Wall clock time and date at job start Tue Mar 31 2020 21:49:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29950 * 126.28343 * 2 1 4 4 O 1.21301 * 110.24733 * 179.97438 * 3 2 1 5 5 C 1.33638 * 109.81285 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.55038 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47025 * 270.02713 * 6 5 4 8 8 C 1.50703 * 109.47025 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99837 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00239 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00421 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47579 * 179.97438 * 11 10 8 13 13 H 1.08998 * 108.56595 * 59.99662 * 12 11 10 14 14 C 1.46916 * 108.62010 * 177.94056 * 12 11 10 15 15 N 1.50119 * 106.77618 * 177.91942 * 14 12 11 16 16 C 1.36940 * 120.63395 * 111.32497 * 15 14 12 17 17 H 1.07996 * 119.99806 * 155.65511 * 16 15 14 18 18 C 1.38814 * 119.99976 * 335.65991 * 16 15 14 19 19 N 1.31608 * 120.00314 * 340.74195 * 18 16 15 20 20 Si 1.86808 * 119.99593 * 160.74102 * 18 16 15 21 21 H 1.48500 * 109.47099 * 59.99987 * 20 18 16 22 22 H 1.48502 * 109.46687 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47165 * 299.99710 * 20 18 16 24 24 C 1.43417 * 118.72727 * 291.35212 * 15 14 12 25 25 C 1.55326 * 116.24293 * 89.35182 * 24 15 14 26 26 C 1.55187 * 108.87544 * 319.46229 * 25 24 15 27 27 O 1.39806 * 110.45627 * 322.14183 * 26 25 24 28 28 N 1.31124 * 106.89923 * 0.02562 * 5 4 3 29 29 H 1.09003 * 109.46532 * 90.03291 * 1 2 3 30 30 H 1.08997 * 109.47010 * 210.02299 * 1 2 3 31 31 H 1.08998 * 109.47622 * 330.03007 * 1 2 3 32 32 H 1.09002 * 109.46726 * 30.02316 * 6 5 4 33 33 H 1.09002 * 109.47195 * 150.02541 * 6 5 4 34 34 H 1.08994 * 109.47104 * 299.99714 * 7 6 5 35 35 H 1.08998 * 109.47385 * 60.00378 * 7 6 5 36 36 H 0.97006 * 119.99988 * 359.97438 * 10 8 7 37 37 H 1.09009 * 109.46666 * 299.99881 * 11 10 8 38 38 H 1.08994 * 109.47410 * 59.99042 * 11 10 8 39 39 H 1.08998 * 109.98992 * 297.23602 * 14 12 11 40 40 H 1.08995 * 109.99355 * 58.50846 * 14 12 11 41 41 H 0.97006 * 120.00340 * 179.97438 * 19 18 16 42 42 H 1.09001 * 108.12478 * 211.10782 * 24 15 14 43 43 H 1.08994 * 108.12941 * 327.59298 * 24 15 14 44 44 H 1.09010 * 109.57345 * 79.27622 * 25 24 15 45 45 H 1.09000 * 109.57378 * 199.64466 * 25 24 15 46 46 H 1.09003 * 109.25849 * 82.41816 * 26 25 24 47 47 H 1.08996 * 109.26088 * 201.86421 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6210 0.0015 6 6 4.7970 -1.4368 0.0018 7 6 5.2259 -1.7134 -1.4406 8 6 6.4927 -2.5297 -1.4403 9 8 7.0025 -2.8575 -0.3898 10 7 7.0596 -2.8945 -2.6073 11 6 8.2907 -3.6886 -2.6070 12 6 8.7198 -3.9650 -4.0494 13 1 8.8927 -3.0118 -4.5488 14 6 9.9807 -4.7187 -4.0274 15 7 10.3354 -5.0114 -5.4564 16 6 11.4171 -4.4112 -6.0439 17 1 11.9034 -4.8803 -6.8863 18 6 11.8884 -3.2000 -5.5564 19 7 11.1122 -2.4446 -4.8088 20 14 13.6246 -2.6422 -5.9617 21 1 13.7739 -2.5190 -7.4340 22 1 13.8821 -1.3248 -5.3265 23 1 14.5976 -3.6390 -5.4471 24 6 9.5195 -5.9312 -6.1948 25 6 8.3092 -5.3201 -6.9526 26 6 7.6487 -4.2396 -6.0556 27 8 7.6601 -4.6423 -4.7169 28 7 2.3031 -1.0840 0.0009 29 1 -0.3632 -0.0006 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5133 32 1 5.5843 -0.8849 0.5154 33 1 4.6208 -2.3817 0.5159 34 1 4.4387 -2.2652 -1.9542 35 1 5.4022 -0.7686 -1.9548 36 1 6.6520 -2.6320 -3.4475 37 1 9.0782 -3.1376 -2.0925 38 1 8.1136 -4.6335 -2.0935 39 1 10.7647 -4.1199 -3.5640 40 1 9.8487 -5.6499 -3.4766 41 1 11.4417 -1.5983 -4.4679 42 1 10.1535 -6.4389 -6.9217 43 1 9.1411 -6.6815 -5.5006 44 1 8.6524 -4.8637 -7.8812 45 1 7.5842 -6.1031 -7.1748 46 1 8.1991 -3.3040 -6.1553 47 1 6.6186 -4.0860 -6.3771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001150054641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:21 Heat of formation + Delta-G solvation = 10.979091 kcal Electronic energy + Delta-G solvation = -29480.613391 eV Core-core repulsion = 25281.898357 eV Total energy + Delta-G solvation = -4198.715034 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -45.84761 -39.77024 -38.81681 -36.39662 -35.13655 -34.93240 -34.47159 -32.30338 -31.79573 -31.11906 -29.47298 -28.71134 -26.55882 -25.37475 -24.79751 -23.68225 -22.53261 -21.49027 -20.84998 -20.06344 -19.61778 -18.41815 -17.71751 -17.20973 -16.94376 -16.15913 -15.78442 -15.54107 -15.13728 -14.85307 -14.49094 -14.36392 -14.10151 -13.95063 -13.89818 -13.63960 -13.24593 -13.06471 -12.94619 -12.73875 -12.59217 -12.49323 -12.23464 -11.97451 -11.60639 -11.50039 -11.42206 -11.28716 -11.24664 -10.86747 -10.77538 -10.52520 -10.22466 -10.19047 -10.00500 -9.79099 -9.68304 -9.53686 -8.84987 -8.74824 -8.53554 -6.85533 -5.95649 -3.34104 0.85267 1.92377 2.49560 2.75599 3.27197 3.31890 3.38587 3.40625 3.50860 3.76773 4.40778 4.45268 4.61120 4.66957 4.73457 4.96191 5.00631 5.07002 5.19451 5.21230 5.25103 5.29828 5.47247 5.55414 5.66064 5.68012 5.74402 5.78324 5.88337 5.96071 6.10172 6.28885 6.37298 6.43407 6.51098 6.63293 6.66649 6.77893 6.86936 6.92546 7.08073 7.28985 7.68629 7.71597 7.89436 8.08179 8.28949 8.37081 9.03883 9.71960 10.26178 11.13480 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.002207 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.688977 B =12686.224329 C =13390.337185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.166 3.834 3 N -0.388 5.388 4 O 0.077 5.923 5 C 0.191 3.809 6 C -0.012 4.012 7 C -0.139 4.139 8 C 0.514 3.486 9 O -0.548 6.548 10 N -0.711 5.711 11 C 0.121 3.879 12 C 0.060 3.940 13 H 0.107 0.893 14 C 0.143 3.857 15 N -0.587 5.587 16 C -0.249 4.249 17 H 0.069 0.931 18 C 0.002 3.998 19 N -0.908 5.908 20 Si 0.905 3.095 21 H -0.284 1.284 22 H -0.290 1.290 23 H -0.284 1.284 24 C 0.161 3.839 25 C -0.172 4.172 26 C 0.067 3.933 27 O -0.370 6.370 28 N -0.482 5.482 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.086 0.914 32 H 0.112 0.888 33 H 0.120 0.880 34 H 0.102 0.898 35 H 0.101 0.899 36 H 0.402 0.598 37 H 0.079 0.921 38 H 0.063 0.937 39 H 0.104 0.896 40 H 0.019 0.981 41 H 0.256 0.744 42 H 0.033 0.967 43 H 0.031 0.969 44 H 0.056 0.944 45 H 0.049 0.951 46 H 0.063 0.937 47 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.504 3.285 6.185 17.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.107 4.107 3 N -0.097 5.097 4 O 0.020 5.980 5 C -0.030 4.030 6 C -0.051 4.051 7 C -0.181 4.181 8 C 0.299 3.701 9 O -0.427 6.427 10 N -0.360 5.360 11 C -0.003 4.003 12 C 0.001 3.999 13 H 0.125 0.875 14 C 0.018 3.982 15 N -0.307 5.307 16 C -0.378 4.378 17 H 0.087 0.913 18 C -0.196 4.196 19 N -0.553 5.553 20 Si 0.735 3.265 21 H -0.211 1.211 22 H -0.216 1.216 23 H -0.211 1.211 24 C 0.032 3.968 25 C -0.213 4.213 26 C -0.011 4.011 27 O -0.288 6.288 28 N -0.216 5.216 29 H 0.107 0.893 30 H 0.110 0.890 31 H 0.104 0.896 32 H 0.131 0.869 33 H 0.138 0.862 34 H 0.120 0.880 35 H 0.119 0.881 36 H 0.236 0.764 37 H 0.098 0.902 38 H 0.081 0.919 39 H 0.122 0.878 40 H 0.038 0.962 41 H 0.066 0.934 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.075 0.925 45 H 0.068 0.932 46 H 0.081 0.919 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -16.809 3.559 7.093 18.588 hybrid contribution 0.887 0.679 -0.955 1.470 sum -15.922 4.238 6.138 17.583 Atomic orbital electron populations 1.20138 0.82950 1.04634 1.04347 1.25942 1.00650 0.83579 1.00528 1.74653 0.89441 1.23971 1.21669 1.85307 1.22294 1.24881 1.65560 1.28891 0.97028 0.82093 0.94964 1.19991 0.87694 0.99052 0.98401 1.21621 0.97321 1.02211 0.96914 1.20201 0.85407 0.80312 0.84182 1.90713 1.64460 1.56339 1.31175 1.45908 1.27535 1.54437 1.08165 1.21736 0.85456 0.94829 0.98326 1.22211 0.88185 0.98751 0.90745 0.87511 1.20740 0.95435 0.96187 0.85844 1.44093 1.28946 1.51098 1.06601 1.19223 1.03778 1.00545 1.14303 0.91347 1.24896 0.98807 0.95213 1.00641 1.69844 1.34373 1.11880 1.39247 0.86327 0.84808 0.77491 0.77894 1.21054 1.21636 1.21070 1.20365 0.90505 0.91918 0.94027 1.23578 0.99474 0.98889 0.99378 1.22377 0.98068 0.97773 0.82886 1.87554 1.51375 1.68634 1.21268 1.71935 0.99752 1.29346 1.20602 0.89283 0.89001 0.89554 0.86922 0.86206 0.87992 0.88080 0.76445 0.90236 0.91897 0.87814 0.96247 0.93403 0.94914 0.95021 0.92502 0.93183 0.91859 0.93111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.17 1.76 8.22 -156.37 -1.28 0.47 16 3 N -0.39 -4.60 12.16 30.90 0.38 -4.23 16 4 O 0.08 0.87 11.31 18.11 0.20 1.07 16 5 C 0.19 1.96 7.77 -13.06 -0.10 1.85 16 6 C -0.01 -0.11 5.13 -27.88 -0.14 -0.25 16 7 C -0.14 -1.27 5.68 -27.88 -0.16 -1.43 16 8 C 0.51 6.86 7.83 -10.99 -0.09 6.77 16 9 O -0.55 -9.15 15.98 5.56 0.09 -9.06 16 10 N -0.71 -10.08 5.41 -60.29 -0.33 -10.41 16 11 C 0.12 2.07 5.25 -4.04 -0.02 2.05 16 12 C 0.06 1.15 1.98 -29.65 -0.06 1.09 16 13 H 0.11 2.32 5.23 -51.93 -0.27 2.05 16 14 C 0.14 3.12 4.71 -4.93 -0.02 3.10 16 15 N -0.59 -13.68 2.61 -174.51 -0.46 -14.13 16 16 C -0.25 -6.34 9.62 -15.06 -0.14 -6.49 16 17 H 0.07 1.75 7.88 -52.49 -0.41 1.33 16 18 C 0.00 0.05 4.92 -17.43 -0.09 -0.03 16 19 N -0.91 -23.04 9.56 55.49 0.53 -22.51 16 20 Si 0.90 20.50 29.60 -169.99 -5.03 15.47 16 21 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 22 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 23 H -0.28 -6.50 7.11 56.52 0.40 -6.09 16 24 C 0.16 3.30 5.32 -4.44 -0.02 3.28 16 25 C -0.17 -3.11 6.75 -24.34 -0.16 -3.27 16 26 C 0.07 1.19 6.38 38.32 0.24 1.43 16 27 O -0.37 -6.85 9.44 -32.41 -0.31 -7.16 16 28 N -0.48 -5.47 11.55 -9.87 -0.11 -5.59 16 29 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.09 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.09 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.11 0.93 8.10 -51.93 -0.42 0.51 16 33 H 0.12 1.09 8.10 -51.93 -0.42 0.67 16 34 H 0.10 0.84 8.14 -51.93 -0.42 0.41 16 35 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.40 5.08 8.26 -40.82 -0.34 4.74 16 37 H 0.08 1.45 8.14 -51.92 -0.42 1.03 16 38 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 39 H 0.10 2.49 6.03 -51.93 -0.31 2.18 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.26 6.44 8.31 -40.82 -0.34 6.10 16 42 H 0.03 0.67 7.96 -51.93 -0.41 0.25 16 43 H 0.03 0.64 7.98 -51.93 -0.41 0.22 16 44 H 0.06 1.04 8.14 -51.92 -0.42 0.61 16 45 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.06 1.27 6.66 -51.93 -0.35 0.93 16 47 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 LS Contribution 383.09 15.07 5.77 5.77 Total: -1.00 -29.62 383.09 -8.07 -37.69 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -7.14 Total: 4.52 kcal Atomic # 6 Polarization: 10.22 SS G_CDS: -1.67 Total: 8.55 kcal Atomic # 7 Polarization: -56.88 SS G_CDS: 0.01 Total: -56.87 kcal Atomic # 8 Polarization: -15.13 SS G_CDS: -0.01 Total: -15.14 kcal Atomic # 14 Polarization: 20.50 SS G_CDS: -5.03 Total: 15.47 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -29.62 -8.07 -37.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150054641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.672 kcal (2) G-P(sol) polarization free energy of solvation -29.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds