Wall clock time and date at job start Tue Mar 31 2020 20:36:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 N 1.34163 * 125.95486 * 2 1 4 4 C 1.30430 * 109.41006 * 180.02562 * 3 2 1 5 5 N 1.36026 * 108.69939 * 359.73043 * 4 3 2 6 6 C 1.46497 * 126.46178 * 180.28229 * 5 4 3 7 7 C 1.35398 * 125.95317 * 180.02562 * 2 1 3 8 8 N 1.39723 * 126.63948 * 359.97438 * 7 2 1 9 9 C 1.34771 * 120.00400 * 152.07350 * 8 7 2 10 10 O 1.21303 * 120.00183 * 354.15176 * 9 8 7 11 11 C 1.50701 * 120.00041 * 174.15262 * 9 8 7 12 12 H 1.09004 * 109.46938 * 59.99804 * 11 9 8 13 13 C 1.50703 * 109.46996 * 300.00032 * 11 9 8 14 14 H 1.08000 * 119.99793 * 120.00103 * 13 11 9 15 15 C 1.37884 * 119.99763 * 299.99424 * 13 11 9 16 16 N 1.31513 * 119.99985 * 0.02562 * 15 13 11 17 17 Si 1.86796 * 119.99708 * 180.02562 * 15 13 11 18 18 H 1.48498 * 109.47469 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.47126 * 120.00489 * 17 15 13 20 20 H 1.48502 * 109.47274 * 240.00451 * 17 15 13 21 21 N 1.46500 * 109.47361 * 179.97438 * 11 9 8 22 22 C 1.34767 * 120.00228 * 204.99922 * 21 11 9 23 23 O 1.21511 * 120.00123 * 0.02562 * 22 21 11 24 24 O 1.34638 * 120.00375 * 179.97438 * 22 21 11 25 25 C 1.45195 * 117.00567 * 180.02562 * 24 22 21 26 26 C 1.52998 * 109.47042 * 60.00152 * 25 24 22 27 27 C 1.53001 * 109.47428 * 180.02562 * 25 24 22 28 28 C 1.53004 * 109.46878 * 300.00410 * 25 24 22 29 29 H 1.09001 * 109.47555 * 269.97546 * 1 2 3 30 30 H 1.09005 * 109.47545 * 29.97796 * 1 2 3 31 31 H 1.09009 * 109.47160 * 149.97404 * 1 2 3 32 32 H 1.08003 * 125.65159 * 179.97438 * 4 3 2 33 33 H 1.09007 * 109.46447 * 270.92457 * 6 5 4 34 34 H 1.08996 * 109.47971 * 30.92554 * 6 5 4 35 35 H 1.09004 * 109.47020 * 150.93333 * 6 5 4 36 36 H 0.97000 * 119.99483 * 332.06233 * 8 7 2 37 37 H 0.96995 * 119.99861 * 179.97438 * 16 15 13 38 38 H 0.97006 * 119.99450 * 24.99602 * 21 11 9 39 39 H 1.08997 * 109.47509 * 60.00389 * 26 25 24 40 40 H 1.09005 * 109.47353 * 180.02562 * 26 25 24 41 41 H 1.09002 * 109.47301 * 300.00009 * 26 25 24 42 42 H 1.08995 * 109.47080 * 59.99676 * 27 25 24 43 43 H 1.08996 * 109.47134 * 180.02562 * 27 25 24 44 44 H 1.09003 * 109.46854 * 299.99919 * 27 25 24 45 45 H 1.09002 * 109.47358 * 60.00056 * 28 25 24 46 46 H 1.09001 * 109.46762 * 180.02562 * 28 25 24 47 47 H 1.08998 * 109.46842 * 299.99448 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2947 1.0860 0.0000 4 6 3.5450 0.7146 -0.0006 5 7 3.5961 -0.6447 0.0051 6 6 4.8062 -1.4703 0.0124 7 6 2.3019 -1.0960 -0.0005 8 7 1.8839 -2.4293 -0.0006 9 6 2.6660 -3.3807 -0.5476 10 8 3.6814 -3.0685 -1.1333 11 6 2.2792 -4.8327 -0.4318 12 1 1.3077 -4.9884 -0.9011 13 6 2.2016 -5.2173 1.0232 14 1 1.2727 -5.5813 1.4367 15 6 3.3167 -5.1046 1.8264 16 7 4.4477 -4.6610 1.3229 17 14 3.2207 -5.5821 3.6298 18 1 1.8466 -6.0479 3.9461 19 1 4.1887 -6.6741 3.9049 20 1 3.5506 -4.4043 4.4720 21 7 3.2838 -5.6608 -1.1035 22 6 2.9476 -6.8772 -1.5763 23 8 1.8111 -7.2870 -1.4459 24 8 3.8707 -7.6382 -2.1941 25 6 3.4379 -8.9367 -2.6784 26 6 2.3102 -8.7515 -3.6957 27 6 4.6152 -9.6506 -3.3456 28 6 2.9321 -9.7765 -1.5037 29 1 -0.3634 -0.0004 1.0276 30 1 -0.3634 0.8902 -0.5135 31 1 -0.3634 -0.8898 -0.5143 32 1 4.3983 1.3766 -0.0011 33 1 5.1189 -1.6655 -1.0135 34 1 5.6016 -0.9449 0.5409 35 1 4.5984 -2.4151 0.5148 36 1 1.0308 -2.6700 0.3933 37 1 5.2320 -4.5814 1.8880 38 1 4.1910 -5.3335 -1.2079 39 1 2.6705 -8.1533 -4.5326 40 1 1.9849 -9.7264 -4.0591 41 1 1.4715 -8.2431 -3.2201 42 1 5.4182 -9.7825 -2.6205 43 1 4.2900 -10.6252 -3.7096 44 1 4.9758 -9.0525 -4.1824 45 1 2.0934 -9.2680 -1.0280 46 1 2.6075 -10.7514 -1.8672 47 1 3.7355 -9.9084 -0.7789 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180778436.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:50 Heat of formation + Delta-G solvation = -65.982217 kcal Electronic energy + Delta-G solvation = -31248.476553 eV Core-core repulsion = 27046.424226 eV Total energy + Delta-G solvation = -4202.052327 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -43.08712 -41.53868 -40.43547 -38.05944 -35.91780 -35.73276 -34.97859 -34.93549 -33.74957 -31.50297 -29.80635 -28.37954 -28.27782 -28.22270 -26.56974 -25.74500 -23.60415 -22.44469 -21.30741 -20.97092 -20.54785 -19.27609 -18.79237 -18.46753 -17.51270 -17.35640 -17.02532 -16.70203 -16.59730 -16.45117 -15.80221 -15.56547 -15.31699 -15.20952 -14.94287 -14.46029 -14.37001 -14.16270 -13.98903 -13.63023 -13.26791 -13.24836 -13.08541 -13.00827 -12.94516 -12.92687 -12.77333 -12.76078 -12.70103 -12.40032 -12.21769 -12.13954 -11.85125 -11.53744 -11.23617 -11.21650 -10.91703 -10.78610 -10.39132 -10.16802 -9.63935 -8.59748 -8.29552 -6.47313 0.97758 1.30859 1.41263 1.44379 1.48974 1.78129 1.97487 2.13327 2.26538 2.35576 2.52207 3.00508 3.68772 3.78764 3.87109 3.89737 4.04524 4.05959 4.12370 4.37556 4.47542 4.56319 4.65471 4.65894 4.67689 4.81466 4.84871 4.89231 4.93722 4.94349 4.94547 4.99212 5.05179 5.14475 5.34371 5.37906 5.41931 5.42372 5.60991 5.64714 5.74457 5.92428 5.94867 6.39723 6.50105 6.63905 6.91231 7.14878 7.25991 7.40290 7.75912 8.71240 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.012844 B = 0.003865 C = 0.003442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2179.547228 B = 7242.312619 C = 8132.684012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C -0.050 4.050 3 N -0.501 5.501 4 C 0.170 3.830 5 N -0.458 5.458 6 C 0.086 3.914 7 C 0.206 3.794 8 N -0.630 5.630 9 C 0.537 3.463 10 O -0.551 6.551 11 C 0.271 3.729 12 H 0.070 0.930 13 C -0.543 4.543 14 H 0.068 0.932 15 C 0.049 3.951 16 N -0.873 5.873 17 Si 0.949 3.051 18 H -0.268 1.268 19 H -0.288 1.288 20 H -0.281 1.281 21 N -0.666 5.666 22 C 0.645 3.355 23 O -0.602 6.602 24 O -0.382 6.382 25 C 0.119 3.881 26 C -0.175 4.175 27 C -0.132 4.132 28 C -0.177 4.177 29 H 0.075 0.925 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.241 0.759 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.096 0.904 36 H 0.429 0.571 37 H 0.268 0.732 38 H 0.401 0.599 39 H 0.059 0.941 40 H 0.095 0.905 41 H 0.059 0.941 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.068 0.932 45 H 0.058 0.942 46 H 0.095 0.905 47 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.312 -1.263 -4.747 4.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.182 4.182 3 N -0.220 5.220 4 C -0.112 4.112 5 N -0.145 5.145 6 C -0.056 4.056 7 C -0.004 4.004 8 N -0.279 5.279 9 C 0.327 3.673 10 O -0.428 6.428 11 C 0.166 3.834 12 H 0.088 0.912 13 C -0.582 4.582 14 H 0.087 0.913 15 C -0.157 4.157 16 N -0.508 5.508 17 Si 0.776 3.224 18 H -0.192 1.192 19 H -0.214 1.214 20 H -0.207 1.207 21 N -0.323 5.323 22 C 0.397 3.603 23 O -0.494 6.494 24 O -0.297 6.297 25 C 0.083 3.917 26 C -0.232 4.232 27 C -0.189 4.189 28 C -0.234 4.234 29 H 0.094 0.906 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.257 0.743 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.115 0.885 36 H 0.268 0.732 37 H 0.077 0.923 38 H 0.236 0.764 39 H 0.078 0.922 40 H 0.113 0.887 41 H 0.078 0.922 42 H 0.081 0.919 43 H 0.126 0.874 44 H 0.087 0.913 45 H 0.077 0.923 46 H 0.114 0.886 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -0.081 -0.614 -5.092 5.129 hybrid contribution 0.695 -1.145 1.359 1.908 sum 0.614 -1.759 -3.732 4.172 Atomic orbital electron populations 1.20011 0.85613 1.03099 1.02777 1.20732 0.97495 0.86358 1.13568 1.70052 1.01222 1.29987 1.20788 1.25512 0.97733 0.80889 1.07042 1.45526 1.06084 1.08391 1.54487 1.22399 0.83533 0.95991 1.03655 1.18212 0.85354 0.86204 1.10596 1.42465 1.23797 1.02157 1.59510 1.21234 0.82125 0.88408 0.75574 1.90588 1.25995 1.82962 1.43261 1.18165 0.88155 0.83725 0.93324 0.91209 1.21354 0.97983 1.46419 0.92444 0.91345 1.25549 0.95022 0.93348 1.01767 1.69900 1.00915 1.43082 1.36915 0.85627 0.78301 0.77678 0.80801 1.19244 1.21391 1.20684 1.44959 1.15515 1.14044 1.57783 1.18103 0.82827 0.81894 0.77428 1.90768 1.21069 1.73249 1.64364 1.86305 1.41759 1.31165 1.70518 1.22389 0.96695 0.78470 0.94137 1.22435 0.98616 1.03965 0.98218 1.21857 0.95835 1.00684 1.00540 1.22439 1.01971 1.00963 0.98024 0.90629 0.90647 0.90847 0.74302 0.90871 0.89781 0.88524 0.73193 0.92297 0.76373 0.92243 0.88666 0.92210 0.91897 0.87445 0.91343 0.92320 0.88613 0.93076 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.50 10.34 71.23 0.74 -0.76 16 2 C -0.05 -1.73 7.11 41.54 0.30 -1.43 16 3 N -0.50 -17.37 11.24 -187.10 -2.10 -19.48 16 4 C 0.17 5.32 12.61 179.97 2.27 7.59 16 5 N -0.46 -16.55 3.13 -548.23 -1.72 -18.27 16 6 C 0.09 3.08 8.94 127.77 1.14 4.22 16 7 C 0.21 7.76 7.31 130.50 0.95 8.72 16 8 N -0.63 -23.86 5.24 -307.55 -1.61 -25.47 16 9 C 0.54 23.05 5.12 87.66 0.45 23.50 16 10 O -0.55 -25.02 10.75 -3.10 -0.03 -25.05 16 11 C 0.27 12.25 2.56 43.50 0.11 12.36 16 12 H 0.07 3.15 7.58 -2.39 -0.02 3.13 16 13 C -0.54 -25.89 8.73 25.60 0.22 -25.66 16 14 H 0.07 3.31 7.81 -2.91 -0.02 3.28 16 15 C 0.05 2.33 5.23 84.66 0.44 2.77 16 16 N -0.87 -41.85 10.10 21.45 0.22 -41.64 16 17 Si 0.95 39.72 29.54 68.60 2.03 41.75 16 18 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 19 H -0.29 -12.29 7.11 99.48 0.71 -11.58 16 20 H -0.28 -11.65 7.11 99.48 0.71 -10.94 16 21 N -0.67 -30.61 4.36 -577.36 -2.52 -33.13 16 22 C 0.64 28.89 8.01 129.79 1.04 29.93 16 23 O -0.60 -28.26 11.54 19.81 0.23 -28.03 16 24 O -0.38 -15.11 9.94 -55.48 -0.55 -15.66 16 25 C 0.12 3.64 1.13 -10.79 -0.01 3.62 16 26 C -0.18 -4.93 8.37 71.98 0.60 -4.33 16 27 C -0.13 -2.89 8.85 71.98 0.64 -2.26 16 28 C -0.18 -5.38 8.37 71.98 0.60 -4.78 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.07 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 32 H 0.24 5.16 8.06 -2.91 -0.02 5.14 16 33 H 0.07 2.77 6.89 -2.38 -0.02 2.76 16 34 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 35 H 0.10 4.12 4.73 -2.39 -0.01 4.11 16 36 H 0.43 14.36 8.77 -92.71 -0.81 13.54 16 37 H 0.27 12.52 8.31 -92.71 -0.77 11.75 16 38 H 0.40 19.07 7.59 -92.70 -0.70 18.37 16 39 H 0.06 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 41 H 0.06 2.08 5.88 -2.39 -0.01 2.06 16 42 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 43 H 0.11 1.64 8.14 -2.39 -0.02 1.63 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.06 2.21 5.88 -2.39 -0.01 2.19 16 46 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 47 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -61.61 380.93 2.93 -58.68 By element: Atomic # 1 Polarization: 53.30 SS G_CDS: -0.50 Total: 52.80 kcal Atomic # 6 Polarization: 43.99 SS G_CDS: 9.50 Total: 53.49 kcal Atomic # 7 Polarization: -130.24 SS G_CDS: -7.73 Total: -137.97 kcal Atomic # 8 Polarization: -68.39 SS G_CDS: -0.36 Total: -68.74 kcal Atomic # 14 Polarization: 39.72 SS G_CDS: 2.03 Total: 41.75 kcal Total: -61.61 2.93 -58.68 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180778436.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.305 kcal (2) G-P(sol) polarization free energy of solvation -61.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds