Wall clock time and date at job start Tue Mar 31 2020 21:29:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35314 * 128.04061 * 2 1 4 4 O 1.34014 * 106.66405 * 180.22938 * 3 2 1 5 5 N 1.20900 * 111.85304 * 359.75829 * 4 3 2 6 6 C 1.30989 * 111.43507 * 0.02562 * 5 4 3 7 7 C 1.48331 * 126.93626 * 179.97438 * 6 5 4 8 8 O 1.21494 * 119.99716 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00033 * 0.02635 * 7 6 5 10 10 C 1.46500 * 119.99816 * 180.02562 * 9 7 6 11 11 H 1.08991 * 109.47356 * 34.99362 * 10 9 7 12 12 C 1.53002 * 109.46735 * 274.99431 * 10 9 7 13 13 C 1.53001 * 109.47331 * 154.99947 * 10 9 7 14 14 C 1.53000 * 109.46786 * 294.99844 * 13 10 9 15 15 H 1.09003 * 109.46980 * 304.99719 * 14 13 10 16 16 C 1.52995 * 109.47134 * 184.99812 * 14 13 10 17 17 N 1.46906 * 109.47281 * 64.99922 * 14 13 10 18 18 C 1.46901 * 110.99793 * 205.00148 * 17 14 13 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46986 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47457 * 119.99901 * 26 24 22 29 29 H 1.48501 * 109.47104 * 239.99973 * 26 24 22 30 30 H 1.09006 * 109.47113 * 270.15258 * 1 2 3 31 31 H 1.09002 * 109.47269 * 30.14451 * 1 2 3 32 32 H 1.08995 * 109.47816 * 150.14778 * 1 2 3 33 33 H 1.08000 * 126.66480 * 359.96698 * 3 2 1 34 34 H 0.96994 * 120.00075 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47021 * 60.00290 * 12 10 9 36 36 H 1.08999 * 109.46965 * 180.02562 * 12 10 9 37 37 H 1.08997 * 109.47803 * 300.00145 * 12 10 9 38 38 H 1.08996 * 109.47160 * 174.99441 * 13 10 9 39 39 H 1.09003 * 109.46780 * 54.99490 * 13 10 9 40 40 H 1.09003 * 109.47112 * 299.99827 * 16 14 13 41 41 H 1.09001 * 109.47056 * 59.99890 * 16 14 13 42 42 H 1.09000 * 109.47395 * 179.97438 * 16 14 13 43 43 H 1.00899 * 110.99995 * 81.04546 * 17 14 13 44 44 H 1.09002 * 109.47401 * 59.99808 * 18 17 14 45 45 H 1.09001 * 109.46874 * 299.99821 * 18 17 14 46 46 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 47 47 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5772 -0.0051 5 7 3.5988 -0.6317 -0.0034 6 6 2.3836 -1.1206 0.0024 7 6 1.9991 -2.5532 0.0056 8 8 0.8254 -2.8671 0.0107 9 7 2.9517 -3.5066 0.0030 10 6 2.5719 -4.9215 0.0056 11 1 1.6625 -5.0547 -0.5803 12 6 2.3236 -5.3802 1.4439 13 6 3.7000 -5.7536 -0.6075 14 6 3.8646 -5.3814 -2.0824 15 1 2.9100 -5.4985 -2.5954 16 6 4.9058 -6.2988 -2.7267 17 7 4.3095 -3.9853 -2.1885 18 6 3.9253 -3.4073 -3.4832 19 6 4.3969 -1.9778 -3.5549 20 8 4.9947 -1.4888 -2.6196 21 7 4.1553 -1.2431 -4.6586 22 6 4.5848 0.0573 -4.7240 23 1 5.1164 0.4929 -3.8909 24 6 4.3352 0.8149 -5.8616 25 7 3.6879 0.2850 -6.8752 26 14 4.9210 2.5864 -5.9511 27 1 5.6196 2.9411 -4.6897 28 1 5.8549 2.7419 -7.0952 29 1 3.7537 3.4849 -6.1395 30 1 -0.3634 0.0027 1.0277 31 1 -0.3634 0.8887 -0.5161 32 1 -0.3634 -0.8912 -0.5115 33 1 2.0560 2.1075 -0.0005 34 1 3.8887 -3.2560 -0.0014 35 1 1.5199 -4.7875 1.8807 36 1 2.0415 -6.4330 1.4459 37 1 3.2330 -5.2471 2.0299 38 1 3.4564 -6.8128 -0.5250 39 1 4.6301 -5.5522 -0.0759 40 1 5.8604 -6.1816 -2.2138 41 1 4.5757 -7.3346 -2.6480 42 1 5.0227 -6.0339 -3.7776 43 1 5.3048 -3.9107 -2.0402 44 1 2.8406 -3.4374 -3.5870 45 1 4.3834 -3.9823 -4.2880 46 1 3.6775 -1.6342 -5.4066 47 1 3.5141 0.8139 -7.6695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001135871737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:17 Heat of formation + Delta-G solvation = -14.905156 kcal Electronic energy + Delta-G solvation = -31182.413161 eV Core-core repulsion = 26982.575702 eV Total energy + Delta-G solvation = -4199.837460 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -44.58194 -39.55690 -38.34865 -37.17745 -34.96388 -34.21527 -33.81574 -32.35567 -31.34552 -31.04136 -29.99132 -27.85290 -26.90827 -26.16230 -24.50110 -23.89253 -21.49338 -21.23446 -20.74576 -20.03762 -19.16802 -17.95671 -17.83033 -17.24367 -16.33022 -16.05594 -15.88460 -15.16443 -14.82856 -14.65186 -14.38829 -14.24026 -13.97431 -13.72864 -13.51073 -13.42805 -13.07300 -12.98188 -12.94971 -12.72858 -12.42439 -12.18561 -12.10464 -12.05639 -11.84074 -11.53444 -11.41452 -11.27936 -11.03998 -10.91119 -10.81820 -10.72346 -10.32735 -10.18461 -9.81914 -9.79897 -9.46024 -9.05281 -8.80806 -8.34097 -7.95136 -7.88927 -6.37490 -3.77528 1.68471 2.03958 3.17542 3.27789 3.30909 3.35042 3.55842 3.67271 3.97347 4.12022 4.33805 4.43517 4.57801 4.93696 4.94781 5.14212 5.18282 5.19838 5.27087 5.30711 5.36328 5.41198 5.46993 5.52217 5.66930 5.70814 5.76315 5.79062 5.81541 5.85023 5.89733 5.93276 6.04090 6.08265 6.08784 6.14415 6.24213 6.32441 6.45588 6.81240 7.23815 7.59085 7.67215 7.87053 8.11048 8.45452 8.60057 8.66525 9.22955 9.60019 10.11681 10.80671 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.004730 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.161684 B = 5918.737951 C = 7993.628714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C -0.158 4.158 3 C -0.076 4.076 4 O 0.131 5.869 5 N -0.289 5.289 6 C -0.037 4.037 7 C 0.607 3.393 8 O -0.547 6.547 9 N -0.678 5.678 10 C 0.152 3.848 11 H 0.084 0.916 12 C -0.164 4.164 13 C -0.115 4.115 14 C 0.080 3.920 15 H 0.077 0.923 16 C -0.182 4.182 17 N -0.658 5.658 18 C 0.052 3.948 19 C 0.440 3.560 20 O -0.567 6.567 21 N -0.568 5.568 22 C -0.292 4.292 23 H 0.103 0.897 24 C 0.020 3.980 25 N -0.904 5.904 26 Si 0.926 3.074 27 H -0.268 1.268 28 H -0.283 1.283 29 H -0.282 1.282 30 H 0.069 0.931 31 H 0.067 0.933 32 H 0.083 0.917 33 H 0.215 0.785 34 H 0.415 0.585 35 H 0.059 0.941 36 H 0.062 0.938 37 H 0.055 0.945 38 H 0.079 0.921 39 H 0.070 0.930 40 H 0.057 0.943 41 H 0.058 0.942 42 H 0.055 0.945 43 H 0.347 0.653 44 H 0.079 0.921 45 H 0.041 0.959 46 H 0.390 0.610 47 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.367 -8.874 12.597 15.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.163 4.163 3 C -0.156 4.156 4 O 0.052 5.948 5 N 0.015 4.985 6 C -0.196 4.196 7 C 0.392 3.608 8 O -0.424 6.424 9 N -0.329 5.329 10 C 0.047 3.953 11 H 0.102 0.898 12 C -0.223 4.223 13 C -0.154 4.154 14 C -0.030 4.030 15 H 0.095 0.905 16 C -0.241 4.241 17 N -0.290 5.290 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.449 6.449 21 N -0.205 5.205 22 C -0.422 4.422 23 H 0.120 0.880 24 C -0.181 4.181 25 N -0.546 5.546 26 Si 0.753 3.247 27 H -0.192 1.192 28 H -0.209 1.209 29 H -0.208 1.208 30 H 0.087 0.913 31 H 0.086 0.914 32 H 0.102 0.898 33 H 0.232 0.768 34 H 0.253 0.747 35 H 0.079 0.921 36 H 0.081 0.919 37 H 0.074 0.926 38 H 0.097 0.903 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.077 0.923 42 H 0.074 0.926 43 H 0.167 0.833 44 H 0.097 0.903 45 H 0.059 0.941 46 H 0.223 0.777 47 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -3.165 -9.086 13.386 16.485 hybrid contribution 0.226 0.596 -1.589 1.712 sum -2.940 -8.490 11.796 14.828 Atomic orbital electron populations 1.20126 0.87266 1.03579 1.02337 1.21243 0.98659 0.90521 1.05888 1.25647 0.82978 1.01043 1.05977 1.84822 1.29062 1.15660 1.65256 1.74285 1.20908 0.91027 1.12312 1.23288 0.89621 0.96816 1.09916 1.16784 0.85326 0.82587 0.76108 1.90699 1.17843 1.82015 1.51853 1.45698 1.10397 1.04732 1.72079 1.20804 0.98248 0.80378 0.95905 0.89841 1.22212 1.02045 1.01191 0.96806 1.21928 0.98848 0.99139 0.95456 1.21635 0.98319 0.87721 0.95357 0.90508 1.22508 0.99938 1.00354 1.01295 1.60235 1.21759 1.15161 1.31851 1.21669 1.00877 0.95179 0.90370 1.19815 0.85693 0.87422 0.84533 1.90567 1.44783 1.72527 1.37068 1.41864 1.51165 1.12147 1.15356 1.19704 1.33229 0.87073 1.02156 0.87963 1.25228 0.97308 1.00243 0.95281 1.69627 1.41290 1.37662 1.06015 0.85852 0.78322 0.82123 0.78386 1.19181 1.20876 1.20839 0.91254 0.91439 0.89773 0.76822 0.74713 0.92140 0.91876 0.92599 0.90257 0.91143 0.92384 0.92305 0.92561 0.83299 0.90285 0.94137 0.77746 0.92076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.02 10.01 36.01 0.36 -0.66 16 2 C -0.16 -2.54 6.34 -104.12 -0.66 -3.20 16 3 C -0.08 -1.10 12.24 29.69 0.36 -0.73 16 4 O 0.13 2.32 11.18 17.25 0.19 2.51 16 5 N -0.29 -5.51 11.84 33.29 0.39 -5.11 16 6 C -0.04 -0.67 7.19 -82.53 -0.59 -1.26 16 7 C 0.61 10.75 7.81 -12.11 -0.09 10.66 16 8 O -0.55 -10.37 15.00 5.37 0.08 -10.29 16 9 N -0.68 -10.10 3.80 -54.60 -0.21 -10.31 16 10 C 0.15 1.82 2.57 -67.93 -0.17 1.64 16 11 H 0.08 1.13 7.58 -51.93 -0.39 0.74 16 12 C -0.16 -1.70 9.48 37.16 0.35 -1.35 16 13 C -0.12 -1.12 4.54 -26.73 -0.12 -1.24 16 14 C 0.08 0.91 2.59 -67.71 -0.18 0.74 16 15 H 0.08 0.93 7.80 -51.93 -0.40 0.52 16 16 C -0.18 -1.80 9.16 37.16 0.34 -1.46 16 17 N -0.66 -9.72 3.48 -107.99 -0.38 -10.09 16 18 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 19 C 0.44 10.14 7.82 -10.98 -0.09 10.06 16 20 O -0.57 -14.36 15.78 5.55 0.09 -14.27 16 21 N -0.57 -14.41 5.29 -10.96 -0.06 -14.47 16 22 C -0.29 -8.11 9.68 -14.94 -0.14 -8.25 16 23 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 25 N -0.90 -24.90 13.05 55.50 0.72 -24.18 16 26 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 27 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 28 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 29 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.08 1.29 6.89 -51.93 -0.36 0.93 16 33 H 0.22 2.04 8.06 -52.49 -0.42 1.62 16 34 H 0.41 6.46 7.35 -40.82 -0.30 6.16 16 35 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 37 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.56 8.13 -51.93 -0.42 0.14 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 42 H 0.06 0.61 7.45 -51.93 -0.39 0.23 16 43 H 0.35 5.34 8.17 -39.29 -0.32 5.02 16 44 H 0.08 1.40 8.06 -51.93 -0.42 0.99 16 45 H 0.04 0.66 7.44 -51.93 -0.39 0.27 16 46 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 47 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 396.61 15.07 5.98 5.98 Total: -1.00 -32.38 396.61 -6.00 -38.38 By element: Atomic # 1 Polarization: 26.49 SS G_CDS: -7.03 Total: 19.46 kcal Atomic # 6 Polarization: 7.02 SS G_CDS: -0.76 Total: 6.26 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: 0.48 Total: -64.15 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: 0.36 Total: -22.05 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -32.38 -6.00 -38.38 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135871737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.474 kcal (2) G-P(sol) polarization free energy of solvation -32.382 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.909 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.997 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.379 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.905 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds