Wall clock time and date at job start Tue Mar 31 2020 20:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52991 * 1 3 3 C 1.50706 * 110.88765 * 2 1 4 4 O 1.21275 * 119.99506 * 248.88955 * 3 2 1 5 5 N 1.34770 * 119.99983 * 68.88569 * 3 2 1 6 6 C 1.47023 * 125.65207 * 5.16909 * 5 3 2 7 7 C 1.54324 * 107.27459 * 181.01955 * 6 5 3 8 8 C 1.55167 * 102.93916 * 22.19340 * 7 6 5 9 9 H 1.09008 * 110.99904 * 82.60781 * 8 7 6 10 10 N 1.46900 * 111.00256 * 206.42124 * 8 7 6 11 11 C 1.46899 * 111.00043 * 273.54636 * 10 8 7 12 12 C 1.50694 * 109.46987 * 180.02562 * 11 10 8 13 13 O 1.21294 * 120.00211 * 359.97438 * 12 11 10 14 14 N 1.34785 * 120.00077 * 180.02562 * 12 11 10 15 15 C 1.37094 * 120.00027 * 180.02562 * 14 12 11 16 16 H 1.08003 * 120.00160 * 359.97438 * 15 14 12 17 17 C 1.38950 * 119.99729 * 179.97438 * 15 14 12 18 18 N 1.31413 * 120.00214 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99835 * 179.97438 * 17 15 14 20 20 H 1.48502 * 109.46836 * 90.00112 * 19 17 15 21 21 H 1.48506 * 109.47237 * 209.99814 * 19 17 15 22 22 H 1.48494 * 109.47408 * 330.00114 * 19 17 15 23 23 C 1.47430 * 125.64827 * 184.85896 * 5 3 2 24 24 C 1.54488 * 110.96546 * 123.80546 * 2 1 3 25 25 N 1.46760 * 105.47203 * 92.70488 * 24 2 1 26 26 C 1.34421 * 111.30185 * 17.28343 * 25 24 2 27 27 O 1.21278 * 124.94358 * 179.30542 * 26 25 24 28 28 C 1.51286 * 110.11385 * 359.16847 * 26 25 24 29 29 H 1.09002 * 109.47401 * 291.12344 * 1 2 3 30 30 H 1.09007 * 109.47251 * 51.12333 * 1 2 3 31 31 H 1.09003 * 109.47197 * 171.11919 * 1 2 3 32 32 H 1.08999 * 109.88059 * 300.44278 * 6 5 3 33 33 H 1.09005 * 109.88104 * 61.60402 * 6 5 3 34 34 H 1.08996 * 110.71953 * 140.55640 * 7 6 5 35 35 H 1.09001 * 110.72319 * 263.83641 * 7 6 5 36 36 H 1.00897 * 111.00098 * 37.50286 * 10 8 7 37 37 H 1.09001 * 109.47381 * 300.00594 * 11 10 8 38 38 H 1.09002 * 109.46726 * 60.00256 * 11 10 8 39 39 H 0.97006 * 119.99421 * 359.97438 * 14 12 11 40 40 H 0.96996 * 120.00116 * 180.02562 * 18 17 15 41 41 H 1.08998 * 110.36833 * 274.75424 * 23 5 3 42 42 H 1.09000 * 110.36253 * 37.07020 * 23 5 3 43 43 H 1.08991 * 110.24678 * 333.70297 * 24 2 1 44 44 H 1.08999 * 110.24404 * 211.70344 * 24 2 1 45 45 H 0.96998 * 124.35198 * 197.01144 * 25 24 2 46 46 H 1.08994 * 110.64309 * 225.36008 * 28 26 25 47 47 H 1.09002 * 110.38656 * 102.80754 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0672 1.4080 0.0000 4 8 2.6368 1.8396 -0.9798 5 7 1.9147 2.1875 1.0888 6 6 1.3439 1.7610 2.3748 7 6 1.3471 2.9903 3.3078 8 6 1.3964 4.1808 2.3138 9 1 0.4007 4.4178 1.9386 10 7 2.0167 5.3592 2.9339 11 6 1.0215 6.1541 3.6658 12 6 1.6933 7.3519 4.2862 13 8 2.8840 7.5260 4.1341 14 7 0.9712 8.2293 5.0111 15 6 1.5822 9.3193 5.5751 16 1 2.6423 9.4747 5.4389 17 6 0.8376 10.2241 6.3219 18 7 -0.4522 10.0347 6.4880 19 14 1.6702 11.7089 7.0910 20 1 1.6336 12.8463 6.1369 21 1 0.9572 12.0856 8.3380 22 1 3.0817 11.3752 7.4094 23 6 2.2984 3.6074 1.1896 24 6 2.0827 -0.8026 1.1987 25 7 2.2851 -2.1667 0.6966 26 6 2.3012 -2.1950 -0.6472 27 8 2.4639 -3.1915 -1.3191 28 6 2.0834 -0.8036 -1.1996 29 1 -0.3634 0.3703 0.9586 30 1 -0.3634 0.6450 -0.8001 31 1 -0.3634 -1.0154 -0.1587 32 1 0.3226 1.4092 2.2286 33 1 1.9536 0.9669 2.8059 34 1 0.4358 3.0238 3.9048 35 1 2.2291 2.9861 3.9483 36 1 2.7797 5.0909 3.5371 37 1 0.2461 6.4891 2.9769 38 1 0.5727 5.5428 4.4487 39 1 0.0190 8.0899 5.1330 40 1 -0.9720 10.6665 7.0090 41 1 3.3503 3.6978 1.4608 42 1 2.1031 4.1208 0.2481 43 1 1.3616 -0.8047 2.0160 44 1 3.0301 -0.3788 1.5317 45 1 2.3971 -2.9470 1.2618 46 1 1.3584 -0.8222 -2.0132 47 1 3.0273 -0.3783 -1.5406 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001184500041.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:28:16 Heat of formation + Delta-G solvation = -125.453912 kcal Electronic energy + Delta-G solvation = -29129.499802 eV Core-core repulsion = 24924.868588 eV Total energy + Delta-G solvation = -4204.631213 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -42.24717 -40.68028 -40.08858 -38.86494 -37.63052 -36.19240 -35.55426 -33.78287 -33.23986 -31.59769 -30.24392 -29.23301 -27.88317 -27.30588 -25.82507 -24.80279 -22.63620 -21.91343 -21.65826 -21.06780 -20.16602 -19.89887 -18.46173 -17.94362 -17.72379 -17.33318 -16.99246 -16.84696 -16.46143 -16.27662 -15.90100 -15.77004 -15.40871 -15.30892 -15.03915 -14.73205 -14.45732 -14.31786 -14.03152 -14.00748 -13.95416 -13.58481 -13.46535 -13.33328 -13.16712 -13.01664 -12.88492 -12.64886 -12.40560 -12.34938 -12.32378 -12.11650 -12.06902 -11.67308 -11.48849 -11.14983 -10.91132 -10.33157 -10.21913 -9.99034 -9.70462 -9.26387 -8.45141 -5.93204 1.39216 1.43045 1.43654 1.45226 1.55426 1.76790 2.08544 2.30763 2.31871 2.93725 3.03402 3.14858 3.22812 3.43274 3.53582 3.66691 3.71924 3.82301 3.98642 4.07194 4.28908 4.29866 4.40704 4.44396 4.47860 4.54324 4.55726 4.62110 4.66342 4.75650 4.79124 4.81710 4.88951 4.95225 5.07974 5.12370 5.20858 5.29285 5.43209 5.71877 5.91324 5.91483 6.12304 6.40606 6.44536 6.62702 7.00891 7.14887 7.15283 7.59485 8.15127 8.71988 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.039649 B = 0.001741 C = 0.001723 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 706.027733 B =16077.377113 C =16245.200770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.081 4.081 3 C 0.544 3.456 4 O -0.578 6.578 5 N -0.608 5.608 6 C 0.090 3.910 7 C -0.161 4.161 8 C 0.083 3.917 9 H 0.105 0.895 10 N -0.676 5.676 11 C 0.070 3.930 12 C 0.436 3.564 13 O -0.626 6.626 14 N -0.573 5.573 15 C -0.333 4.333 16 H 0.077 0.923 17 C -0.012 4.012 18 N -0.919 5.919 19 Si 0.990 3.010 20 H -0.273 1.273 21 H -0.271 1.271 22 H -0.274 1.274 23 C 0.117 3.883 24 C 0.111 3.889 25 N -0.713 5.713 26 C 0.521 3.479 27 O -0.580 6.580 28 C -0.138 4.138 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.080 0.920 32 H 0.104 0.896 33 H 0.098 0.902 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.349 0.651 37 H 0.104 0.896 38 H 0.078 0.922 39 H 0.397 0.603 40 H 0.277 0.723 41 H 0.062 0.938 42 H 0.062 0.938 43 H 0.133 0.867 44 H 0.081 0.919 45 H 0.423 0.577 46 H 0.113 0.887 47 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.659 -23.952 -4.976 24.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.085 4.085 3 C 0.332 3.668 4 O -0.458 6.458 5 N -0.341 5.341 6 C -0.031 4.031 7 C -0.200 4.200 8 C -0.028 4.028 9 H 0.123 0.877 10 N -0.308 5.308 11 C -0.062 4.062 12 C 0.223 3.777 13 O -0.513 6.513 14 N -0.210 5.210 15 C -0.463 4.463 16 H 0.095 0.905 17 C -0.211 4.211 18 N -0.559 5.559 19 Si 0.814 3.186 20 H -0.199 1.199 21 H -0.195 1.195 22 H -0.199 1.199 23 C -0.007 4.007 24 C -0.013 4.013 25 N -0.369 5.369 26 C 0.308 3.692 27 O -0.460 6.460 28 C -0.178 4.178 29 H 0.115 0.885 30 H 0.081 0.919 31 H 0.099 0.901 32 H 0.122 0.878 33 H 0.116 0.884 34 H 0.124 0.876 35 H 0.098 0.902 36 H 0.169 0.831 37 H 0.122 0.878 38 H 0.096 0.904 39 H 0.232 0.768 40 H 0.087 0.913 41 H 0.081 0.919 42 H 0.081 0.919 43 H 0.151 0.849 44 H 0.099 0.901 45 H 0.264 0.736 46 H 0.131 0.869 47 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -3.681 -23.554 -6.494 24.709 hybrid contribution 0.172 0.300 1.162 1.213 sum -3.509 -23.254 -5.332 24.114 Atomic orbital electron populations 1.21901 0.88526 1.04116 1.04727 1.21587 0.99662 0.90390 0.96855 1.20103 0.78395 0.87116 0.81185 1.90738 1.44272 1.75443 1.35299 1.48396 1.61352 1.11212 1.13150 1.22593 1.00912 0.98042 0.81580 1.23438 1.04819 0.93912 0.97845 1.22769 0.97793 0.88208 0.94072 0.87656 1.59824 1.10902 1.21532 1.38569 1.21512 0.94452 0.92385 0.97818 1.20992 0.87576 0.86633 0.82471 1.90508 1.17530 1.78180 1.65040 1.41924 1.11173 1.22027 1.45900 1.19640 0.94992 1.01991 1.29673 0.90468 1.25980 0.96086 1.01526 0.97552 1.69656 1.06536 1.38655 1.41097 0.84971 0.78057 0.77698 0.77883 1.19908 1.19524 1.19851 1.22056 0.98891 0.80572 0.99182 1.22526 1.02843 0.80240 0.95741 1.46139 1.72863 1.11198 1.06700 1.20988 0.74373 0.90348 0.83484 1.90749 1.52353 1.38864 1.64075 1.22326 1.04919 0.91778 0.98825 0.88495 0.91873 0.90066 0.87783 0.88418 0.87585 0.90231 0.83091 0.87780 0.90387 0.76849 0.91330 0.91925 0.91917 0.84923 0.90094 0.73554 0.86883 0.88026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.80 8.36 71.98 0.60 -0.20 16 2 C -0.08 -0.85 0.62 -51.87 -0.03 -0.88 16 3 C 0.54 9.57 6.51 87.66 0.57 10.14 16 4 O -0.58 -16.07 15.98 -3.01 -0.05 -16.12 16 5 N -0.61 -8.61 3.32 -811.35 -2.70 -11.31 16 6 C 0.09 0.52 5.34 86.73 0.46 0.98 16 7 C -0.16 -1.51 6.53 31.79 0.21 -1.31 16 8 C 0.08 1.40 3.33 46.39 0.15 1.56 16 9 H 0.11 1.63 7.92 -2.38 -0.02 1.61 16 10 N -0.68 -17.81 6.00 -488.00 -2.93 -20.74 16 11 C 0.07 2.04 6.04 85.56 0.52 2.56 16 12 C 0.44 19.32 7.82 87.65 0.69 20.00 16 13 O -0.63 -33.25 15.78 -3.07 -0.05 -33.30 16 14 N -0.57 -27.85 5.29 -306.98 -1.62 -29.47 16 15 C -0.33 -18.36 9.68 84.04 0.81 -17.54 16 16 H 0.08 4.57 7.16 -2.91 -0.02 4.55 16 17 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 18 N -0.92 -47.88 13.05 21.66 0.28 -47.59 16 19 Si 0.99 41.89 29.55 68.60 2.03 43.92 16 20 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 23 C 0.12 2.30 6.59 86.93 0.57 2.88 16 24 C 0.11 0.57 4.99 86.84 0.43 1.01 16 25 N -0.71 -6.50 6.24 -459.81 -2.87 -9.36 16 26 C 0.52 9.18 8.43 87.90 0.74 9.92 16 27 O -0.58 -15.73 18.03 -3.02 -0.05 -15.78 16 28 C -0.14 -2.15 5.66 30.59 0.17 -1.98 16 29 H 0.10 0.10 5.79 -2.39 -0.01 0.09 16 30 H 0.06 0.53 8.14 -2.38 -0.02 0.51 16 31 H 0.08 0.40 8.12 -2.39 -0.02 0.38 16 32 H 0.10 0.07 5.92 -2.39 -0.01 0.06 16 33 H 0.10 0.14 6.12 -2.38 -0.01 0.13 16 34 H 0.11 0.67 8.14 -2.39 -0.02 0.65 16 35 H 0.08 0.85 7.81 -2.39 -0.02 0.83 16 36 H 0.35 9.69 8.01 -89.70 -0.72 8.97 16 37 H 0.10 2.72 8.09 -2.39 -0.02 2.70 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.40 18.12 7.90 -92.70 -0.73 17.38 16 40 H 0.28 13.55 8.31 -92.71 -0.77 12.78 16 41 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.51 8.09 -2.39 -0.02 1.50 16 43 H 0.13 -0.28 6.88 -2.39 -0.02 -0.30 16 44 H 0.08 0.47 7.54 -2.39 -0.02 0.45 16 45 H 0.42 2.38 8.96 -92.71 -0.83 1.55 16 46 H 0.11 1.66 7.91 -2.39 -0.02 1.64 16 47 H 0.10 1.99 7.19 -2.39 -0.02 1.98 16 Total: -1.00 -80.99 380.25 -2.83 -83.81 By element: Atomic # 1 Polarization: 30.18 SS G_CDS: -1.24 Total: 28.95 kcal Atomic # 6 Polarization: 20.63 SS G_CDS: 6.37 Total: 27.00 kcal Atomic # 7 Polarization: -108.65 SS G_CDS: -9.83 Total: -118.48 kcal Atomic # 8 Polarization: -65.05 SS G_CDS: -0.15 Total: -65.20 kcal Atomic # 14 Polarization: 41.89 SS G_CDS: 2.03 Total: 43.92 kcal Total: -80.99 -2.83 -83.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184500041.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.640 kcal (2) G-P(sol) polarization free energy of solvation -80.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.814 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds