Wall clock time and date at job start Tue Mar 31 2020 22:28:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50707 * 109.46952 * 2 1 4 4 O 1.33490 * 126.82724 * 269.97563 * 3 2 1 5 5 N 1.20666 * 113.15380 * 180.02562 * 4 3 2 6 6 C 1.30015 * 112.29823 * 359.68552 * 5 4 3 7 7 C 1.50698 * 127.33370 * 180.29834 * 6 5 4 8 8 C 1.37355 * 126.82576 * 89.99887 * 3 2 1 9 9 C 1.47398 * 128.56778 * 359.97438 * 8 3 2 10 10 O 1.21610 * 120.00362 * 89.72229 * 9 8 3 11 11 N 1.34784 * 119.99800 * 269.99573 * 9 8 3 12 12 C 1.46499 * 119.99893 * 179.72628 * 11 9 8 13 13 C 1.53003 * 109.46708 * 180.02562 * 12 11 9 14 14 C 1.53000 * 109.46990 * 180.02562 * 13 12 11 15 15 N 1.46903 * 109.47252 * 179.97438 * 14 13 12 16 16 C 1.46898 * 110.99849 * 179.97438 * 15 14 13 17 17 C 1.50702 * 109.46842 * 179.97438 * 16 15 14 18 18 O 1.21291 * 119.99990 * 0.02562 * 17 16 15 19 19 N 1.34777 * 119.99816 * 179.97438 * 17 16 15 20 20 C 1.37098 * 120.00185 * 179.97438 * 19 17 16 21 21 H 1.08005 * 119.99292 * 0.02562 * 20 19 17 22 22 C 1.38943 * 120.00256 * 180.02562 * 20 19 17 23 23 N 1.31407 * 119.99985 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 119.99930 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47314 * 89.99911 * 24 22 20 26 26 H 1.48502 * 109.46930 * 210.00007 * 24 22 20 27 27 H 1.48498 * 109.47137 * 329.99545 * 24 22 20 28 28 H 1.08998 * 109.47280 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47632 * 300.00234 * 1 2 3 30 30 H 1.09007 * 109.47036 * 59.99829 * 1 2 3 31 31 H 1.08995 * 109.47004 * 240.00133 * 2 1 3 32 32 H 1.08996 * 109.47208 * 119.99721 * 2 1 3 33 33 H 1.08998 * 109.47329 * 270.19740 * 7 6 5 34 34 H 1.09002 * 109.47139 * 30.19667 * 7 6 5 35 35 H 1.08997 * 109.47469 * 150.19695 * 7 6 5 36 36 H 0.97005 * 119.99846 * 359.72416 * 11 9 8 37 37 H 1.08998 * 109.47134 * 299.99552 * 12 11 9 38 38 H 1.08994 * 109.47397 * 59.99843 * 12 11 9 39 39 H 1.09000 * 109.47195 * 299.99415 * 13 12 11 40 40 H 1.08994 * 109.47584 * 59.99634 * 13 12 11 41 41 H 1.09005 * 109.47033 * 299.99952 * 14 13 12 42 42 H 1.08999 * 109.47677 * 59.99180 * 14 13 12 43 43 H 1.00897 * 110.99542 * 56.04230 * 15 14 13 44 44 H 1.08999 * 109.47532 * 300.00173 * 16 15 14 45 45 H 1.09001 * 109.47554 * 60.00131 * 16 15 14 46 46 H 0.97003 * 120.00483 * 0.02562 * 19 17 16 47 47 H 0.97006 * 120.00333 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 8 2.2995 2.1751 -1.0685 5 7 2.6906 3.2804 -0.7833 6 6 2.7492 3.4665 0.5021 7 6 3.1822 4.7153 1.2260 8 6 2.3067 2.1971 1.0995 9 6 2.1823 1.8468 2.5258 10 8 3.1221 1.3463 3.1133 11 7 1.0251 2.0762 3.1776 12 6 0.8994 1.7226 4.5937 13 6 -0.5033 2.0835 5.0869 14 6 -0.6343 1.7147 6.5660 15 7 -1.9809 2.0617 7.0397 16 6 -2.1437 1.7204 8.4592 17 6 -3.5338 2.0905 8.9085 18 8 -4.3123 2.5891 8.1234 19 7 -3.9121 1.8666 10.1826 20 6 -5.1765 2.2037 10.5915 21 1 -5.8695 2.6484 9.8926 22 6 -5.5664 1.9733 11.9051 23 7 -4.7231 1.4327 12.7556 24 14 -7.2894 2.4321 12.4620 25 1 -8.2013 1.2792 12.2510 26 1 -7.2655 2.7868 13.9039 27 1 -7.7711 3.5950 11.6742 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.2572 4.6789 1.4023 34 1 2.9429 5.5885 0.6191 35 1 2.6597 4.7819 2.1802 36 1 0.2754 2.4755 2.7090 37 1 1.0631 0.6520 4.7167 38 1 1.6412 2.2725 5.1727 39 1 -0.6674 3.1540 4.9638 40 1 -1.2448 1.5333 4.5078 41 1 -0.4699 0.6442 6.6895 42 1 0.1072 2.2652 7.1449 43 1 -2.6886 1.6141 6.4769 44 1 -1.9904 0.6499 8.5955 45 1 -1.4124 2.2704 9.0515 46 1 -3.2897 1.4675 10.8104 47 1 -4.9951 1.2721 13.6728 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175776087.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:28:11 Heat of formation + Delta-G solvation = -55.190723 kcal Electronic energy + Delta-G solvation = -27756.393259 eV Core-core repulsion = 23554.808886 eV Total energy + Delta-G solvation = -4201.584373 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -45.98378 -40.76744 -40.14169 -37.65979 -36.13660 -35.89004 -35.64759 -35.59281 -33.28706 -32.48204 -31.28952 -29.83655 -28.66653 -26.85888 -25.71960 -24.70839 -24.06418 -22.59263 -21.89655 -21.08146 -20.82148 -19.89997 -19.01108 -18.86379 -17.87664 -17.46411 -17.22504 -17.08810 -16.63518 -16.40177 -15.99889 -15.83397 -15.50262 -15.27803 -15.01698 -14.90267 -14.48355 -14.38487 -14.33278 -14.15364 -13.86932 -13.56320 -13.48676 -13.36249 -13.18124 -12.86289 -12.73403 -12.56535 -12.52616 -12.41041 -12.40752 -12.11533 -11.88560 -11.84367 -11.49925 -11.43363 -11.00712 -10.52433 -10.34522 -10.23996 -10.01090 -9.31379 -8.46162 -5.95006 0.21753 0.79133 1.21443 1.38779 1.42787 1.55452 1.70128 2.05956 2.16252 2.30339 2.94208 3.06734 3.16366 3.21300 3.53714 3.65733 3.80967 4.01762 4.08473 4.15009 4.18997 4.20498 4.26835 4.35106 4.45889 4.50300 4.53135 4.58571 4.60532 4.65827 4.71221 4.75884 4.80474 4.95987 5.01084 5.04809 5.13372 5.20059 5.30143 5.33029 5.41539 5.89636 6.11085 6.32736 6.43972 6.60578 6.99083 7.12981 7.13094 7.56994 8.12022 8.71115 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024220 B = 0.001477 C = 0.001460 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.791768 B =18954.017603 C =19176.184728 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.049 4.049 3 C 0.037 3.963 4 O 0.092 5.908 5 N -0.378 5.378 6 C 0.051 3.949 7 C -0.080 4.080 8 C -0.273 4.273 9 C 0.607 3.393 10 O -0.565 6.565 11 N -0.701 5.701 12 C 0.126 3.874 13 C -0.116 4.116 14 C 0.062 3.938 15 N -0.684 5.684 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.574 5.574 20 C -0.335 4.335 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.270 1.270 26 H -0.271 1.271 27 H -0.273 1.273 28 H 0.089 0.911 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.116 0.884 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.091 0.909 36 H 0.415 0.585 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.345 0.655 44 H 0.068 0.932 45 H 0.103 0.897 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.581 -2.687 -24.072 28.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.087 4.087 3 C -0.027 4.027 4 O 0.032 5.968 5 N -0.086 5.086 6 C -0.111 4.111 7 C -0.137 4.137 8 C -0.281 4.281 9 C 0.392 3.608 10 O -0.444 6.444 11 N -0.352 5.352 12 C 0.002 3.998 13 C -0.154 4.154 14 C -0.067 4.067 15 N -0.317 5.317 16 C -0.068 4.068 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.196 1.196 26 H -0.196 1.196 27 H -0.198 1.198 28 H 0.108 0.892 29 H 0.075 0.925 30 H 0.085 0.915 31 H 0.134 0.866 32 H 0.116 0.884 33 H 0.110 0.890 34 H 0.113 0.887 35 H 0.110 0.890 36 H 0.252 0.748 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.164 0.836 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 16.126 -1.362 -24.881 29.681 hybrid contribution -0.859 -0.922 1.305 1.814 sum 15.267 -2.284 -23.577 28.181 Atomic orbital electron populations 1.21805 0.91628 1.04323 1.02845 1.20482 0.97899 0.84006 1.06354 1.25222 0.96171 0.96898 0.84403 1.84521 1.61506 1.17424 1.33311 1.73630 1.18570 0.99276 1.17142 1.25197 0.99740 0.97267 0.88924 1.20359 1.02932 0.90597 0.99842 1.21888 1.15084 0.96161 0.94953 1.16871 0.82572 0.77317 0.84048 1.90829 1.39955 1.44988 1.68632 1.45878 1.14531 1.62701 1.12100 1.21327 0.97486 1.01139 0.79813 1.21593 0.95372 1.03297 0.95167 1.21910 0.89910 0.99315 0.95544 1.60054 1.05149 1.64820 1.01655 1.21533 0.93491 1.00370 0.91410 1.20920 0.90808 0.83379 0.82467 1.90486 1.56327 1.49820 1.54394 1.41947 1.13762 1.55480 1.09900 1.19676 0.90981 1.39967 0.95813 0.90273 1.26040 1.03494 0.96521 0.95240 1.69670 1.37136 1.43558 1.05722 0.84922 0.77207 0.78642 0.77535 1.19582 1.19616 1.19806 0.89244 0.92456 0.91542 0.86558 0.88356 0.89047 0.88688 0.89042 0.74839 0.90966 0.91281 0.90348 0.90219 0.93798 0.90256 0.83592 0.91435 0.87848 0.76951 0.91308 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.89 71.98 0.71 -0.21 16 2 C -0.05 -0.41 6.38 29.85 0.19 -0.22 16 3 C 0.04 0.55 6.80 25.48 0.17 0.72 16 4 O 0.09 1.63 11.06 77.00 0.85 2.48 16 5 N -0.38 -7.62 12.01 -44.77 -0.54 -8.16 16 6 C 0.05 0.92 7.59 45.16 0.34 1.26 16 7 C -0.08 -1.01 10.49 71.24 0.75 -0.27 16 8 C -0.27 -4.83 6.24 -18.75 -0.12 -4.95 16 9 C 0.61 11.60 7.60 86.65 0.66 12.26 16 10 O -0.57 -15.28 17.11 -4.06 -0.07 -15.35 16 11 N -0.70 -9.57 5.55 -466.39 -2.59 -12.16 16 12 C 0.13 1.78 5.67 86.38 0.49 2.27 16 13 C -0.12 -1.67 5.59 30.60 0.17 -1.50 16 14 C 0.06 1.19 5.68 86.30 0.49 1.68 16 15 N -0.68 -19.52 6.13 -517.92 -3.17 -22.70 16 16 C 0.06 2.09 6.17 85.56 0.53 2.62 16 17 C 0.44 20.31 7.82 87.66 0.69 20.99 16 18 O -0.62 -33.89 15.78 -3.06 -0.05 -33.94 16 19 N -0.57 -29.03 5.29 -306.98 -1.62 -30.65 16 20 C -0.33 -18.85 9.68 84.04 0.81 -18.03 16 21 H 0.08 4.75 7.16 -2.91 -0.02 4.73 16 22 C -0.01 -0.70 5.50 84.93 0.47 -0.23 16 23 N -0.92 -49.18 13.05 21.66 0.28 -48.89 16 24 Si 0.99 42.47 29.55 68.60 2.03 44.49 16 25 H -0.27 -11.18 7.11 99.48 0.71 -10.47 16 26 H -0.27 -11.00 7.11 99.48 0.71 -10.30 16 27 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 28 H 0.09 0.34 8.14 -2.39 -0.02 0.32 16 29 H 0.06 0.41 8.14 -2.39 -0.02 0.39 16 30 H 0.07 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.12 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.10 0.90 8.11 -2.39 -0.02 0.88 16 33 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 35 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.41 3.99 8.46 -92.70 -0.78 3.21 16 37 H 0.07 1.06 8.14 -2.39 -0.02 1.04 16 38 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.04 0.75 8.14 -2.38 -0.02 0.73 16 42 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 43 H 0.35 10.23 8.43 -89.70 -0.76 9.47 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.10 3.04 8.14 -2.39 -0.02 3.02 16 46 H 0.40 19.01 7.90 -92.71 -0.73 18.28 16 47 H 0.28 13.88 8.31 -92.70 -0.77 13.11 16 Total: -1.00 -74.82 408.46 0.22 -74.60 By element: Atomic # 1 Polarization: 35.14 SS G_CDS: -1.25 Total: 33.88 kcal Atomic # 6 Polarization: 10.04 SS G_CDS: 6.35 Total: 16.39 kcal Atomic # 7 Polarization: -114.92 SS G_CDS: -7.64 Total: -122.56 kcal Atomic # 8 Polarization: -47.55 SS G_CDS: 0.73 Total: -46.81 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.49 kcal Total: -74.82 0.22 -74.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175776087.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.414 kcal (2) G-P(sol) polarization free energy of solvation -74.825 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.411 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.604 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds