Wall clock time and date at job start Tue Mar 31 2020 22:31:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.50700 * 109.46885 * 2 1 4 4 N 1.30020 * 127.33861 * 270.14877 * 3 2 1 5 5 O 1.20655 * 112.30031 * 180.27414 * 4 3 2 6 6 C 1.33494 * 113.16169 * 359.73859 * 5 4 3 7 7 C 1.50697 * 126.83479 * 180.02562 * 6 5 4 8 8 C 1.37366 * 106.33747 * 359.97438 * 6 5 4 9 9 C 1.47394 * 128.56213 * 179.97438 * 8 6 5 10 10 O 1.21610 * 120.00204 * 90.03170 * 9 8 6 11 11 N 1.34784 * 120.00019 * 270.02666 * 9 8 6 12 12 C 1.46493 * 119.99864 * 179.72895 * 11 9 8 13 13 C 1.53001 * 109.47084 * 180.02562 * 12 11 9 14 14 C 1.53003 * 109.47182 * 179.97438 * 13 12 11 15 15 N 1.46905 * 109.46696 * 179.97438 * 14 13 12 16 16 C 1.46907 * 110.99618 * 180.02562 * 15 14 13 17 17 C 1.50693 * 109.46927 * 180.02562 * 16 15 14 18 18 O 1.21288 * 120.00214 * 359.97438 * 17 16 15 19 19 N 1.34779 * 120.00122 * 180.02562 * 17 16 15 20 20 C 1.37088 * 120.00485 * 180.02562 * 19 17 16 21 21 H 1.08006 * 120.00020 * 359.97438 * 20 19 17 22 22 C 1.38945 * 120.00546 * 179.97438 * 20 19 17 23 23 N 1.31414 * 119.99611 * 0.02562 * 22 20 19 24 24 Si 1.86800 * 120.00299 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47133 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.46676 * 120.00453 * 24 22 20 27 27 H 1.48501 * 109.47421 * 239.99882 * 24 22 20 28 28 H 1.08996 * 109.47126 * 59.99809 * 1 2 3 29 29 H 1.09002 * 109.46930 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46755 * 299.99400 * 1 2 3 31 31 H 1.09003 * 109.46755 * 240.00600 * 2 1 3 32 32 H 1.08991 * 109.47519 * 120.00415 * 2 1 3 33 33 H 1.08998 * 109.46972 * 269.99490 * 7 6 5 34 34 H 1.09003 * 109.47240 * 29.99245 * 7 6 5 35 35 H 1.09001 * 109.47636 * 149.99174 * 7 6 5 36 36 H 0.97000 * 119.99339 * 0.02562 * 11 9 8 37 37 H 1.09007 * 109.47196 * 299.99538 * 12 11 9 38 38 H 1.09006 * 109.47678 * 59.99732 * 12 11 9 39 39 H 1.09007 * 109.46593 * 299.99743 * 13 12 11 40 40 H 1.08993 * 109.47372 * 59.99485 * 13 12 11 41 41 H 1.08993 * 109.47057 * 299.99535 * 14 13 12 42 42 H 1.09001 * 109.47095 * 59.99863 * 14 13 12 43 43 H 1.00894 * 111.00142 * 56.04826 * 15 14 13 44 44 H 1.08999 * 109.47052 * 300.00136 * 16 15 14 45 45 H 1.08999 * 109.46905 * 59.99941 * 16 15 14 46 46 H 0.97005 * 119.99393 * 359.97438 * 19 17 16 47 47 H 0.97010 * 119.99825 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2926 2.1652 -1.0337 5 8 2.6868 3.2618 -0.7207 6 6 2.7519 3.4389 0.6008 7 6 3.1988 4.6827 1.3248 8 6 2.3293 2.2621 1.1697 9 6 2.2096 1.9235 2.5992 10 8 1.1691 2.1399 3.1903 11 7 3.2534 1.3740 3.2513 12 6 3.1365 1.0430 4.6735 13 6 4.4524 0.4374 5.1661 14 6 4.3304 0.0923 6.6517 15 7 5.5937 -0.4897 7.1244 16 6 5.5134 -0.8349 8.5501 17 6 6.8246 -1.4271 8.9982 18 8 7.7362 -1.5500 8.2077 19 7 6.9841 -1.8211 10.2772 20 6 8.1771 -2.3594 10.6850 21 1 8.9892 -2.4681 9.9813 22 6 8.3416 -2.7651 12.0037 23 7 7.3534 -2.6333 12.8599 24 14 9.9671 -3.4992 12.5592 25 1 10.9099 -3.5388 11.4126 26 1 10.5423 -2.6640 13.6440 27 1 9.7412 -4.8779 13.0628 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8901 31 1 1.8933 -0.5138 -0.8901 32 1 1.8934 -0.5138 0.8898 33 1 4.2739 4.6356 1.4982 34 1 2.9665 5.5588 0.7193 35 1 2.6794 4.7535 2.2804 36 1 4.0834 1.2017 2.7798 37 1 2.9188 1.9481 5.2406 38 1 2.3298 0.3234 4.8141 39 1 4.6705 -0.4677 4.5991 40 1 5.2587 1.1572 5.0257 41 1 4.1126 0.9975 7.2183 42 1 3.5240 -0.6274 6.7925 43 1 6.3677 0.1324 6.9458 44 1 5.3038 0.0638 9.1302 45 1 4.7150 -1.5609 8.7037 46 1 6.2548 -1.7231 10.9093 47 1 7.4684 -2.9163 13.7806 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001175897796.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 22:31:34 Heat of formation + Delta-G solvation = -55.592958 kcal Electronic energy + Delta-G solvation = -27635.563294 eV Core-core repulsion = 23433.961479 eV Total energy + Delta-G solvation = -4201.601815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -45.97374 -40.75179 -40.14424 -37.65950 -36.38072 -36.13347 -35.65409 -34.68084 -33.28593 -32.56402 -32.18918 -29.22027 -28.48928 -26.80762 -25.89375 -25.02809 -23.96685 -22.59109 -21.75531 -21.07446 -20.82519 -19.90281 -19.05802 -18.82404 -17.87865 -17.45744 -17.22077 -17.08821 -16.61810 -16.36127 -15.98735 -15.73961 -15.58411 -15.26278 -15.08834 -15.03554 -14.60195 -14.41121 -14.18670 -14.10885 -13.75652 -13.56604 -13.53296 -13.36009 -13.17889 -12.86483 -12.73447 -12.63604 -12.54138 -12.42096 -12.39503 -12.10670 -11.90709 -11.83983 -11.50851 -11.42611 -11.04284 -10.45975 -10.34686 -10.23384 -10.01125 -9.31399 -8.46507 -5.95253 0.24439 0.79657 1.22658 1.37302 1.42819 1.56895 1.73726 2.05708 2.18686 2.30308 2.93109 3.02753 3.19520 3.21041 3.53625 3.69098 3.85039 4.02016 4.07418 4.14707 4.19009 4.20850 4.27860 4.34194 4.37240 4.50198 4.58211 4.58699 4.60596 4.64501 4.71298 4.79668 4.81914 4.87622 4.97642 5.06417 5.13778 5.19062 5.20298 5.33572 5.41670 5.89579 6.11042 6.34092 6.44019 6.60405 7.00441 7.13058 7.14706 7.56829 8.11878 8.71029 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.001440 C = 0.001426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.595631 B =19440.781300 C =19636.969896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.050 4.050 3 C 0.055 3.945 4 N -0.376 5.376 5 O 0.091 5.909 6 C 0.035 3.965 7 C -0.082 4.082 8 C -0.277 4.277 9 C 0.607 3.393 10 O -0.564 6.564 11 N -0.702 5.702 12 C 0.126 3.874 13 C -0.116 4.116 14 C 0.062 3.938 15 N -0.685 5.685 16 C 0.064 3.936 17 C 0.437 3.563 18 O -0.624 6.624 19 N -0.574 5.574 20 C -0.334 4.334 21 H 0.079 0.921 22 C -0.013 4.013 23 N -0.920 5.920 24 Si 0.993 3.007 25 H -0.273 1.273 26 H -0.271 1.271 27 H -0.272 1.272 28 H 0.053 0.947 29 H 0.087 0.913 30 H 0.045 0.955 31 H 0.099 0.901 32 H 0.095 0.905 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.092 0.908 36 H 0.415 0.585 37 H 0.072 0.928 38 H 0.068 0.932 39 H 0.078 0.922 40 H 0.079 0.921 41 H 0.044 0.956 42 H 0.079 0.921 43 H 0.346 0.654 44 H 0.068 0.932 45 H 0.104 0.896 46 H 0.397 0.603 47 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.773 12.956 -22.774 29.149 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.088 4.088 3 C -0.108 4.108 4 N -0.084 5.084 5 O 0.031 5.969 6 C -0.029 4.029 7 C -0.139 4.139 8 C -0.285 4.285 9 C 0.392 3.608 10 O -0.443 6.443 11 N -0.353 5.353 12 C 0.002 3.998 13 C -0.154 4.154 14 C -0.067 4.067 15 N -0.317 5.317 16 C -0.068 4.068 17 C 0.224 3.776 18 O -0.510 6.510 19 N -0.211 5.211 20 C -0.464 4.464 21 H 0.097 0.903 22 C -0.213 4.213 23 N -0.561 5.561 24 Si 0.817 3.183 25 H -0.198 1.198 26 H -0.196 1.196 27 H -0.197 1.197 28 H 0.072 0.928 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.117 0.883 32 H 0.113 0.887 33 H 0.137 0.863 34 H 0.130 0.870 35 H 0.111 0.889 36 H 0.252 0.748 37 H 0.090 0.910 38 H 0.086 0.914 39 H 0.096 0.904 40 H 0.098 0.902 41 H 0.062 0.938 42 H 0.097 0.903 43 H 0.164 0.836 44 H 0.086 0.914 45 H 0.122 0.878 46 H 0.230 0.770 47 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -13.129 12.180 -24.178 30.088 hybrid contribution 0.654 0.252 1.733 1.870 sum -12.475 12.432 -22.445 28.530 Atomic orbital electron populations 1.21699 0.93286 1.03548 1.01634 1.20132 0.96985 0.86563 1.05091 1.25128 0.99859 0.99423 0.86340 1.73613 1.17623 0.93136 1.23991 1.84523 1.62510 1.26612 1.23229 1.25265 0.96329 0.98064 0.83242 1.20725 1.04152 0.89883 0.99107 1.21880 1.15207 0.96573 0.94814 1.16880 0.83220 0.76728 0.84015 1.90826 1.30029 1.54723 1.68755 1.45877 1.15901 1.61889 1.11637 1.21321 0.98204 1.00547 0.79683 1.21594 0.96483 1.01920 0.95432 1.21910 0.91484 0.98343 0.94941 1.60043 1.06224 1.49994 1.15449 1.21533 0.94591 1.00741 0.89930 1.20920 0.90969 0.83431 0.82239 1.90486 1.45157 1.61358 1.54018 1.41950 1.14650 1.55128 1.09382 1.19713 0.92628 1.38728 0.95304 0.90278 1.26043 1.02425 0.97597 0.95237 1.69681 1.33184 1.47982 1.05272 0.84863 0.77300 0.78064 0.78059 1.19772 1.19590 1.19685 0.92763 0.89454 0.93619 0.88283 0.88696 0.86273 0.87031 0.88926 0.74779 0.90965 0.91360 0.90364 0.90208 0.93789 0.90268 0.83582 0.91438 0.87831 0.76952 0.91313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 9.89 71.98 0.71 -1.30 16 2 C -0.05 -0.70 6.55 29.85 0.20 -0.50 16 3 C 0.05 1.00 6.84 45.16 0.31 1.31 16 4 N -0.38 -7.56 12.01 -44.77 -0.54 -8.10 16 5 O 0.09 1.57 11.06 76.98 0.85 2.42 16 6 C 0.03 0.49 7.55 25.48 0.19 0.68 16 7 C -0.08 -0.49 10.33 71.23 0.74 0.25 16 8 C -0.28 -4.85 6.24 -18.74 -0.12 -4.97 16 9 C 0.61 11.54 7.60 86.65 0.66 12.20 16 10 O -0.56 -15.18 17.11 -4.06 -0.07 -15.25 16 11 N -0.70 -9.56 5.55 -466.39 -2.59 -12.15 16 12 C 0.13 1.79 5.67 86.38 0.49 2.28 16 13 C -0.12 -1.68 5.59 30.60 0.17 -1.51 16 14 C 0.06 1.19 5.69 86.30 0.49 1.68 16 15 N -0.68 -19.58 6.13 -517.92 -3.17 -22.75 16 16 C 0.06 2.09 6.17 85.55 0.53 2.62 16 17 C 0.44 20.33 7.82 87.65 0.69 21.02 16 18 O -0.62 -33.93 15.78 -3.05 -0.05 -33.98 16 19 N -0.57 -29.06 5.29 -307.00 -1.62 -30.68 16 20 C -0.33 -18.83 9.68 84.04 0.81 -18.02 16 21 H 0.08 4.76 7.16 -2.91 -0.02 4.74 16 22 C -0.01 -0.71 5.50 84.92 0.47 -0.24 16 23 N -0.92 -49.21 13.05 21.66 0.28 -48.93 16 24 Si 0.99 42.50 29.55 68.60 2.03 44.53 16 25 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 26 H -0.27 -11.06 7.11 99.48 0.71 -10.35 16 27 H -0.27 -11.15 7.11 99.48 0.71 -10.44 16 28 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.09 0.88 8.14 -2.39 -0.02 0.87 16 30 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.10 1.16 8.14 -2.39 -0.02 1.14 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.12 0.24 8.14 -2.39 -0.02 0.22 16 34 H 0.11 0.28 8.14 -2.39 -0.02 0.26 16 35 H 0.09 0.67 8.11 -2.39 -0.02 0.65 16 36 H 0.42 3.93 8.46 -92.71 -0.78 3.14 16 37 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 38 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 39 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 40 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 43 H 0.35 10.25 8.43 -89.70 -0.76 9.49 16 44 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 45 H 0.10 3.05 8.14 -2.39 -0.02 3.03 16 46 H 0.40 19.02 7.90 -92.70 -0.73 18.29 16 47 H 0.28 13.85 8.31 -92.70 -0.77 13.08 16 Total: -1.00 -75.45 408.46 0.20 -75.25 By element: Atomic # 1 Polarization: 35.39 SS G_CDS: -1.25 Total: 34.13 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 6.33 Total: 15.50 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -7.64 Total: -122.61 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: 0.73 Total: -46.80 kcal Atomic # 14 Polarization: 42.50 SS G_CDS: 2.03 Total: 44.53 kcal Total: -75.45 0.20 -75.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001175897796.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.657 kcal (2) G-P(sol) polarization free energy of solvation -75.449 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.250 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds