Wall clock time and date at job start Tue Mar 31 2020 20:36:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35227 * 126.64919 * 2 1 4 4 N 1.40465 * 126.05210 * 359.92934 * 3 2 1 5 5 C 1.34774 * 120.00069 * 179.97438 * 4 3 2 6 6 O 1.21306 * 120.00090 * 359.97438 * 5 4 3 7 7 C 1.50706 * 120.00164 * 179.97438 * 5 4 3 8 8 H 1.09001 * 109.46953 * 59.99903 * 7 5 4 9 9 C 1.50698 * 109.47294 * 300.00461 * 7 5 4 10 10 H 1.07993 * 120.00472 * 119.99569 * 9 7 5 11 11 C 1.37882 * 119.99554 * 299.99464 * 9 7 5 12 12 N 1.31510 * 120.00063 * 0.02562 * 11 9 7 13 13 Si 1.86798 * 119.99716 * 180.02562 * 11 9 7 14 14 H 1.48504 * 109.47233 * 0.02562 * 13 11 9 15 15 H 1.48498 * 109.47163 * 120.00210 * 13 11 9 16 16 H 1.48507 * 109.47309 * 240.00085 * 13 11 9 17 17 N 1.46500 * 109.47187 * 179.97438 * 7 5 4 18 18 C 1.34768 * 120.00056 * 205.00100 * 17 7 5 19 19 O 1.21513 * 120.00374 * 0.02562 * 18 17 7 20 20 O 1.34641 * 119.99891 * 180.02562 * 18 17 7 21 21 C 1.45203 * 116.99751 * 180.02562 * 20 18 17 22 22 C 1.52996 * 109.47248 * 60.00019 * 21 20 18 23 23 C 1.53001 * 109.47210 * 180.02562 * 21 20 18 24 24 C 1.53001 * 109.47006 * 299.99705 * 21 20 18 25 25 N 1.34376 * 107.89360 * 180.18843 * 3 2 1 26 26 C 1.30542 * 109.31539 * 359.62188 * 25 3 2 27 27 N 1.34973 * 108.85269 * 0.37748 * 26 25 3 28 28 C 1.46498 * 126.38150 * 179.76432 * 27 26 25 29 29 H 1.08997 * 109.46591 * 90.02563 * 1 2 3 30 30 H 1.08997 * 109.46756 * 210.02351 * 1 2 3 31 31 H 1.09001 * 109.47207 * 330.02832 * 1 2 3 32 32 H 0.97005 * 120.00136 * 359.97438 * 4 3 2 33 33 H 0.97001 * 119.99949 * 179.97438 * 12 11 9 34 34 H 0.97001 * 119.99547 * 25.00272 * 17 7 5 35 35 H 1.08999 * 109.47388 * 59.99904 * 22 21 20 36 36 H 1.09002 * 109.47189 * 180.02562 * 22 21 20 37 37 H 1.08998 * 109.47287 * 299.99461 * 22 21 20 38 38 H 1.09011 * 109.46735 * 59.99769 * 23 21 20 39 39 H 1.08991 * 109.47535 * 179.97438 * 23 21 20 40 40 H 1.09004 * 109.46945 * 300.00479 * 23 21 20 41 41 H 1.09001 * 109.46869 * 60.00364 * 24 21 20 42 42 H 1.09002 * 109.47137 * 179.97438 * 24 21 20 43 43 H 1.08998 * 109.47551 * 299.99883 * 24 21 20 44 44 H 1.07998 * 125.57528 * 180.14968 * 26 25 3 45 45 H 1.09006 * 109.47576 * 270.00324 * 28 27 26 46 46 H 1.09000 * 109.47353 * 30.00334 * 28 27 26 47 47 H 1.09002 * 109.47724 * 150.00533 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3142 1.0849 0.0000 4 7 1.8966 2.4260 -0.0014 5 6 2.8106 3.4165 -0.0007 6 8 3.9939 3.1498 0.0016 7 6 2.3625 4.8554 -0.0028 8 1 1.7623 5.0503 0.8860 9 6 1.5369 5.1227 -1.2349 10 1 0.5138 5.4544 -1.1379 11 6 2.0879 4.9437 -2.4860 12 7 3.3337 4.5392 -2.6042 13 14 1.0648 5.2756 -4.0133 14 1 -0.2949 5.7178 -3.6118 15 1 1.7125 6.3400 -4.8212 16 1 0.9636 4.0336 -4.8210 17 7 3.5360 5.7324 -0.0009 18 6 3.4415 6.9834 0.4912 19 8 2.3831 7.3840 0.9338 20 8 4.5200 7.7895 0.4924 21 6 4.3451 9.1236 1.0383 22 6 3.9055 9.0228 2.5003 23 6 5.6687 9.8865 0.9547 24 6 3.2767 9.8675 0.2346 25 7 3.5866 0.6529 -0.0042 26 6 3.5994 -0.6525 0.0013 27 7 2.3264 -1.1011 0.0009 28 6 1.8989 -2.5023 0.0012 29 1 -0.3632 -0.0005 -1.0277 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3634 0.8902 0.5134 32 1 0.9503 2.6394 -0.0029 33 1 3.7212 4.4129 -3.4844 34 1 4.3810 5.4125 -0.3539 35 1 4.6666 8.4928 3.0729 36 1 3.7738 10.0243 2.9100 37 1 2.9624 8.4796 2.5596 38 1 5.9814 9.9583 -0.0871 39 1 5.5374 10.8880 1.3640 40 1 6.4302 9.3566 1.5269 41 1 2.3336 9.3242 0.2938 42 1 3.1451 10.8689 0.6447 43 1 3.5898 9.9394 -0.8070 44 1 4.4839 -1.2721 0.0021 45 1 1.7934 -2.8503 -1.0264 46 1 2.6438 -3.1094 0.5156 47 1 0.9413 -2.5900 0.5145 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001180779278.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:36:55 Heat of formation + Delta-G solvation = -71.508376 kcal Electronic energy + Delta-G solvation = -30554.047138 eV Core-core repulsion = 26351.755179 eV Total energy + Delta-G solvation = -4202.291959 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.96216 -41.50805 -40.18422 -37.99664 -35.94692 -35.58458 -34.93597 -34.38901 -33.71572 -32.12764 -29.75863 -28.26401 -28.21209 -27.60432 -26.99596 -25.69602 -23.56837 -22.40916 -21.07607 -20.94173 -20.48409 -19.15661 -18.64102 -18.31227 -17.41223 -17.01284 -16.92530 -16.76106 -16.61034 -16.36956 -15.59979 -15.40916 -15.30203 -15.12002 -14.85423 -14.35860 -14.31864 -14.13899 -13.94657 -13.78456 -13.42508 -13.23992 -13.22005 -13.11288 -12.98924 -12.91425 -12.76051 -12.74923 -12.70778 -12.37461 -12.19668 -12.12071 -11.80474 -11.35868 -11.21022 -11.10383 -10.80749 -10.73785 -10.15834 -10.11497 -9.58898 -8.45224 -8.20923 -6.43315 1.08289 1.34110 1.40126 1.49888 1.51883 1.94692 1.99173 2.16562 2.36534 2.54844 2.79522 3.09060 3.69021 3.88445 3.90668 3.91418 4.04492 4.05899 4.12956 4.25108 4.47630 4.51004 4.58991 4.68071 4.68923 4.74108 4.82327 4.83730 4.84269 4.87298 4.93283 4.95476 5.01762 5.14989 5.34877 5.39549 5.44170 5.47445 5.60336 5.66615 5.80555 5.95480 6.18128 6.34236 6.58962 6.75404 6.94896 7.31033 7.39946 7.75704 7.82196 8.79399 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.013553 B = 0.003448 C = 0.003028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2065.476132 B = 8118.452301 C = 9246.212413 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 C -0.068 4.068 3 C 0.209 3.791 4 N -0.635 5.635 5 C 0.533 3.467 6 O -0.540 6.540 7 C 0.269 3.731 8 H 0.067 0.933 9 C -0.545 4.545 10 H 0.074 0.926 11 C 0.037 3.963 12 N -0.879 5.879 13 Si 0.958 3.042 14 H -0.258 1.258 15 H -0.288 1.288 16 H -0.280 1.280 17 N -0.669 5.669 18 C 0.645 3.355 19 O -0.601 6.601 20 O -0.384 6.384 21 C 0.117 3.883 22 C -0.174 4.174 23 C -0.132 4.132 24 C -0.176 4.176 25 N -0.532 5.532 26 C 0.183 3.817 27 N -0.453 5.453 28 C 0.070 3.930 29 H 0.074 0.926 30 H 0.093 0.907 31 H 0.079 0.921 32 H 0.421 0.579 33 H 0.262 0.738 34 H 0.397 0.603 35 H 0.057 0.943 36 H 0.097 0.903 37 H 0.058 0.942 38 H 0.061 0.939 39 H 0.109 0.891 40 H 0.067 0.933 41 H 0.058 0.942 42 H 0.097 0.903 43 H 0.049 0.951 44 H 0.239 0.761 45 H 0.085 0.915 46 H 0.110 0.890 47 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.819 -7.285 6.202 10.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.185 4.185 3 C -0.011 4.011 4 N -0.283 5.283 5 C 0.321 3.679 6 O -0.414 6.414 7 C 0.164 3.836 8 H 0.085 0.915 9 C -0.584 4.584 10 H 0.092 0.908 11 C -0.168 4.168 12 N -0.513 5.513 13 Si 0.783 3.217 14 H -0.181 1.181 15 H -0.214 1.214 16 H -0.206 1.206 17 N -0.325 5.325 18 C 0.398 3.602 19 O -0.494 6.494 20 O -0.300 6.300 21 C 0.080 3.920 22 C -0.231 4.231 23 C -0.189 4.189 24 C -0.233 4.233 25 N -0.255 5.255 26 C -0.099 4.099 27 N -0.139 5.139 28 C -0.070 4.070 29 H 0.093 0.907 30 H 0.112 0.888 31 H 0.097 0.903 32 H 0.258 0.742 33 H 0.072 0.928 34 H 0.232 0.768 35 H 0.076 0.924 36 H 0.116 0.884 37 H 0.077 0.923 38 H 0.080 0.920 39 H 0.128 0.872 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.116 0.884 43 H 0.068 0.932 44 H 0.255 0.745 45 H 0.103 0.897 46 H 0.128 0.872 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.669 -6.862 6.321 9.704 hybrid contribution -0.779 -0.278 -1.363 1.594 sum -3.448 -7.141 4.958 9.352 Atomic orbital electron populations 1.20212 0.84345 1.04435 1.03240 1.20791 0.95340 0.85225 1.17130 1.17778 0.90079 0.85212 1.08067 1.42561 1.10405 1.01299 1.74070 1.21143 0.85435 0.88116 0.73229 1.90583 1.18291 1.84452 1.48085 1.18241 0.83599 0.83479 0.98254 0.91472 1.21358 0.98947 1.48344 0.89727 0.90838 1.25790 0.95793 0.93134 1.02089 1.70098 1.13835 1.42924 1.24486 0.85508 0.79565 0.77486 0.79144 1.18137 1.21397 1.20612 1.45084 1.15532 1.10213 1.61639 1.18069 0.82090 0.82031 0.78006 1.90743 1.29376 1.75237 1.54058 1.86317 1.37943 1.27218 1.78506 1.22433 0.98335 0.77450 0.93746 1.22426 1.02391 1.04173 0.94139 1.21859 0.93427 1.00269 1.03306 1.22431 0.99516 1.01659 0.99688 1.70236 1.21978 1.10858 1.22387 1.25499 0.89052 0.90250 1.05136 1.45346 1.05900 1.07877 1.54762 1.22348 1.03815 0.76135 1.04719 0.90692 0.88829 0.90252 0.74182 0.92838 0.76771 0.92355 0.88446 0.92257 0.91994 0.87214 0.91433 0.92338 0.88399 0.93162 0.74536 0.89652 0.87151 0.88104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.32 9.99 71.24 0.71 -0.61 16 2 C -0.07 -2.05 6.98 41.02 0.29 -1.77 16 3 C 0.21 8.75 7.61 131.05 1.00 9.75 16 4 N -0.63 -28.19 5.36 -309.00 -1.66 -29.84 16 5 C 0.53 27.93 5.97 87.66 0.52 28.46 16 6 O -0.54 -31.85 14.51 -3.11 -0.05 -31.90 16 7 C 0.27 14.04 2.57 43.50 0.11 14.16 16 8 H 0.07 3.43 7.58 -2.39 -0.02 3.41 16 9 C -0.55 -29.00 8.66 25.60 0.22 -28.78 16 10 H 0.07 3.82 7.81 -2.91 -0.02 3.80 16 11 C 0.04 2.02 5.23 84.66 0.44 2.46 16 12 N -0.88 -50.73 11.59 21.45 0.25 -50.48 16 13 Si 0.96 43.21 29.54 68.60 2.03 45.24 16 14 H -0.26 -11.05 7.11 99.48 0.71 -10.34 16 15 H -0.29 -13.16 7.11 99.48 0.71 -12.46 16 16 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 17 N -0.67 -35.54 4.36 -577.35 -2.52 -38.06 16 18 C 0.65 32.21 8.01 129.79 1.04 33.25 16 19 O -0.60 -30.63 11.54 19.80 0.23 -30.40 16 20 O -0.38 -16.95 9.94 -55.50 -0.55 -17.50 16 21 C 0.12 3.92 1.13 -10.79 -0.01 3.91 16 22 C -0.17 -5.37 8.37 71.98 0.60 -4.77 16 23 C -0.13 -3.24 8.85 71.98 0.64 -2.60 16 24 C -0.18 -5.81 8.37 71.98 0.60 -5.20 16 25 N -0.53 -23.61 9.49 -197.00 -1.87 -25.48 16 26 C 0.18 5.65 12.55 180.27 2.26 7.92 16 27 N -0.45 -11.19 3.16 -537.11 -1.70 -12.88 16 28 C 0.07 0.79 11.01 127.77 1.41 2.20 16 29 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 30 H 0.09 1.28 7.24 -2.39 -0.02 1.26 16 31 H 0.08 1.61 7.63 -2.39 -0.02 1.59 16 32 H 0.42 16.08 7.99 -92.70 -0.74 15.34 16 33 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 34 H 0.40 22.45 7.59 -92.71 -0.70 21.75 16 35 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 36 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 37 H 0.06 2.22 5.88 -2.39 -0.01 2.21 16 38 H 0.06 1.56 8.14 -2.38 -0.02 1.54 16 39 H 0.11 1.91 8.14 -2.39 -0.02 1.89 16 40 H 0.07 1.61 8.14 -2.38 -0.02 1.59 16 41 H 0.06 2.36 5.88 -2.39 -0.01 2.34 16 42 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 43 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.24 5.01 8.06 -2.91 -0.02 4.99 16 45 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 46 H 0.11 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.10 0.78 7.21 -2.39 -0.02 0.77 16 Total: -1.00 -83.59 388.72 3.57 -80.02 By element: Atomic # 1 Polarization: 53.36 SS G_CDS: -0.43 Total: 52.93 kcal Atomic # 6 Polarization: 48.53 SS G_CDS: 9.84 Total: 58.36 kcal Atomic # 7 Polarization: -149.26 SS G_CDS: -7.49 Total: -156.75 kcal Atomic # 8 Polarization: -79.43 SS G_CDS: -0.37 Total: -79.80 kcal Atomic # 14 Polarization: 43.21 SS G_CDS: 2.03 Total: 45.24 kcal Total: -83.59 3.57 -80.02 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001180779278.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.516 kcal (2) G-P(sol) polarization free energy of solvation -83.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.024 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.508 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds