Wall clock time and date at job start Tue Mar 31 2020 21:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35314 * 128.04061 * 2 1 4 4 O 1.34014 * 106.66405 * 180.22938 * 3 2 1 5 5 N 1.20900 * 111.85304 * 359.75829 * 4 3 2 6 6 C 1.30989 * 111.43507 * 0.02562 * 5 4 3 7 7 C 1.48331 * 126.93626 * 179.97438 * 6 5 4 8 8 O 1.21494 * 119.99716 * 180.02562 * 7 6 5 9 9 N 1.34778 * 120.00033 * 0.02635 * 7 6 5 10 10 C 1.46500 * 119.99816 * 180.02562 * 9 7 6 11 11 H 1.08991 * 109.47356 * 34.99362 * 10 9 7 12 12 C 1.53002 * 109.46735 * 274.99431 * 10 9 7 13 13 C 1.53001 * 109.47331 * 154.99947 * 10 9 7 14 14 C 1.53000 * 109.46786 * 294.99844 * 13 10 9 15 15 H 1.09003 * 109.46980 * 304.99719 * 14 13 10 16 16 C 1.52995 * 109.47134 * 184.99812 * 14 13 10 17 17 N 1.46906 * 109.47281 * 64.99922 * 14 13 10 18 18 C 1.46901 * 110.99793 * 205.00148 * 17 14 13 19 19 C 1.50701 * 109.46921 * 179.97438 * 18 17 14 20 20 O 1.21294 * 119.99849 * 0.02562 * 19 18 17 21 21 N 1.34780 * 119.99795 * 179.97438 * 19 18 17 22 22 C 1.37101 * 119.99707 * 180.02562 * 21 19 18 23 23 H 1.08002 * 119.99704 * 359.97438 * 22 21 19 24 24 C 1.38941 * 119.99927 * 180.02562 * 22 21 19 25 25 N 1.31417 * 120.00180 * 359.97438 * 24 22 21 26 26 Si 1.86800 * 120.00273 * 180.02562 * 24 22 21 27 27 H 1.48496 * 109.46986 * 359.97438 * 26 24 22 28 28 H 1.48494 * 109.47457 * 119.99901 * 26 24 22 29 29 H 1.48501 * 109.47104 * 239.99973 * 26 24 22 30 30 H 1.09006 * 109.47113 * 270.15258 * 1 2 3 31 31 H 1.09002 * 109.47269 * 30.14451 * 1 2 3 32 32 H 1.08995 * 109.47816 * 150.14778 * 1 2 3 33 33 H 1.08000 * 126.66480 * 359.96698 * 3 2 1 34 34 H 0.96994 * 120.00075 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.47021 * 60.00290 * 12 10 9 36 36 H 1.08999 * 109.46965 * 180.02562 * 12 10 9 37 37 H 1.08997 * 109.47803 * 300.00145 * 12 10 9 38 38 H 1.08996 * 109.47160 * 174.99441 * 13 10 9 39 39 H 1.09003 * 109.46780 * 54.99490 * 13 10 9 40 40 H 1.09003 * 109.47112 * 299.99827 * 16 14 13 41 41 H 1.09001 * 109.47056 * 59.99890 * 16 14 13 42 42 H 1.09000 * 109.47395 * 179.97438 * 16 14 13 43 43 H 1.00899 * 110.99995 * 81.04546 * 17 14 13 44 44 H 1.09002 * 109.47401 * 59.99808 * 18 17 14 45 45 H 1.09001 * 109.46874 * 299.99821 * 18 17 14 46 46 H 0.96995 * 120.00011 * 0.02562 * 21 19 18 47 47 H 0.97000 * 119.99884 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3408 1.0657 0.0000 4 8 3.5888 0.5772 -0.0051 5 7 3.5988 -0.6317 -0.0034 6 6 2.3836 -1.1206 0.0024 7 6 1.9991 -2.5532 0.0056 8 8 0.8254 -2.8671 0.0107 9 7 2.9517 -3.5066 0.0030 10 6 2.5719 -4.9215 0.0056 11 1 1.6625 -5.0547 -0.5803 12 6 2.3236 -5.3802 1.4439 13 6 3.7000 -5.7536 -0.6075 14 6 3.8646 -5.3814 -2.0824 15 1 2.9100 -5.4985 -2.5954 16 6 4.9058 -6.2988 -2.7267 17 7 4.3095 -3.9853 -2.1885 18 6 3.9253 -3.4073 -3.4832 19 6 4.3969 -1.9778 -3.5549 20 8 4.9947 -1.4888 -2.6196 21 7 4.1553 -1.2431 -4.6586 22 6 4.5848 0.0573 -4.7240 23 1 5.1164 0.4929 -3.8909 24 6 4.3352 0.8149 -5.8616 25 7 3.6879 0.2850 -6.8752 26 14 4.9210 2.5864 -5.9511 27 1 5.6196 2.9411 -4.6897 28 1 5.8549 2.7419 -7.0952 29 1 3.7537 3.4849 -6.1395 30 1 -0.3634 0.0027 1.0277 31 1 -0.3634 0.8887 -0.5161 32 1 -0.3634 -0.8912 -0.5115 33 1 2.0560 2.1075 -0.0005 34 1 3.8887 -3.2560 -0.0014 35 1 1.5199 -4.7875 1.8807 36 1 2.0415 -6.4330 1.4459 37 1 3.2330 -5.2471 2.0299 38 1 3.4564 -6.8128 -0.5250 39 1 4.6301 -5.5522 -0.0759 40 1 5.8604 -6.1816 -2.2138 41 1 4.5757 -7.3346 -2.6480 42 1 5.0227 -6.0339 -3.7776 43 1 5.3048 -3.9107 -2.0402 44 1 2.8406 -3.4374 -3.5870 45 1 4.3834 -3.9823 -4.2880 46 1 3.6775 -1.6342 -5.4066 47 1 3.5141 0.8139 -7.6695 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001135871737.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:29:16 Heat of formation + Delta-G solvation = -38.130804 kcal Electronic energy + Delta-G solvation = -31183.420301 eV Core-core repulsion = 26982.575702 eV Total energy + Delta-G solvation = -4200.844599 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -45.90099 -40.80173 -40.06627 -38.45561 -36.23505 -35.73643 -35.46919 -33.60190 -33.20387 -32.43417 -31.10932 -28.99669 -27.94415 -27.62783 -25.77061 -25.63594 -22.58715 -22.46001 -21.76014 -21.26126 -20.95121 -19.85478 -19.17143 -18.59359 -17.72512 -17.48985 -17.19623 -16.67333 -16.34857 -16.08654 -15.77608 -15.52634 -15.50295 -15.19414 -14.71181 -14.65043 -14.28256 -14.12253 -14.06479 -13.91218 -13.58389 -13.49276 -13.36129 -13.22282 -13.09192 -12.95840 -12.79679 -12.61005 -12.36227 -12.25738 -12.16538 -12.10087 -11.74389 -11.65268 -11.44451 -11.16114 -11.11867 -10.26010 -10.22300 -9.97258 -9.94056 -9.16185 -8.42656 -5.89943 0.35870 0.83303 1.36847 1.41391 1.55857 2.08803 2.12423 2.30571 2.31249 2.46968 2.96301 3.15978 3.25022 3.55964 3.69135 3.77638 4.04987 4.06483 4.21745 4.23495 4.29665 4.37089 4.44660 4.48120 4.57551 4.60065 4.61499 4.77275 4.78227 4.83078 4.85591 4.94609 4.96588 5.00151 5.03583 5.22861 5.27879 5.33956 5.37918 5.44322 5.66130 5.94402 6.14443 6.47649 6.58373 6.64787 7.17087 7.18192 7.30602 7.61929 8.17516 8.75586 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.009626 B = 0.004730 C = 0.003502 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2908.161684 B = 5918.737951 C = 7993.628714 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.181 4.181 3 C -0.060 4.060 4 O 0.114 5.886 5 N -0.317 5.317 6 C -0.060 4.060 7 C 0.597 3.403 8 O -0.569 6.569 9 N -0.668 5.668 10 C 0.146 3.854 11 H 0.067 0.933 12 C -0.156 4.156 13 C -0.104 4.104 14 C 0.080 3.920 15 H 0.071 0.929 16 C -0.174 4.174 17 N -0.664 5.664 18 C 0.069 3.931 19 C 0.439 3.561 20 O -0.589 6.589 21 N -0.582 5.582 22 C -0.318 4.318 23 H 0.079 0.921 24 C -0.017 4.017 25 N -0.927 5.927 26 Si 0.989 3.011 27 H -0.270 1.270 28 H -0.274 1.274 29 H -0.272 1.272 30 H 0.086 0.914 31 H 0.091 0.909 32 H 0.059 0.941 33 H 0.263 0.737 34 H 0.412 0.588 35 H 0.037 0.963 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.113 0.887 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.081 0.919 42 H 0.043 0.957 43 H 0.344 0.656 44 H 0.078 0.922 45 H 0.058 0.942 46 H 0.390 0.610 47 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.353 -9.498 12.994 16.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.186 4.186 3 C -0.140 4.140 4 O 0.037 5.963 5 N -0.016 5.016 6 C -0.219 4.219 7 C 0.382 3.618 8 O -0.448 6.448 9 N -0.317 5.317 10 C 0.042 3.958 11 H 0.085 0.915 12 C -0.214 4.214 13 C -0.142 4.142 14 C -0.030 4.030 15 H 0.089 0.911 16 C -0.233 4.233 17 N -0.296 5.296 18 C -0.064 4.064 19 C 0.226 3.774 20 O -0.473 6.473 21 N -0.220 5.220 22 C -0.448 4.448 23 H 0.097 0.903 24 C -0.216 4.216 25 N -0.569 5.569 26 Si 0.813 3.187 27 H -0.195 1.195 28 H -0.200 1.200 29 H -0.198 1.198 30 H 0.104 0.896 31 H 0.110 0.890 32 H 0.078 0.922 33 H 0.279 0.721 34 H 0.249 0.751 35 H 0.056 0.944 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.131 0.869 39 H 0.096 0.904 40 H 0.081 0.919 41 H 0.100 0.900 42 H 0.063 0.937 43 H 0.164 0.836 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.223 0.777 47 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -3.140 -9.750 13.789 17.178 hybrid contribution 0.212 0.737 -1.655 1.824 sum -2.928 -9.013 12.134 15.396 Atomic orbital electron populations 1.20138 0.85608 1.03490 1.03420 1.21711 1.00007 0.90302 1.06574 1.26522 0.81341 1.02719 1.03434 1.84759 1.30755 1.15377 1.65397 1.74267 1.21636 0.91728 1.13961 1.23709 0.90180 0.97861 1.10121 1.16939 0.85503 0.82983 0.76413 1.90671 1.18534 1.82320 1.53299 1.45805 1.09668 1.05672 1.70600 1.21054 0.98563 0.79087 0.97128 0.91498 1.22140 1.01655 1.02348 0.95293 1.21914 0.98148 1.00393 0.93785 1.21734 0.98454 0.85957 0.96808 0.91072 1.22414 0.99509 1.01081 1.00280 1.60234 1.21564 1.17683 1.30120 1.21427 1.00572 0.91806 0.92575 1.20757 0.84197 0.89210 0.83265 1.90549 1.45425 1.73679 1.37631 1.41954 1.52002 1.11898 1.16190 1.19620 1.34462 0.88569 1.02127 0.90309 1.25994 0.97071 1.03936 0.94569 1.69700 1.41759 1.39079 1.06388 0.84921 0.78138 0.77378 0.78263 1.19458 1.19964 1.19750 0.89585 0.89017 0.92205 0.72110 0.75088 0.94373 0.89144 0.91767 0.86904 0.90382 0.91941 0.90048 0.93735 0.83623 0.90415 0.92367 0.77723 0.91639 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.83 10.01 71.24 0.71 -1.12 16 2 C -0.18 -5.80 6.34 -19.54 -0.12 -5.92 16 3 C -0.06 -1.69 12.24 67.14 0.82 -0.87 16 4 O 0.11 4.11 11.18 71.91 0.80 4.91 16 5 N -0.32 -12.49 11.84 -49.52 -0.59 -13.07 16 6 C -0.06 -2.24 7.19 42.96 0.31 -1.93 16 7 C 0.60 21.81 7.81 86.93 0.68 22.48 16 8 O -0.57 -22.29 15.00 -3.70 -0.06 -22.35 16 9 N -0.67 -20.10 3.80 -444.94 -1.69 -21.79 16 10 C 0.15 3.35 2.57 44.99 0.12 3.46 16 11 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 12 C -0.16 -3.00 9.48 71.98 0.68 -2.32 16 13 C -0.10 -1.76 4.54 30.59 0.14 -1.62 16 14 C 0.08 1.67 2.59 44.91 0.12 1.79 16 15 H 0.07 1.60 7.80 -2.39 -0.02 1.59 16 16 C -0.17 -2.99 9.16 71.98 0.66 -2.33 16 17 N -0.66 -19.29 3.48 -495.56 -1.72 -21.01 16 18 C 0.07 2.42 5.97 85.56 0.51 2.93 16 19 C 0.44 20.67 7.82 87.66 0.69 21.35 16 20 O -0.59 -30.67 15.78 -3.07 -0.05 -30.72 16 21 N -0.58 -30.29 5.29 -306.98 -1.62 -31.92 16 22 C -0.32 -18.09 9.68 84.04 0.81 -17.28 16 23 H 0.08 4.78 7.16 -2.91 -0.02 4.76 16 24 C -0.02 -0.92 5.50 84.92 0.47 -0.45 16 25 N -0.93 -51.18 13.05 21.66 0.28 -50.90 16 26 Si 0.99 43.31 29.55 68.60 2.03 45.34 16 27 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 28 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 29 H -0.27 -11.42 7.11 99.48 0.71 -10.71 16 30 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 31 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 32 H 0.06 1.87 6.89 -2.39 -0.02 1.85 16 33 H 0.26 4.26 8.06 -2.91 -0.02 4.24 16 34 H 0.41 12.99 7.35 -92.71 -0.68 12.31 16 35 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 38 H 0.11 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.08 1.27 8.14 -2.39 -0.02 1.25 16 40 H 0.06 1.04 8.13 -2.39 -0.02 1.02 16 41 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 42 H 0.04 0.88 7.45 -2.39 -0.02 0.86 16 43 H 0.34 10.44 8.17 -89.69 -0.73 9.70 16 44 H 0.08 2.78 8.06 -2.39 -0.02 2.76 16 45 H 0.06 1.85 7.44 -2.39 -0.02 1.83 16 46 H 0.39 19.87 7.90 -92.71 -0.73 19.14 16 47 H 0.27 14.20 8.31 -92.71 -0.77 13.43 16 Total: -1.00 -73.08 396.61 2.85 -70.23 By element: Atomic # 1 Polarization: 54.23 SS G_CDS: -1.12 Total: 53.10 kcal Atomic # 6 Polarization: 11.59 SS G_CDS: 6.59 Total: 18.18 kcal Atomic # 7 Polarization: -133.35 SS G_CDS: -5.34 Total: -138.69 kcal Atomic # 8 Polarization: -48.86 SS G_CDS: 0.70 Total: -48.16 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Total: -73.08 2.85 -70.23 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001135871737.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.101 kcal (2) G-P(sol) polarization free energy of solvation -73.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.232 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds