Wall clock time and date at job start Tue Mar 31 2020 20:36:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35227 * 126.64919 * 2 1 4 4 N 1.40465 * 126.05210 * 359.92934 * 3 2 1 5 5 C 1.34774 * 120.00069 * 179.97438 * 4 3 2 6 6 O 1.21306 * 120.00090 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00164 * 179.97438 * 5 4 3 8 8 H 1.09001 * 109.46953 * 59.99903 * 7 5 4 9 9 C 1.50698 * 109.47294 * 300.00461 * 7 5 4 10 10 H 1.07993 * 120.00472 * 119.99569 * 9 7 5 11 11 C 1.37882 * 119.99554 * 299.99464 * 9 7 5 12 12 N 1.31510 * 120.00063 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99716 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47233 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47163 * 120.00210 * 13 11 9 16 16 H 1.48507 * 109.47309 * 240.00085 * 13 11 9 17 17 N 1.46500 * 109.47187 * 179.97438 * 7 5 4 18 18 C 1.34768 * 120.00056 * 205.00100 * 17 7 5 19 19 O 1.21513 * 120.00374 * 0.02562 * 18 17 7 20 20 O 1.34641 * 119.99891 * 180.02562 * 18 17 7 21 21 C 1.45203 * 116.99751 * 180.02562 * 20 18 17 22 22 C 1.52996 * 109.47248 * 60.00019 * 21 20 18 23 23 C 1.53001 * 109.47210 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.47006 * 299.99705 * 21 20 18 25 25 N 1.34376 * 107.89360 * 180.18843 * 3 2 1 26 26 C 1.30542 * 109.31539 * 359.62188 * 25 3 2 27 27 N 1.34973 * 108.85269 * 0.37748 * 26 25 3 28 28 C 1.46498 * 126.38150 * 179.76432 * 27 26 25 29 29 H 1.08997 * 109.46591 * 90.02563 * 1 2 3 30 30 H 1.08997 * 109.46756 * 210.02351 * 1 2 3 31 31 H 1.09001 * 109.47207 * 330.02832 * 1 2 3 32 32 H 0.97005 * 120.00136 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99949 * 179.97438 * 12 11 9 34 34 H 0.97001 * 119.99547 * 25.00272 * 17 7 5 35 35 H 1.08999 * 109.47388 * 59.99904 * 22 21 20 36 36 H 1.09002 * 109.47189 * 180.02562 * 22 21 20 37 37 H 1.08998 * 109.47287 * 299.99461 * 22 21 20 38 38 H 1.09011 * 109.46735 * 59.99769 * 23 21 20 39 39 H 1.08991 * 109.47535 * 179.97438 * 23 21 20 40 40 H 1.09004 * 109.46945 * 300.00479 * 23 21 20 41 41 H 1.09001 * 109.46869 * 60.00364 * 24 21 20 42 42 H 1.09002 * 109.47137 * 179.97438 * 24 21 20 43 43 H 1.08998 * 109.47551 * 299.99883 * 24 21 20 44 44 H 1.07998 * 125.57528 * 180.14968 * 26 25 3 45 45 H 1.09006 * 109.47576 * 270.00324 * 28 27 26 46 46 H 1.09000 * 109.47353 * 30.00334 * 28 27 26 47 47 H 1.09002 * 109.47724 * 150.00533 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3142 1.0849 0.0000 4 7 1.8966 2.4260 -0.0014 5 6 2.8106 3.4165 -0.0007 6 8 3.9939 3.1498 0.0016 7 6 2.3625 4.8554 -0.0028 8 1 1.7623 5.0503 0.8860 9 6 1.5369 5.1227 -1.2349 10 1 0.5138 5.4544 -1.1379 11 6 2.0879 4.9437 -2.4860 12 7 3.3337 4.5392 -2.6042 13 14 1.0648 5.2756 -4.0133 14 1 -0.2949 5.7178 -3.6118 15 1 1.7125 6.3400 -4.8212 16 1 0.9636 4.0336 -4.8210 17 7 3.5360 5.7324 -0.0009 18 6 3.4415 6.9834 0.4912 19 8 2.3831 7.3840 0.9338 20 8 4.5200 7.7895 0.4924 21 6 4.3451 9.1236 1.0383 22 6 3.9055 9.0228 2.5003 23 6 5.6687 9.8865 0.9547 24 6 3.2767 9.8675 0.2346 25 7 3.5866 0.6529 -0.0042 26 6 3.5994 -0.6525 0.0013 27 7 2.3264 -1.1011 0.0009 28 6 1.8989 -2.5023 0.0012 29 1 -0.3632 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 0.9503 2.6394 -0.0029 33 1 3.7212 4.4129 -3.4844 34 1 4.3810 5.4125 -0.3539 35 1 4.6666 8.4928 3.0729 36 1 3.7738 10.0243 2.9100 37 1 2.9624 8.4796 2.5596 38 1 5.9814 9.9583 -0.0871 39 1 5.5374 10.8880 1.3640 40 1 6.4302 9.3566 1.5269 41 1 2.3336 9.3242 0.2938 42 1 3.1451 10.8689 0.6447 43 1 3.5898 9.9394 -0.8070 44 1 4.4839 -1.2721 0.0021 45 1 1.7934 -2.8503 -1.0264 46 1 2.6438 -3.1094 0.5156 47 1 0.9413 -2.5900 0.5145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001180779278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:56 Heat of formation + Delta-G solvation = -47.246740 kcal Electronic energy + Delta-G solvation = -30552.995074 eV Core-core repulsion = 26351.755179 eV Total energy + Delta-G solvation = -4201.239896 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.71717 -39.77284 -38.40324 -36.31329 -34.37937 -33.72457 -33.38279 -33.10800 -31.78067 -30.91530 -27.91126 -27.04720 -26.94137 -26.69937 -25.70155 -23.80597 -22.00675 -20.89110 -19.80183 -19.16699 -18.91878 -17.45563 -16.98056 -16.69987 -15.86103 -15.69346 -15.43948 -15.19799 -14.84622 -14.72465 -14.02487 -13.92016 -13.72965 -13.62097 -13.46592 -13.15695 -13.02928 -12.81757 -12.60371 -12.44870 -12.21598 -12.15435 -12.13607 -11.86813 -11.76951 -11.45169 -11.29257 -11.09559 -11.02177 -10.73926 -10.71010 -10.17660 -10.01955 -9.83576 -9.61826 -9.47397 -9.11667 -8.84833 -8.81335 -8.29399 -7.63658 -7.05896 -6.19579 -4.35552 2.30393 2.94467 3.15255 3.25484 3.30563 3.34026 3.53049 3.98378 4.09760 4.28786 4.45259 4.71663 5.01409 5.03957 5.04828 5.08684 5.16107 5.18658 5.22916 5.32638 5.33628 5.47743 5.70036 5.76150 5.83621 5.87148 5.94082 6.00422 6.08102 6.19563 6.28346 6.30905 6.32838 6.61326 6.65474 6.65972 6.73172 6.83927 7.35390 7.43394 7.67954 7.70084 7.77657 7.91911 8.18812 8.65164 8.82764 8.92145 9.36070 9.55918 9.68123 10.82734 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.003448 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.476132 B = 8118.452301 C = 9246.212413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 C -0.095 4.095 3 C 0.274 3.726 4 N -0.642 5.642 5 C 0.534 3.466 6 O -0.500 6.500 7 C 0.271 3.729 8 H 0.070 0.930 9 C -0.542 4.542 10 H 0.074 0.926 11 C 0.078 3.922 12 N -0.851 5.851 13 Si 0.898 3.102 14 H -0.269 1.269 15 H -0.282 1.282 16 H -0.283 1.283 17 N -0.660 5.660 18 C 0.646 3.354 19 O -0.591 6.591 20 O -0.374 6.374 21 C 0.136 3.864 22 C -0.180 4.180 23 C -0.139 4.139 24 C -0.181 4.181 25 N -0.462 5.462 26 C 0.184 3.816 27 N -0.463 5.463 28 C 0.080 3.920 29 H 0.066 0.934 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.412 0.588 33 H 0.268 0.732 34 H 0.407 0.593 35 H 0.054 0.946 36 H 0.060 0.940 37 H 0.090 0.910 38 H 0.063 0.937 39 H 0.072 0.928 40 H 0.062 0.938 41 H 0.093 0.907 42 H 0.059 0.941 43 H 0.056 0.944 44 H 0.203 0.797 45 H 0.070 0.930 46 H 0.083 0.917 47 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.594 -6.453 5.976 9.170 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.209 4.209 3 C 0.051 3.949 4 N -0.290 5.290 5 C 0.321 3.679 6 O -0.370 6.370 7 C 0.166 3.834 8 H 0.087 0.913 9 C -0.581 4.581 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.484 5.484 13 Si 0.725 3.275 14 H -0.193 1.193 15 H -0.208 1.208 16 H -0.209 1.209 17 N -0.317 5.317 18 C 0.399 3.601 19 O -0.483 6.483 20 O -0.289 6.289 21 C 0.099 3.901 22 C -0.237 4.237 23 C -0.196 4.196 24 C -0.238 4.238 25 N -0.184 5.184 26 C -0.098 4.098 27 N -0.151 5.151 28 C -0.063 4.063 29 H 0.085 0.915 30 H 0.077 0.923 31 H 0.095 0.905 32 H 0.248 0.752 33 H 0.078 0.922 34 H 0.243 0.757 35 H 0.073 0.927 36 H 0.079 0.921 37 H 0.109 0.891 38 H 0.082 0.918 39 H 0.091 0.909 40 H 0.082 0.918 41 H 0.111 0.889 42 H 0.078 0.922 43 H 0.075 0.925 44 H 0.219 0.781 45 H 0.089 0.911 46 H 0.101 0.899 47 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.388 -5.981 6.075 8.638 hybrid contribution -1.134 -0.462 -1.378 1.843 sum -2.521 -6.443 4.697 8.363 Atomic orbital electron populations 1.20029 0.87447 1.02508 1.02152 1.20216 0.93638 0.85835 1.21255 1.17385 0.89038 0.85042 1.03421 1.42867 1.10627 1.00766 1.74735 1.21255 0.85505 0.87670 0.73437 1.90628 1.16780 1.83859 1.45764 1.18224 0.83565 0.82949 0.98627 0.91259 1.21217 0.98946 1.48703 0.89201 0.90832 1.25127 0.95000 0.93348 0.99553 1.69941 1.12350 1.41658 1.24498 0.86439 0.80593 0.77919 0.82557 1.19330 1.20830 1.20938 1.45086 1.15997 1.09461 1.61167 1.18023 0.81621 0.82126 0.78368 1.90752 1.28788 1.75041 1.53735 1.86310 1.38947 1.25382 1.78274 1.21801 0.95873 0.79244 0.93209 1.22493 1.04110 1.02419 0.94714 1.21824 0.95732 0.99080 1.02956 1.22489 1.01475 1.00156 0.99671 1.70411 1.20283 1.07646 1.20026 1.24919 0.87076 0.91319 1.06468 1.44994 1.06954 1.06116 1.57030 1.21882 1.01939 0.79483 1.02996 0.91538 0.92323 0.90542 0.75205 0.92240 0.75676 0.92667 0.92082 0.89087 0.91763 0.90906 0.91843 0.88859 0.92215 0.92531 0.78075 0.91104 0.89860 0.90153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.73 9.99 36.01 0.36 -0.37 16 2 C -0.09 -1.50 6.98 -81.23 -0.57 -2.07 16 3 C 0.27 5.59 7.61 -153.27 -1.17 4.43 16 4 N -0.64 -13.66 5.36 -11.60 -0.06 -13.72 16 5 C 0.53 13.25 5.97 -10.98 -0.07 13.19 16 6 O -0.50 -13.86 14.51 5.53 0.08 -13.78 16 7 C 0.27 6.73 2.57 -70.23 -0.18 6.55 16 8 H 0.07 1.67 7.58 -51.93 -0.39 1.28 16 9 C -0.54 -14.00 8.66 -34.44 -0.30 -14.30 16 10 H 0.07 1.88 7.81 -52.49 -0.41 1.47 16 11 C 0.08 2.07 5.23 -17.82 -0.09 1.98 16 12 N -0.85 -23.66 11.59 55.43 0.64 -23.02 16 13 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 14 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 17 N -0.66 -16.64 4.36 -61.01 -0.27 -16.91 16 18 C 0.65 15.48 8.01 54.05 0.43 15.91 16 19 O -0.59 -14.50 11.54 -19.28 -0.22 -14.72 16 20 O -0.37 -8.02 9.94 -40.33 -0.40 -8.42 16 21 C 0.14 2.34 1.13 -90.62 -0.10 2.24 16 22 C -0.18 -2.86 8.37 37.16 0.31 -2.55 16 23 C -0.14 -1.86 8.85 37.16 0.33 -1.53 16 24 C -0.18 -3.05 8.37 37.16 0.31 -2.74 16 25 N -0.46 -9.94 9.49 -13.62 -0.13 -10.07 16 26 C 0.18 2.91 12.55 -90.40 -1.13 1.78 16 27 N -0.46 -6.24 3.16 -121.12 -0.38 -6.63 16 28 C 0.08 0.62 11.01 59.85 0.66 1.28 16 29 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.53 7.24 -51.93 -0.38 0.15 16 31 H 0.08 0.84 7.63 -51.93 -0.40 0.45 16 32 H 0.41 7.58 7.99 -40.82 -0.33 7.25 16 33 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.41 10.79 7.59 -40.82 -0.31 10.48 16 35 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 37 H 0.09 1.69 5.88 -51.93 -0.31 1.38 16 38 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 39 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 41 H 0.09 1.86 5.88 -51.93 -0.31 1.55 16 42 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 43 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 44 H 0.20 2.29 8.06 -52.49 -0.42 1.87 16 45 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 46 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 47 H 0.08 0.51 7.21 -51.93 -0.37 0.14 16 LS Contribution 388.72 15.07 5.86 5.86 Total: -1.00 -35.60 388.72 -8.09 -43.69 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -6.98 Total: 18.21 kcal Atomic # 6 Polarization: 24.98 SS G_CDS: -1.21 Total: 23.77 kcal Atomic # 7 Polarization: -70.14 SS G_CDS: -0.20 Total: -70.34 kcal Atomic # 8 Polarization: -36.38 SS G_CDS: -0.54 Total: -36.93 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.60 -8.09 -43.69 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180779278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.559 kcal (2) G-P(sol) polarization free energy of solvation -35.597 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.688 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds