Wall clock time and date at job start Tue Mar 31 2020 21:49:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29950 * 126.28343 * 2 1 4 4 O 1.21301 * 110.24733 * 179.97438 * 3 2 1 5 5 C 1.33638 * 109.81285 * 359.97438 * 4 3 2 6 6 C 1.50703 * 126.55038 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.47025 * 270.02713 * 6 5 4 8 8 C 1.50703 * 109.47025 * 180.02562 * 7 6 5 9 9 O 1.21282 * 119.99837 * 359.97438 * 8 7 6 10 10 N 1.34770 * 120.00239 * 180.02562 * 8 7 6 11 11 C 1.46501 * 120.00421 * 180.02562 * 10 8 7 12 12 C 1.53001 * 109.47579 * 179.97438 * 11 10 8 13 13 H 1.08998 * 108.56595 * 59.99662 * 12 11 10 14 14 C 1.46916 * 108.62010 * 177.94056 * 12 11 10 15 15 N 1.50119 * 106.77618 * 177.91942 * 14 12 11 16 16 C 1.36940 * 120.63395 * 111.32497 * 15 14 12 17 17 H 1.07996 * 119.99806 * 155.65511 * 16 15 14 18 18 C 1.38814 * 119.99976 * 335.65991 * 16 15 14 19 19 N 1.31608 * 120.00314 * 340.74195 * 18 16 15 20 20 Si 1.86808 * 119.99593 * 160.74102 * 18 16 15 21 21 H 1.48500 * 109.47099 * 59.99987 * 20 18 16 22 22 H 1.48502 * 109.46687 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47165 * 299.99710 * 20 18 16 24 24 C 1.43417 * 118.72727 * 291.35212 * 15 14 12 25 25 C 1.55326 * 116.24293 * 89.35182 * 24 15 14 26 26 C 1.55187 * 108.87544 * 319.46229 * 25 24 15 27 27 O 1.39806 * 110.45627 * 322.14183 * 26 25 24 28 28 N 1.31124 * 106.89923 * 0.02562 * 5 4 3 29 29 H 1.09003 * 109.46532 * 90.03291 * 1 2 3 30 30 H 1.08997 * 109.47010 * 210.02299 * 1 2 3 31 31 H 1.08998 * 109.47622 * 330.03007 * 1 2 3 32 32 H 1.09002 * 109.46726 * 30.02316 * 6 5 4 33 33 H 1.09002 * 109.47195 * 150.02541 * 6 5 4 34 34 H 1.08994 * 109.47104 * 299.99714 * 7 6 5 35 35 H 1.08998 * 109.47385 * 60.00378 * 7 6 5 36 36 H 0.97006 * 119.99988 * 359.97438 * 10 8 7 37 37 H 1.09009 * 109.46666 * 299.99881 * 11 10 8 38 38 H 1.08994 * 109.47410 * 59.99042 * 11 10 8 39 39 H 1.08998 * 109.98992 * 297.23602 * 14 12 11 40 40 H 1.08995 * 109.99355 * 58.50846 * 14 12 11 41 41 H 0.97006 * 120.00340 * 179.97438 * 19 18 16 42 42 H 1.09001 * 108.12478 * 211.10782 * 24 15 14 43 43 H 1.08994 * 108.12941 * 327.59298 * 24 15 14 44 44 H 1.09010 * 109.57345 * 79.27622 * 25 24 15 45 45 H 1.09000 * 109.57378 * 199.64466 * 25 24 15 46 46 H 1.09003 * 109.25849 * 82.41816 * 26 25 24 47 47 H 1.08996 * 109.26088 * 201.86421 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 0.0005 5 6 3.5299 -0.6210 0.0015 6 6 4.7970 -1.4368 0.0018 7 6 5.2259 -1.7134 -1.4406 8 6 6.4927 -2.5297 -1.4403 9 8 7.0025 -2.8575 -0.3898 10 7 7.0596 -2.8945 -2.6073 11 6 8.2907 -3.6886 -2.6070 12 6 8.7198 -3.9650 -4.0494 13 1 8.8927 -3.0118 -4.5488 14 6 9.9807 -4.7187 -4.0274 15 7 10.3354 -5.0114 -5.4564 16 6 11.4171 -4.4112 -6.0439 17 1 11.9034 -4.8803 -6.8863 18 6 11.8884 -3.2000 -5.5564 19 7 11.1122 -2.4446 -4.8088 20 14 13.6246 -2.6422 -5.9617 21 1 13.7739 -2.5190 -7.4340 22 1 13.8821 -1.3248 -5.3265 23 1 14.5976 -3.6390 -5.4471 24 6 9.5195 -5.9312 -6.1948 25 6 8.3092 -5.3201 -6.9526 26 6 7.6487 -4.2396 -6.0556 27 8 7.6601 -4.6423 -4.7169 28 7 2.3031 -1.0840 0.0009 29 1 -0.3632 -0.0006 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5133 32 1 5.5843 -0.8849 0.5154 33 1 4.6208 -2.3817 0.5159 34 1 4.4387 -2.2652 -1.9542 35 1 5.4022 -0.7686 -1.9548 36 1 6.6520 -2.6320 -3.4475 37 1 9.0782 -3.1376 -2.0925 38 1 8.1136 -4.6335 -2.0935 39 1 10.7647 -4.1199 -3.5640 40 1 9.8487 -5.6499 -3.4766 41 1 11.4417 -1.5983 -4.4679 42 1 10.1535 -6.4389 -6.9217 43 1 9.1411 -6.6815 -5.5006 44 1 8.6524 -4.8637 -7.8812 45 1 7.5842 -6.1031 -7.1748 46 1 8.1991 -3.3040 -6.1553 47 1 6.6186 -4.0860 -6.3771 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001150054641.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:49:20 Heat of formation + Delta-G solvation = -9.413050 kcal Electronic energy + Delta-G solvation = -29481.497661 eV Core-core repulsion = 25281.898357 eV Total energy + Delta-G solvation = -4199.599304 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -46.64996 -41.05119 -40.21969 -37.18452 -36.77474 -36.04859 -35.56599 -33.84088 -33.05371 -32.44039 -30.32580 -30.04432 -27.79022 -27.04728 -26.07709 -24.56676 -24.01765 -22.36908 -22.28539 -21.32744 -21.13266 -19.26835 -18.90870 -18.54175 -18.03982 -17.67074 -16.99802 -16.72062 -16.61516 -16.18914 -15.88597 -15.49822 -15.44987 -15.21386 -14.81712 -14.52524 -14.47134 -14.31562 -14.14106 -13.74182 -13.72657 -13.50376 -13.44173 -13.26661 -13.20781 -12.90941 -12.59157 -12.48522 -12.33472 -12.29707 -12.23141 -12.07102 -11.91197 -11.75715 -11.35275 -11.16572 -11.06400 -10.83692 -10.53899 -10.24470 -10.00632 -8.69447 -7.87962 -5.28156 0.05671 1.14655 1.49408 1.53322 1.58008 1.68288 1.70143 2.30579 2.53771 2.69421 3.06031 3.15272 3.29297 3.53622 3.63369 3.88153 4.03430 4.10457 4.21311 4.30588 4.39746 4.46393 4.46946 4.53561 4.58355 4.60308 4.63167 4.77488 4.80184 4.81834 4.83684 4.92327 4.94532 5.01779 5.10563 5.11027 5.20642 5.20856 5.36453 5.43315 5.48241 5.55180 5.70056 6.38319 6.54177 6.61493 7.10699 7.13047 7.28219 7.85244 8.37937 9.17716 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017477 B = 0.002207 C = 0.002091 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.688977 B =12686.224329 C =13390.337185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C 0.163 3.837 3 N -0.411 5.411 4 O 0.068 5.932 5 C 0.199 3.801 6 C -0.007 4.007 7 C -0.126 4.126 8 C 0.515 3.485 9 O -0.583 6.583 10 N -0.708 5.708 11 C 0.133 3.867 12 C 0.078 3.922 13 H 0.085 0.915 14 C 0.144 3.856 15 N -0.601 5.601 16 C -0.264 4.264 17 H 0.061 0.939 18 C -0.036 4.036 19 N -0.915 5.915 20 Si 0.958 3.042 21 H -0.282 1.282 22 H -0.294 1.294 23 H -0.286 1.286 24 C 0.154 3.846 25 C -0.166 4.166 26 C 0.068 3.932 27 O -0.366 6.366 28 N -0.501 5.501 29 H 0.103 0.897 30 H 0.102 0.898 31 H 0.097 0.903 32 H 0.119 0.881 33 H 0.119 0.881 34 H 0.119 0.881 35 H 0.122 0.878 36 H 0.411 0.589 37 H 0.063 0.937 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.024 0.976 41 H 0.251 0.749 42 H 0.029 0.971 43 H 0.034 0.966 44 H 0.052 0.948 45 H 0.077 0.923 46 H 0.037 0.963 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.382 3.364 5.749 19.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 N -0.123 5.123 4 O 0.013 5.987 5 C -0.022 4.022 6 C -0.046 4.046 7 C -0.167 4.167 8 C 0.302 3.698 9 O -0.464 6.464 10 N -0.359 5.359 11 C 0.008 3.992 12 C 0.019 3.981 13 H 0.103 0.897 14 C 0.019 3.981 15 N -0.323 5.323 16 C -0.394 4.394 17 H 0.079 0.921 18 C -0.232 4.232 19 N -0.561 5.561 20 Si 0.788 3.212 21 H -0.208 1.208 22 H -0.220 1.220 23 H -0.213 1.213 24 C 0.026 3.974 25 C -0.206 4.206 26 C -0.010 4.010 27 O -0.284 6.284 28 N -0.235 5.235 29 H 0.122 0.878 30 H 0.121 0.879 31 H 0.116 0.884 32 H 0.137 0.863 33 H 0.137 0.863 34 H 0.137 0.863 35 H 0.140 0.860 36 H 0.247 0.753 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.096 0.904 40 H 0.042 0.958 41 H 0.061 0.939 42 H 0.047 0.953 43 H 0.053 0.947 44 H 0.071 0.929 45 H 0.096 0.904 46 H 0.055 0.945 47 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -18.703 3.632 6.636 20.175 hybrid contribution 1.463 0.581 -0.824 1.777 sum -17.239 4.214 5.812 18.674 Atomic orbital electron populations 1.20355 0.80424 1.05749 1.05594 1.26666 1.02179 0.83010 0.99137 1.74653 0.89746 1.24767 1.23114 1.85282 1.22299 1.25207 1.65923 1.29031 0.97146 0.81889 0.94086 1.19983 0.87350 0.98913 0.98364 1.21558 0.95180 1.02491 0.97452 1.20845 0.86098 0.79723 0.83090 1.90703 1.65701 1.57661 1.32314 1.45816 1.26651 1.54230 1.09184 1.21351 0.86431 0.94887 0.96509 1.21759 0.87561 0.97078 0.91693 0.89725 1.20681 0.95983 0.96189 0.85263 1.44211 1.29384 1.51424 1.07239 1.19349 1.04885 1.00740 1.14408 0.92082 1.25450 1.01227 0.95464 1.01073 1.69969 1.34913 1.11661 1.39537 0.85497 0.81602 0.76614 0.77536 1.20819 1.21994 1.21312 1.20478 0.91224 0.91593 0.94088 1.23498 0.98817 0.99598 0.98732 1.22422 0.99718 0.96373 0.82440 1.87553 1.50618 1.68588 1.21681 1.71964 1.00251 1.29890 1.21431 0.87838 0.87909 0.88397 0.86318 0.86310 0.86320 0.86000 0.75317 0.91873 0.92329 0.90365 0.95829 0.93925 0.95286 0.94709 0.92888 0.90402 0.94456 0.89509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.69 10.51 71.24 0.75 0.06 16 2 C 0.16 3.21 8.22 138.46 1.14 4.34 16 3 N -0.41 -9.31 12.16 -60.32 -0.73 -10.05 16 4 O 0.07 1.46 11.31 74.88 0.85 2.30 16 5 C 0.20 3.79 7.77 88.38 0.69 4.48 16 6 C -0.01 -0.11 5.13 29.85 0.15 0.04 16 7 C -0.13 -2.02 5.68 29.85 0.17 -1.85 16 8 C 0.51 13.08 7.83 87.66 0.69 13.76 16 9 O -0.58 -19.14 15.98 -3.04 -0.05 -19.19 16 10 N -0.71 -19.32 5.41 -463.06 -2.51 -21.83 16 11 C 0.13 4.58 5.25 86.38 0.45 5.03 16 12 C 0.08 3.00 1.98 28.71 0.06 3.06 16 13 H 0.09 3.72 5.23 -2.39 -0.01 3.70 16 14 C 0.14 6.36 4.71 83.78 0.39 6.75 16 15 N -0.60 -28.19 2.61 -706.03 -1.84 -30.04 16 16 C -0.26 -13.58 9.62 84.03 0.81 -12.77 16 17 H 0.06 3.16 7.88 -2.91 -0.02 3.14 16 18 C -0.04 -1.82 4.92 84.86 0.42 -1.40 16 19 N -0.92 -47.14 9.56 21.65 0.21 -46.93 16 20 Si 0.96 42.50 29.60 68.60 2.03 44.53 16 21 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 22 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 23 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 24 C 0.15 6.22 5.32 87.75 0.47 6.69 16 25 C -0.17 -5.66 6.75 32.14 0.22 -5.44 16 26 C 0.07 2.29 6.38 72.73 0.46 2.76 16 27 O -0.37 -12.98 9.44 -138.88 -1.31 -14.30 16 28 N -0.50 -10.60 11.55 -303.21 -3.50 -14.10 16 29 H 0.10 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.10 0.88 8.14 -2.39 -0.02 0.87 16 31 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 32 H 0.12 1.80 8.10 -2.39 -0.02 1.79 16 33 H 0.12 2.00 8.10 -2.39 -0.02 1.99 16 34 H 0.12 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.12 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.41 9.67 8.26 -92.70 -0.77 8.90 16 37 H 0.06 2.37 8.14 -2.38 -0.02 2.35 16 38 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 39 H 0.08 3.87 6.03 -2.39 -0.01 3.86 16 40 H 0.02 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.25 12.82 8.31 -92.70 -0.77 12.05 16 42 H 0.03 1.17 7.96 -2.39 -0.02 1.15 16 43 H 0.03 1.36 7.98 -2.39 -0.02 1.34 16 44 H 0.05 1.85 8.14 -2.38 -0.02 1.83 16 45 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 46 H 0.04 1.47 6.66 -2.39 -0.02 1.45 16 47 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 Total: -1.00 -63.68 383.09 0.22 -63.45 By element: Atomic # 1 Polarization: 20.41 SS G_CDS: 0.23 Total: 20.63 kcal Atomic # 6 Polarization: 18.65 SS G_CDS: 6.86 Total: 25.51 kcal Atomic # 7 Polarization: -114.56 SS G_CDS: -8.38 Total: -122.94 kcal Atomic # 8 Polarization: -30.67 SS G_CDS: -0.51 Total: -31.18 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -63.68 0.22 -63.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001150054641.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.040 kcal (2) G-P(sol) polarization free energy of solvation -63.677 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.453 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds