.60268 8.95339 9.42912 9.83224 10.82389 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.011693 B = 0.002467 C = 0.002151 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2393.989911 B =11347.855205 C =13012.139054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.152 4.152 3 C -0.066 4.066 4 O 0.126 5.874 5 N -0.329 5.329 6 C -0.032 4.032 7 C 0.601 3.399 8 O -0.520 6.520 9 N -0.708 5.708 10 C 0.141 3.859 11 H 0.099 0.901 12 C -0.163 4.163 13 C -0.130 4.130 14 C 0.083 3.917 15 H 0.040 0.960 16 C -0.142 4.142 17 N -0.663 5.663 18 C 0.048 3.952 19 C 0.451 3.549 20 O -0.564 6.564 21 N -0.591 5.591 22 C -0.304 4.304 23 H 0.120 0.880 24 C 0.041 3.959 25 N -0.881 5.881 26 Si 0.879 3.121 27 H -0.270 1.270 28 H -0.276 1.276 29 H -0.270 1.270 30 H 0.077 0.923 31 H 0.072 0.928 32 H 0.087 0.913 33 H 0.224 0.776 34 H 0.406 0.594 35 H 0.071 0.929 36 H 0.060 0.940 37 H 0.058 0.942 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.065 0.935 43 H 0.350 0.650 44 H 0.043 0.957 45 H 0.086 0.914 46 H 0.370 0.630 47 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.824 16.335 -17.528 31.744 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.156 4.156 3 C -0.146 4.146 4 O 0.050 5.950 5 N -0.029 5.029 6 C -0.191 4.191 7 C 0.385 3.615 8 O -0.394 6.394 9 N -0.360 5.360 10 C 0.037 3.963 11 H 0.117 0.883 12 C -0.222 4.222 13 C -0.168 4.168 14 C -0.027 4.027 15 H 0.058 0.942 16 C -0.200 4.200 17 N -0.296 5.296 18 C -0.084 4.084 19 C 0.236 3.764 20 O -0.446 6.446 21 N -0.231 5.231 22 C -0.433 4.433 23 H 0.137 0.863 24 C -0.162 4.162 25 N -0.522 5.522 26 Si 0.706 3.294 27 H -0.196 1.196 28 H -0.202 1.202 29 H -0.196 1.196 30 H 0.096 0.904 31 H 0.090 0.910 32 H 0.105 0.895 33 H 0.241 0.759 34 H 0.241 0.759 35 H 0.090 0.910 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.113 0.887 39 H 0.089 0.911 40 H 0.073 0.927 41 H 0.072 0.928 42 H 0.084 0.916 43 H 0.170 0.830 44 H 0.061 0.939 45 H 0.104 0.896 46 H 0.203 0.797 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -20.412 14.284 -17.328 30.347 hybrid contribution -0.070 2.505 0.453 2.546 sum -20.481 16.789 -16.876 31.403 Atomic orbital electron populations 1.20229 0.86463 1.03889 1.03342 1.21387 0.99191 0.90059 1.05006 1.25831 0.82292 1.01425 1.05097 1.84792 1.29526 1.15136 1.65544 1.74195 1.21579 0.91777 1.15332 1.23490 0.89651 0.97194 1.08749 1.16832 0.85646 0.82307 0.76696 1.90781 1.17346 1.81616 1.49682 1.46024 1.09798 1.06313 1.73816 1.21172 0.99398 0.78458 0.97243 0.88310 1.22180 1.02229 1.02010 0.95760 1.22104 0.98326 1.01334 0.95024 1.21527 0.92440 0.95912 0.92862 0.94176 1.21858 0.95786 1.02264 1.00110 1.60118 1.09835 1.49184 1.10492 1.21745 0.96923 0.94910 0.94868 1.19706 0.85789 0.87607 0.83270 1.90562 1.68625 1.24689 1.60743 1.42217 1.28901 1.23598 1.28349 1.19430 1.03912 1.08265 1.11710 0.86275 1.25035 0.96087 0.98178 0.96874 1.69622 1.18980 1.39106 1.24442 0.86673 0.79181 0.83393 0.80154 1.19586 1.20162 1.19566 0.90435 0.90957 0.89455 0.75943 0.75877 0.90974 0.92087 0.92272 0.88720 0.91080 0.92713 0.92750 0.91614 0.82993 0.93929 0.89583 0.79719 0.91620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.52 10.01 36.01 0.36 -0.16 16 2 C -0.15 -1.20 6.34 -104.12 -0.66 -1.86 16 3 C -0.07 -0.36 12.24 29.69 0.36 0.00 16 4 O 0.13 1.04 11.18 17.24 0.19 1.23 16 5 N -0.33 -3.35 11.84 33.29 0.39 -2.96 16 6 C -0.03 -0.32 7.19 -82.53 -0.59 -0.92 16 7 C 0.60 6.67 7.82 -12.11 -0.09 6.58 16 8 O -0.52 -6.72 14.99 5.37 0.08 -6.64 16 9 N -0.71 -6.73 4.40 -54.60 -0.24 -6.97 16 10 C 0.14 1.26 2.46 -67.93 -0.17 1.09 16 11 H 0.10 0.99 5.80 -51.93 -0.30 0.69 16 12 C -0.16 -1.30 9.49 37.15 0.35 -0.94 16 13 C -0.13 -1.20 4.28 -26.73 -0.11 -1.32 16 14 C 0.08 0.97 2.63 -67.72 -0.18 0.79 16 15 H 0.04 0.48 7.24 -51.93 -0.38 0.10 16 16 C -0.14 -1.65 9.19 37.15 0.34 -1.31 16 17 N -0.66 -10.19 5.93 -108.00 -0.64 -10.83 16 18 C 0.05 0.82 5.97 -4.98 -0.03 0.79 16 19 C 0.45 10.39 7.82 -10.99 -0.09 10.30 16 20 O -0.56 -15.30 15.78 5.55 0.09 -15.21 16 21 N -0.59 -14.33 5.09 -10.97 -0.06 -14.38 16 22 C -0.30 -8.72 10.16 -14.93 -0.15 -8.87 16 23 H 0.12 3.89 7.39 -52.49 -0.39 3.50 16 24 C 0.04 1.14 5.50 -17.47 -0.10 1.04 16 25 N -0.88 -25.96 13.96 55.50 0.77 -25.19 16 26 Si 0.88 19.62 27.73 -169.99 -4.71 14.90 16 27 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 28 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 29 H -0.27 -5.52 6.52 56.52 0.37 -5.15 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.09 0.70 6.89 -51.93 -0.36 0.34 16 33 H 0.22 0.18 8.06 -52.48 -0.42 -0.24 16 34 H 0.41 3.63 8.37 -40.82 -0.34 3.29 16 35 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 38 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.62 8.00 -51.93 -0.42 0.21 16 40 H 0.05 0.67 7.43 -51.93 -0.39 0.29 16 41 H 0.05 0.57 6.50 -51.93 -0.34 0.23 16 42 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 43 H 0.35 5.49 7.97 -39.29 -0.31 5.18 16 44 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 45 H 0.09 1.35 7.41 -51.93 -0.38 0.97 16 46 H 0.37 7.92 5.76 -40.82 -0.24 7.68 16 47 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 392.93 15.07 5.92 5.92 Total: -1.00 -35.12 392.93 -5.76 -40.88 By element: Atomic # 1 Polarization: 20.83 SS G_CDS: -6.81 Total: 14.03 kcal Atomic # 6 Polarization: 5.99 SS G_CDS: -0.75 Total: 5.23 kcal Atomic # 7 Polarization: -60.57 SS G_CDS: 0.23 Total: -60.33 kcal Atomic # 8 Polarization: -20.99 SS G_CDS: 0.36 Total: -20.63 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -4.71 Total: 14.90 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -35.12 -5.76 -40.88 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135871735.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.127 kcal (2) G-P(sol) polarization free energy of solvation -35.118 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.878 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds