Wall clock time and date at job start Tue Mar 31 2020 20:28:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.50703 * 110.85372 * 2 1 4 4 O 1.21280 * 120.00049 * 239.29798 * 3 2 1 5 5 N 1.34776 * 119.99733 * 59.29965 * 3 2 1 6 6 C 1.47425 * 125.65010 * 359.97438 * 5 3 2 7 7 C 1.54914 * 104.83156 * 155.90982 * 6 5 3 8 8 C 1.55151 * 101.58161 * 37.00693 * 7 6 5 9 9 H 1.08999 * 110.71965 * 83.04149 * 8 7 6 10 10 N 1.46901 * 110.72025 * 206.13582 * 8 7 6 11 11 C 1.46902 * 110.99844 * 271.15764 * 10 8 7 12 12 C 1.50702 * 109.47027 * 179.97438 * 11 10 8 13 13 O 1.21293 * 120.00255 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72353 * 12 11 10 15 15 C 1.37101 * 120.00327 * 180.27606 * 14 12 11 16 16 H 1.08001 * 119.99426 * 0.02562 * 15 14 12 17 17 C 1.38942 * 120.00412 * 180.02562 * 15 14 12 18 18 N 1.31414 * 120.00005 * 0.02562 * 17 15 14 19 19 Si 1.86803 * 120.00057 * 179.97438 * 17 15 14 20 20 H 1.48498 * 109.46646 * 60.00463 * 19 17 15 21 21 H 1.48504 * 109.47036 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47259 * 300.00225 * 19 17 15 23 23 C 1.47326 * 125.61376 * 180.19900 * 5 3 2 24 24 C 1.54483 * 110.97134 * 236.21459 * 2 1 3 25 25 N 1.46766 * 105.47019 * 267.25975 * 24 2 1 26 26 C 1.34424 * 111.30178 * 342.97872 * 25 24 2 27 27 O 1.21276 * 124.94272 * 180.38955 * 26 25 24 28 28 C 1.51349 * 110.12865 * 0.44371 * 26 25 24 29 29 H 1.09005 * 109.47521 * 60.70283 * 1 2 3 30 30 H 1.09002 * 109.47369 * 180.69666 * 1 2 3 31 31 H 1.09001 * 109.47373 * 300.69694 * 1 2 3 32 32 H 1.08992 * 110.36837 * 37.07045 * 6 5 3 33 33 H 1.08997 * 110.36422 * 274.74576 * 6 5 3 34 34 H 1.09007 * 111.00162 * 278.93345 * 7 6 5 35 35 H 1.09002 * 111.00330 * 155.08454 * 7 6 5 36 36 H 1.00902 * 111.00235 * 147.21001 * 10 8 7 37 37 H 1.09004 * 109.47131 * 60.00016 * 11 10 8 38 38 H 1.09000 * 109.47732 * 300.00127 * 11 10 8 39 39 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 40 40 H 0.96996 * 120.00330 * 179.97438 * 18 17 15 41 41 H 1.08991 * 110.06347 * 61.67638 * 23 5 3 42 42 H 1.08999 * 109.84680 * 300.41631 * 23 5 3 43 43 H 1.09000 * 110.24318 * 26.25662 * 24 2 1 44 44 H 1.08993 * 110.24670 * 148.16935 * 24 2 1 45 45 H 0.96995 * 124.34728 * 162.96240 * 25 24 2 46 46 H 1.08998 * 110.47436 * 257.54309 * 28 26 25 47 47 H 1.08998 * 110.51923 * 134.87404 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0664 1.4083 0.0000 4 8 2.7834 1.7841 -0.9031 5 7 1.7494 2.2501 1.0036 6 6 0.8918 1.9263 2.1582 7 6 1.3268 2.9181 3.2659 8 6 1.6118 4.2009 2.4409 9 1 0.6896 4.7498 2.2507 10 7 2.5900 5.0544 3.1285 11 6 1.9218 5.9869 4.0462 12 6 2.9548 6.8433 4.7321 13 8 4.1318 6.6922 4.4809 14 7 2.5705 7.7814 5.6202 15 6 3.5098 8.5645 6.2400 16 1 4.5577 8.4298 6.0163 17 6 3.1136 9.5312 7.1560 18 7 1.8385 9.6947 7.4286 19 14 4.3935 10.5976 8.0010 20 1 5.1538 11.3615 6.9794 21 1 3.7178 11.5431 8.9255 22 1 5.3264 9.7355 8.7702 23 6 2.1992 3.6477 1.1255 24 6 2.0829 -0.8022 -1.1989 25 7 2.2861 -2.1662 -0.6969 26 6 2.2969 -2.1955 0.6469 27 8 2.4538 -3.1929 1.3188 28 6 2.0834 -0.8030 1.2000 29 1 -0.3634 0.5029 -0.8962 30 1 -0.3634 -1.0276 0.0125 31 1 -0.3634 0.5246 0.8837 32 1 1.0617 0.8992 2.4807 33 1 -0.1577 2.0767 1.9052 34 1 2.2282 2.5697 3.7703 35 1 0.5205 3.0841 3.9803 36 1 3.1664 5.5505 2.4654 37 1 1.3632 5.4235 4.7936 38 1 1.2376 6.6224 3.4840 39 1 1.6292 7.9025 5.8210 40 1 1.5618 10.3693 8.0683 41 1 1.8343 4.2329 0.2815 42 1 3.2880 3.6843 1.1615 43 1 1.3614 -0.8045 -2.0160 44 1 3.0291 -0.3768 -1.5331 45 1 2.3980 -2.9464 -1.2623 46 1 3.0281 -0.3787 1.5398 47 1 1.3580 -0.8219 2.0133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184500039.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:12 Heat of formation + Delta-G solvation = -122.988642 kcal Electronic energy + Delta-G solvation = -29201.359925 eV Core-core repulsion = 24996.835614 eV Total energy + Delta-G solvation = -4204.524311 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -42.24078 -40.65966 -40.09511 -38.86609 -37.51890 -36.22757 -35.60973 -33.88943 -33.24297 -31.52756 -30.01701 -29.54573 -27.77151 -27.37031 -25.82257 -24.85041 -22.78797 -21.79004 -21.50020 -21.06711 -20.02756 -19.88190 -18.67810 -17.86640 -17.66691 -17.46722 -16.94937 -16.82423 -16.51848 -16.33365 -15.93586 -15.78358 -15.47888 -15.25953 -15.03585 -14.81026 -14.54627 -14.31858 -14.26416 -13.91983 -13.84230 -13.48780 -13.46893 -13.31248 -13.13864 -13.01595 -12.81166 -12.64543 -12.42209 -12.32585 -12.14803 -12.09557 -11.93601 -11.77883 -11.49198 -11.27423 -10.80190 -10.33150 -10.18184 -10.00184 -9.73601 -9.35596 -8.45670 -5.94018 1.40433 1.41410 1.42698 1.48564 1.53026 1.73793 2.07513 2.30036 2.34974 2.92474 3.02037 3.17033 3.21950 3.41723 3.53665 3.65439 3.70204 3.75311 3.89551 4.17705 4.27627 4.34973 4.37193 4.42909 4.49328 4.53839 4.58987 4.63310 4.68182 4.74358 4.78232 4.82049 4.87407 4.90440 5.03935 5.22023 5.25217 5.32631 5.42143 5.71038 5.90696 5.92628 6.11863 6.32372 6.43440 6.61762 6.99290 7.14213 7.14907 7.58287 8.14011 8.71257 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.028105 B = 0.001825 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 996.031576 B =15334.965113 C =15466.836974 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C 0.543 3.457 4 O -0.576 6.576 5 N -0.606 5.606 6 C 0.092 3.908 7 C -0.124 4.124 8 C 0.077 3.923 9 H 0.083 0.917 10 N -0.674 5.674 11 C 0.069 3.931 12 C 0.436 3.564 13 O -0.626 6.626 14 N -0.572 5.572 15 C -0.334 4.334 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.918 5.918 19 Si 0.991 3.009 20 H -0.273 1.273 21 H -0.270 1.270 22 H -0.273 1.273 23 C 0.109 3.891 24 C 0.119 3.881 25 N -0.716 5.716 26 C 0.520 3.480 27 O -0.578 6.578 28 C -0.143 4.143 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.100 0.900 33 H 0.105 0.895 34 H 0.069 0.931 35 H 0.104 0.896 36 H 0.344 0.656 37 H 0.110 0.890 38 H 0.072 0.928 39 H 0.398 0.602 40 H 0.278 0.722 41 H 0.073 0.927 42 H 0.056 0.944 43 H 0.113 0.887 44 H 0.076 0.924 45 H 0.421 0.579 46 H 0.102 0.898 47 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.866 -19.526 -15.747 27.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.084 4.084 3 C 0.332 3.668 4 O -0.455 6.455 5 N -0.339 5.339 6 C -0.030 4.030 7 C -0.162 4.162 8 C -0.033 4.033 9 H 0.101 0.899 10 N -0.307 5.307 11 C -0.064 4.064 12 C 0.223 3.777 13 O -0.513 6.513 14 N -0.210 5.210 15 C -0.464 4.464 16 H 0.095 0.905 17 C -0.212 4.212 18 N -0.559 5.559 19 Si 0.814 3.186 20 H -0.198 1.198 21 H -0.195 1.195 22 H -0.199 1.199 23 C -0.014 4.014 24 C -0.005 4.005 25 N -0.371 5.371 26 C 0.307 3.693 27 O -0.458 6.458 28 C -0.183 4.183 29 H 0.095 0.905 30 H 0.100 0.900 31 H 0.107 0.893 32 H 0.118 0.882 33 H 0.123 0.877 34 H 0.088 0.912 35 H 0.123 0.877 36 H 0.164 0.836 37 H 0.128 0.872 38 H 0.089 0.911 39 H 0.232 0.768 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.075 0.925 43 H 0.131 0.869 44 H 0.095 0.905 45 H 0.261 0.739 46 H 0.121 0.879 47 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -10.601 -20.201 -15.425 27.539 hybrid contribution 0.347 1.251 -0.277 1.328 sum -10.253 -18.950 -15.702 26.660 Atomic orbital electron populations 1.22014 0.88360 1.04553 1.04896 1.21563 0.99879 0.90320 0.96680 1.20117 0.79632 0.86721 0.80357 1.90723 1.39301 1.78078 1.37442 1.48413 1.49742 1.12073 1.23666 1.22913 0.95369 1.00827 0.83842 1.22921 1.02918 0.93137 0.97267 1.22638 0.94216 0.94743 0.91669 0.89919 1.60167 1.22440 1.25363 1.22747 1.21570 0.93796 0.93946 0.97041 1.20968 0.90323 0.83267 0.83111 1.90506 1.20803 1.72319 1.67647 1.41918 1.09746 1.31614 1.37709 1.19600 0.90717 1.14514 1.21546 0.90505 1.25996 0.98896 0.98727 0.97578 1.69651 1.15603 1.35349 1.35312 0.85025 0.77737 0.77779 0.78018 1.19808 1.19463 1.19864 1.22009 0.99536 0.82363 0.97518 1.22098 1.02835 0.79899 0.95695 1.46192 1.72775 1.11051 1.07086 1.21034 0.74448 0.90654 0.83200 1.90762 1.52380 1.38808 1.63894 1.22561 1.04986 0.91884 0.98832 0.90515 0.90000 0.89289 0.88215 0.87718 0.91187 0.87742 0.83620 0.87174 0.91063 0.76842 0.91294 0.90823 0.92511 0.86880 0.90534 0.73857 0.87935 0.84700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.73 8.28 71.98 0.60 -0.13 16 2 C -0.08 -0.87 0.60 -51.87 -0.03 -0.90 16 3 C 0.54 9.66 6.55 87.66 0.57 10.24 16 4 O -0.58 -15.08 15.86 -3.03 -0.05 -15.13 16 5 N -0.61 -9.57 3.33 -811.04 -2.70 -12.27 16 6 C 0.09 0.85 5.08 86.86 0.44 1.29 16 7 C -0.12 -1.76 6.76 31.99 0.22 -1.54 16 8 C 0.08 1.41 3.25 46.10 0.15 1.56 16 9 H 0.08 1.22 7.86 -2.39 -0.02 1.20 16 10 N -0.67 -18.79 5.95 -489.45 -2.91 -21.70 16 11 C 0.07 2.08 6.04 85.56 0.52 2.60 16 12 C 0.44 19.83 7.82 87.66 0.69 20.52 16 13 O -0.63 -34.03 15.78 -3.07 -0.05 -34.07 16 14 N -0.57 -28.40 5.29 -306.98 -1.62 -30.02 16 15 C -0.33 -18.68 9.68 84.04 0.81 -17.86 16 16 H 0.08 4.61 7.16 -2.91 -0.02 4.59 16 17 C -0.01 -0.63 5.50 84.92 0.47 -0.17 16 18 N -0.92 -48.47 13.05 21.66 0.28 -48.19 16 19 Si 0.99 42.45 29.55 68.60 2.03 44.47 16 20 H -0.27 -11.58 7.11 99.48 0.71 -10.88 16 21 H -0.27 -10.88 7.11 99.48 0.71 -10.17 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.11 2.13 6.41 86.67 0.56 2.69 16 24 C 0.12 1.26 6.68 86.83 0.58 1.84 16 25 N -0.72 -8.41 6.24 -459.72 -2.87 -11.28 16 26 C 0.52 9.06 8.43 87.92 0.74 9.80 16 27 O -0.58 -15.40 18.03 -3.02 -0.05 -15.46 16 28 C -0.14 -1.74 4.75 30.61 0.15 -1.60 16 29 H 0.08 0.36 8.14 -2.38 -0.02 0.34 16 30 H 0.08 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.09 0.24 5.06 -2.39 -0.01 0.23 16 32 H 0.10 0.62 5.03 -2.39 -0.01 0.61 16 33 H 0.10 0.44 7.12 -2.39 -0.02 0.42 16 34 H 0.07 1.34 8.14 -2.38 -0.02 1.32 16 35 H 0.10 1.12 8.14 -2.39 -0.02 1.10 16 36 H 0.34 10.58 8.08 -89.69 -0.72 9.85 16 37 H 0.11 2.88 8.14 -2.38 -0.02 2.86 16 38 H 0.07 1.83 8.08 -2.39 -0.02 1.81 16 39 H 0.40 18.49 7.90 -92.71 -0.73 17.76 16 40 H 0.28 13.76 8.31 -92.71 -0.77 12.99 16 41 H 0.07 1.40 8.14 -2.39 -0.02 1.38 16 42 H 0.06 1.42 7.93 -2.39 -0.02 1.40 16 43 H 0.11 0.67 7.91 -2.39 -0.02 0.65 16 44 H 0.08 1.14 7.00 -2.39 -0.02 1.12 16 45 H 0.42 3.63 8.96 -92.71 -0.83 2.80 16 46 H 0.10 1.49 7.89 -2.39 -0.02 1.47 16 47 H 0.14 1.06 6.45 -2.39 -0.02 1.05 16 Total: -1.00 -79.29 379.82 -2.74 -82.03 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: -1.24 Total: 33.28 kcal Atomic # 6 Polarization: 21.89 SS G_CDS: 6.45 Total: 28.34 kcal Atomic # 7 Polarization: -113.64 SS G_CDS: -9.82 Total: -123.46 kcal Atomic # 8 Polarization: -64.51 SS G_CDS: -0.15 Total: -64.66 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.47 kcal Total: -79.29 -2.74 -82.03 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184500039.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.963 kcal (2) G-P(sol) polarization free energy of solvation -79.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.252 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds