Wall clock time and date at job start Tue Mar 31 2020 20:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 110.85372 * 2 1 4 4 O 1.21280 * 120.00049 * 239.29798 * 3 2 1 5 5 N 1.34776 * 119.99733 * 59.29965 * 3 2 1 6 6 C 1.47425 * 125.65010 * 359.97438 * 5 3 2 7 7 C 1.54914 * 104.83156 * 155.90982 * 6 5 3 8 8 C 1.55151 * 101.58161 * 37.00693 * 7 6 5 9 9 H 1.08999 * 110.71965 * 83.04149 * 8 7 6 10 10 N 1.46901 * 110.72025 * 206.13582 * 8 7 6 11 11 C 1.46902 * 110.99844 * 271.15764 * 10 8 7 12 12 C 1.50702 * 109.47027 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72353 * 12 11 10 15 15 C 1.37101 * 120.00327 * 180.27606 * 14 12 11 16 16 H 1.08001 * 119.99426 * 0.02562 * 15 14 12 17 17 C 1.38942 * 120.00412 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00005 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00057 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46646 * 60.00463 * 19 17 15 21 21 H 1.48504 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47259 * 300.00225 * 19 17 15 23 23 C 1.47326 * 125.61376 * 180.19900 * 5 3 2 24 24 C 1.54483 * 110.97134 * 236.21459 * 2 1 3 25 25 N 1.46766 * 105.47019 * 267.25975 * 24 2 1 26 26 C 1.34424 * 111.30178 * 342.97872 * 25 24 2 27 27 O 1.21276 * 124.94272 * 180.38955 * 26 25 24 28 28 C 1.51349 * 110.12865 * 0.44371 * 26 25 24 29 29 H 1.09005 * 109.47521 * 60.70283 * 1 2 3 30 30 H 1.09002 * 109.47369 * 180.69666 * 1 2 3 31 31 H 1.09001 * 109.47373 * 300.69694 * 1 2 3 32 32 H 1.08992 * 110.36837 * 37.07045 * 6 5 3 33 33 H 1.08997 * 110.36422 * 274.74576 * 6 5 3 34 34 H 1.09007 * 111.00162 * 278.93345 * 7 6 5 35 35 H 1.09002 * 111.00330 * 155.08454 * 7 6 5 36 36 H 1.00902 * 111.00235 * 147.21001 * 10 8 7 37 37 H 1.09004 * 109.47131 * 60.00016 * 11 10 8 38 38 H 1.09000 * 109.47732 * 300.00127 * 11 10 8 39 39 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 40 40 H 0.96996 * 120.00330 * 179.97438 * 18 17 15 41 41 H 1.08991 * 110.06347 * 61.67638 * 23 5 3 42 42 H 1.08999 * 109.84680 * 300.41631 * 23 5 3 43 43 H 1.09000 * 110.24318 * 26.25662 * 24 2 1 44 44 H 1.08993 * 110.24670 * 148.16935 * 24 2 1 45 45 H 0.96995 * 124.34728 * 162.96240 * 25 24 2 46 46 H 1.08998 * 110.47436 * 257.54309 * 28 26 25 47 47 H 1.08998 * 110.51923 * 134.87404 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0664 1.4083 0.0000 4 8 2.7834 1.7841 -0.9031 5 7 1.7494 2.2501 1.0036 6 6 0.8918 1.9263 2.1582 7 6 1.3268 2.9181 3.2659 8 6 1.6118 4.2009 2.4409 9 1 0.6896 4.7498 2.2507 10 7 2.5900 5.0544 3.1285 11 6 1.9218 5.9869 4.0462 12 6 2.9548 6.8433 4.7321 13 8 4.1318 6.6922 4.4809 14 7 2.5705 7.7814 5.6202 15 6 3.5098 8.5645 6.2400 16 1 4.5577 8.4298 6.0163 17 6 3.1136 9.5312 7.1560 18 7 1.8385 9.6947 7.4286 19 14 4.3935 10.5976 8.0010 20 1 5.1538 11.3615 6.9794 21 1 3.7178 11.5431 8.9255 22 1 5.3264 9.7355 8.7702 23 6 2.1992 3.6477 1.1255 24 6 2.0829 -0.8022 -1.1989 25 7 2.2861 -2.1662 -0.6969 26 6 2.2969 -2.1955 0.6469 27 8 2.4538 -3.1929 1.3188 28 6 2.0834 -0.8030 1.2000 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0125 31 1 -0.3634 0.5246 0.8837 32 1 1.0617 0.8992 2.4807 33 1 -0.1577 2.0767 1.9052 34 1 2.2282 2.5697 3.7703 35 1 0.5205 3.0841 3.9803 36 1 3.1664 5.5505 2.4654 37 1 1.3632 5.4235 4.7936 38 1 1.2376 6.6224 3.4840 39 1 1.6292 7.9025 5.8210 40 1 1.5618 10.3693 8.0683 41 1 1.8343 4.2329 0.2815 42 1 3.2880 3.6843 1.1615 43 1 1.3614 -0.8045 -2.0160 44 1 3.0291 -0.3768 -1.5331 45 1 2.3980 -2.9464 -1.2623 46 1 3.0281 -0.3787 1.5398 47 1 1.3580 -0.8219 2.0133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184500039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:13 Heat of formation + Delta-G solvation = -92.966726 kcal Electronic energy + Delta-G solvation = -29200.058077 eV Core-core repulsion = 24996.835614 eV Total energy + Delta-G solvation = -4203.222463 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.58721 -39.87954 -38.53964 -37.81748 -36.76117 -34.96318 -33.89278 -33.21324 -31.28250 -30.70583 -29.11815 -29.00320 -26.90167 -26.27387 -24.53023 -23.77243 -22.14925 -21.15369 -20.68012 -19.41321 -19.25780 -18.01459 -17.93677 -17.07091 -16.77766 -16.23065 -16.14020 -15.80275 -15.32816 -15.17555 -14.83433 -14.62369 -14.40098 -14.23220 -13.89745 -13.84859 -13.67303 -13.60659 -13.23223 -13.16400 -12.88687 -12.64039 -12.47444 -12.40797 -11.93943 -11.78494 -11.75467 -11.57004 -11.39637 -11.28796 -11.09797 -10.96833 -10.51552 -10.46461 -10.24482 -10.04327 -9.55508 -9.53429 -9.00676 -8.53815 -8.20689 -8.00130 -6.45017 -3.86011 2.12300 2.20499 2.43208 2.92151 3.18200 3.24225 3.28612 3.60659 3.72063 3.86060 3.99022 4.03426 4.18774 4.23675 4.34130 4.36585 4.49018 4.83524 4.90377 4.94475 4.97177 5.01534 5.04857 5.13018 5.15663 5.21011 5.27134 5.28459 5.34806 5.52270 5.53819 5.58382 5.69032 5.74373 5.87925 5.91088 6.03133 6.22213 6.28951 6.52179 7.07483 7.11084 7.49693 7.52112 7.71835 7.79539 8.02295 8.57116 9.14351 9.50042 10.01223 10.72501 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.001825 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.031576 B =15334.965113 C =15466.836974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.091 4.091 3 C 0.546 3.454 4 O -0.533 6.533 5 N -0.608 5.608 6 C 0.090 3.910 7 C -0.125 4.125 8 C 0.074 3.926 9 H 0.061 0.939 10 N -0.657 5.657 11 C 0.052 3.948 12 C 0.439 3.561 13 O -0.583 6.583 14 N -0.562 5.562 15 C -0.300 4.300 16 H 0.103 0.897 17 C 0.023 3.977 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.284 1.284 22 H -0.273 1.273 23 C 0.107 3.893 24 C 0.119 3.881 25 N -0.730 5.730 26 C 0.524 3.476 27 O -0.530 6.530 28 C -0.147 4.147 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.074 0.926 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.353 0.647 37 H 0.087 0.913 38 H 0.046 0.954 39 H 0.392 0.608 40 H 0.272 0.728 41 H 0.071 0.929 42 H 0.083 0.917 43 H 0.088 0.912 44 H 0.093 0.907 45 H 0.413 0.587 46 H 0.112 0.888 47 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.390 -19.033 -15.609 26.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.095 4.095 3 C 0.333 3.667 4 O -0.409 6.409 5 N -0.341 5.341 6 C -0.033 4.033 7 C -0.164 4.164 8 C -0.037 4.037 9 H 0.079 0.921 10 N -0.290 5.290 11 C -0.081 4.081 12 C 0.224 3.776 13 O -0.467 6.467 14 N -0.199 5.199 15 C -0.430 4.430 16 H 0.120 0.880 17 C -0.179 4.179 18 N -0.543 5.543 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.016 4.016 24 C -0.005 4.005 25 N -0.386 5.386 26 C 0.310 3.690 27 O -0.407 6.407 28 C -0.187 4.187 29 H 0.089 0.911 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.092 0.908 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.174 0.826 37 H 0.105 0.895 38 H 0.064 0.936 39 H 0.225 0.775 40 H 0.082 0.918 41 H 0.089 0.911 42 H 0.102 0.898 43 H 0.106 0.894 44 H 0.111 0.889 45 H 0.252 0.748 46 H 0.130 0.870 47 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.070 -19.702 -15.272 26.201 hybrid contribution -0.464 1.116 -0.243 1.232 sum -8.535 -18.586 -15.514 25.671 Atomic orbital electron populations 1.21978 0.90668 1.03588 1.03936 1.21603 0.98325 0.92622 0.96976 1.19604 0.80368 0.85761 0.80956 1.90739 1.37415 1.77105 1.35688 1.48335 1.49799 1.12794 1.23193 1.22702 0.94428 1.00503 0.85647 1.22914 1.03110 0.93766 0.96565 1.22559 0.94669 0.94669 0.91814 0.92091 1.60162 1.21039 1.25586 1.22247 1.21721 0.95810 0.94135 0.96436 1.19769 0.89500 0.83923 0.84361 1.90536 1.18246 1.71294 1.66623 1.41853 1.09972 1.31062 1.37007 1.19654 0.91070 1.12573 1.19685 0.87950 1.25265 0.96915 0.98158 0.97571 1.69599 1.14582 1.34984 1.35120 0.85911 0.79958 0.79337 0.78982 1.19899 1.20972 1.19855 1.22151 1.01028 0.81156 0.97217 1.22036 1.02880 0.80595 0.95037 1.46208 1.74270 1.10425 1.07673 1.20714 0.75124 0.90531 0.82648 1.90786 1.49934 1.37165 1.62783 1.22559 1.04729 0.93346 0.98065 0.91107 0.90987 0.90561 0.89902 0.90765 0.88998 0.89688 0.82613 0.89472 0.93644 0.77458 0.91792 0.91066 0.89846 0.89392 0.88860 0.74771 0.87020 0.86782 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.64 8.28 37.16 0.31 -0.33 16 2 C -0.09 -0.59 0.60 -154.03 -0.09 -0.68 16 3 C 0.55 5.19 6.55 -10.98 -0.07 5.12 16 4 O -0.53 -6.97 15.86 5.56 0.09 -6.88 16 5 N -0.61 -5.34 3.33 -170.28 -0.57 -5.91 16 6 C 0.09 0.57 5.08 -2.53 -0.01 0.56 16 7 C -0.12 -1.06 6.76 -24.58 -0.17 -1.22 16 8 C 0.07 0.75 3.25 -65.88 -0.21 0.54 16 9 H 0.06 0.57 7.86 -51.93 -0.41 0.16 16 10 N -0.66 -9.42 5.95 -106.05 -0.63 -10.05 16 11 C 0.05 0.82 6.04 -4.97 -0.03 0.79 16 12 C 0.44 9.93 7.82 -10.98 -0.09 9.84 16 13 O -0.58 -15.39 15.78 5.55 0.09 -15.30 16 14 N -0.56 -13.81 5.29 -10.96 -0.06 -13.86 16 15 C -0.30 -8.22 9.68 -14.93 -0.14 -8.36 16 16 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 17 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 18 N -0.90 -24.04 13.05 55.50 0.72 -23.31 16 19 Si 0.93 20.77 29.55 -169.99 -5.02 15.74 16 20 H -0.27 -6.07 7.11 56.52 0.40 -5.67 16 21 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 22 H -0.27 -6.08 7.11 56.52 0.40 -5.67 16 23 C 0.11 1.09 6.41 -2.90 -0.02 1.07 16 24 C 0.12 0.72 6.68 -3.12 -0.02 0.70 16 25 N -0.73 -4.74 6.24 -59.18 -0.37 -5.11 16 26 C 0.52 4.81 8.43 -10.83 -0.09 4.72 16 27 O -0.53 -7.10 18.03 5.56 0.10 -7.00 16 28 C -0.15 -1.02 4.75 -26.71 -0.13 -1.15 16 29 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.08 0.28 5.06 -51.93 -0.26 0.02 16 32 H 0.08 0.41 5.03 -51.93 -0.26 0.15 16 33 H 0.07 0.35 7.12 -51.93 -0.37 -0.02 16 34 H 0.09 0.94 8.14 -51.92 -0.42 0.52 16 35 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 36 H 0.35 5.36 8.08 -39.29 -0.32 5.04 16 37 H 0.09 1.26 8.14 -51.93 -0.42 0.84 16 38 H 0.05 0.65 8.08 -51.93 -0.42 0.23 16 39 H 0.39 9.14 7.90 -40.82 -0.32 8.82 16 40 H 0.27 6.89 8.31 -40.82 -0.34 6.55 16 41 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.08 1.00 7.93 -51.93 -0.41 0.59 16 43 H 0.09 0.37 7.91 -51.93 -0.41 -0.04 16 44 H 0.09 0.71 7.00 -51.93 -0.36 0.35 16 45 H 0.41 2.02 8.96 -40.82 -0.37 1.66 16 46 H 0.11 0.85 7.89 -51.93 -0.41 0.44 16 47 H 0.11 0.61 6.45 -51.93 -0.34 0.28 16 LS Contribution 379.82 15.07 5.72 5.72 Total: -1.00 -35.11 379.82 -7.49 -42.60 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.71 Total: 11.26 kcal Atomic # 6 Polarization: 12.96 SS G_CDS: -0.86 Total: 12.10 kcal Atomic # 7 Polarization: -57.34 SS G_CDS: -0.90 Total: -58.25 kcal Atomic # 8 Polarization: -29.46 SS G_CDS: 0.28 Total: -29.18 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -35.11 -7.49 -42.60 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184500039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.364 kcal (2) G-P(sol) polarization free energy of solvation -35.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds