Wall clock time and date at job start Tue Mar 31 2020 20:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.35232 * 126.06766 * 2 1 4 4 N 1.34969 * 107.86208 * 179.83752 * 3 2 1 5 5 H 0.97006 * 125.97406 * 180.12256 * 4 3 2 6 6 N 1.40068 * 108.05043 * 0.42902 * 4 3 2 7 7 C 1.31226 * 108.16467 * 359.73170 * 6 4 3 8 8 N 1.40163 * 125.97118 * 180.02562 * 7 6 4 9 9 C 1.34781 * 119.99996 * 359.95910 * 8 7 6 10 10 O 1.21293 * 119.99560 * 0.02562 * 9 8 7 11 11 C 1.50692 * 119.99795 * 180.02562 * 9 8 7 12 12 N 1.46506 * 109.47258 * 180.02562 * 11 9 8 13 13 C 1.46497 * 120.00103 * 89.99642 * 12 11 9 14 14 C 1.50699 * 109.47124 * 90.00219 * 13 12 11 15 15 H 1.08004 * 119.99777 * 359.97438 * 14 13 12 16 16 C 1.37879 * 120.00049 * 180.02562 * 14 13 12 17 17 N 1.31513 * 120.00135 * 359.97438 * 16 14 13 18 18 Si 1.86799 * 120.00041 * 180.02562 * 16 14 13 19 19 H 1.48503 * 109.47059 * 359.97438 * 18 16 14 20 20 H 1.48497 * 109.47375 * 119.99536 * 18 16 14 21 21 H 1.48492 * 109.47300 * 239.99873 * 18 16 14 22 22 C 1.34772 * 119.99607 * 270.00358 * 12 11 9 23 23 O 1.21512 * 119.99730 * 179.97438 * 22 12 11 24 24 O 1.34633 * 120.00353 * 359.97438 * 22 12 11 25 25 C 1.45202 * 117.00074 * 180.02562 * 24 22 12 26 26 C 1.53002 * 109.46613 * 60.00474 * 25 24 22 27 27 C 1.53000 * 109.47174 * 180.02562 * 25 24 22 28 28 C 1.52998 * 109.47329 * 300.00668 * 25 24 22 29 29 H 1.09002 * 109.47152 * 269.68932 * 1 2 3 30 30 H 1.09001 * 109.46980 * 149.69032 * 1 2 3 31 31 H 1.09004 * 109.47113 * 29.69013 * 1 2 3 32 32 H 1.08006 * 126.06719 * 0.02562 * 3 2 1 33 33 H 0.97001 * 119.99702 * 179.97438 * 8 7 6 34 34 H 1.09005 * 109.47108 * 300.00127 * 11 9 8 35 35 H 1.08998 * 109.47233 * 59.99850 * 11 9 8 36 36 H 1.08998 * 109.47454 * 210.00581 * 13 12 11 37 37 H 1.09005 * 109.47215 * 330.00670 * 13 12 11 38 38 H 0.96993 * 120.00295 * 180.02562 * 17 16 14 39 39 H 1.08997 * 109.47459 * 60.00190 * 26 25 24 40 40 H 1.09007 * 109.46989 * 179.97438 * 26 25 24 41 41 H 1.08995 * 109.47063 * 299.99659 * 26 25 24 42 42 H 1.09002 * 109.47126 * 60.00508 * 27 25 24 43 43 H 1.08998 * 109.46952 * 180.02562 * 27 25 24 44 44 H 1.09000 * 109.46997 * 300.00436 * 27 25 24 45 45 H 1.08995 * 109.47485 * 59.99645 * 28 25 24 46 46 H 1.09007 * 109.47019 * 179.97438 * 28 25 24 47 47 H 1.09002 * 109.46968 * 299.99491 * 28 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3032 1.0931 0.0000 4 7 3.5853 0.6714 0.0036 5 1 4.3719 1.2392 0.0062 6 7 3.5816 -0.7292 -0.0040 7 6 2.3336 -1.1350 -0.0061 8 7 1.9014 -2.4683 -0.0129 9 6 2.8039 -3.4693 -0.0187 10 8 3.9902 -3.2162 -0.0176 11 6 2.3392 -4.9027 -0.0265 12 7 3.5025 -5.7932 -0.0311 13 6 4.0840 -6.2453 1.2352 14 6 3.4198 -7.5285 1.6632 15 1 2.6420 -7.9635 1.0532 16 6 3.8044 -8.1466 2.8342 17 7 4.7512 -7.6166 3.5773 18 14 2.9815 -9.7376 3.3644 19 1 1.9560 -10.1226 2.3617 20 1 4.0014 -10.8119 3.4676 21 1 2.3324 -9.5427 4.6857 22 6 4.0378 -6.1964 -1.2005 23 8 5.0029 -6.9347 -1.2043 24 8 3.5032 -5.7813 -2.3643 25 6 4.1310 -6.2557 -3.5845 26 6 4.0724 -7.7841 -3.6272 27 6 3.3913 -5.6825 -4.7949 28 6 5.5913 -5.8003 -3.6172 29 1 -0.3633 -0.0056 1.0277 30 1 -0.3633 -0.8872 -0.5186 31 1 -0.3633 0.8928 -0.5090 32 1 1.9719 2.1211 0.0004 33 1 0.9527 -2.6706 -0.0136 34 1 1.7386 -5.0948 0.8626 35 1 1.7381 -5.0849 -0.9173 36 1 5.1526 -6.4154 1.1042 37 1 3.9284 -5.4833 1.9990 38 1 5.0219 -8.0516 4.4009 39 1 3.0321 -8.1086 -3.6039 40 1 4.5433 -8.1403 -4.5435 41 1 4.5996 -8.1921 -2.7649 42 1 3.4334 -4.5937 -4.7643 43 1 3.8623 -6.0391 -5.7109 44 1 2.3508 -6.0066 -4.7718 45 1 6.1186 -6.2084 -2.7549 46 1 6.0627 -6.1569 -4.5331 47 1 5.6331 -4.7115 -3.5868 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001184845867.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:59:37 Heat of formation + Delta-G solvation = -30.218436 kcal Electronic energy + Delta-G solvation = -30567.127198 eV Core-core repulsion = 26366.625705 eV Total energy + Delta-G solvation = -4200.501493 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.38131 -40.17563 -39.12230 -36.82781 -34.90022 -34.50387 -33.53613 -32.48124 -32.30905 -30.53306 -28.24748 -27.18073 -27.05185 -26.67086 -26.42122 -23.37885 -22.78743 -20.88554 -20.43748 -19.81803 -18.69248 -17.90547 -17.21111 -17.02268 -16.28228 -16.09145 -15.90438 -15.44270 -15.24211 -14.88819 -14.40827 -14.04238 -13.94454 -13.76586 -13.67446 -13.43455 -13.14308 -12.91595 -12.84648 -12.37790 -12.30612 -12.14902 -11.91295 -11.81791 -11.58440 -11.55063 -11.22439 -11.11303 -10.88700 -10.87383 -10.83785 -10.59284 -10.57843 -10.14923 -9.94469 -9.77262 -9.48428 -9.19744 -8.78901 -8.42992 -8.23628 -7.78746 -6.03010 -4.08782 1.85806 2.43079 2.50724 2.91992 3.30029 3.30958 3.33370 3.38710 3.42591 3.78363 4.41251 4.56318 4.59296 4.82285 5.01351 5.04158 5.06102 5.20027 5.20364 5.31058 5.44303 5.47209 5.53646 5.63513 5.65393 5.71935 5.75364 5.84187 5.90251 5.93348 5.95687 6.08617 6.16667 6.18579 6.65530 6.68491 6.78064 6.83707 7.05338 7.18937 7.34367 7.48211 7.53397 7.89011 7.93033 8.21157 8.32638 8.44920 8.92262 9.23774 9.56651 11.05012 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.008306 B = 0.004127 C = 0.003073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3370.353166 B = 6783.643491 C = 9108.266045 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.261 4.261 3 C 0.069 3.931 4 N -0.479 5.479 5 H 0.441 0.559 6 N -0.271 5.271 7 C 0.306 3.694 8 N -0.643 5.643 9 C 0.486 3.514 10 O -0.472 6.472 11 C 0.106 3.894 12 N -0.561 5.561 13 C 0.265 3.735 14 C -0.531 4.531 15 H 0.061 0.939 16 C 0.063 3.937 17 N -0.891 5.891 18 Si 0.899 3.101 19 H -0.273 1.273 20 H -0.283 1.283 21 H -0.284 1.284 22 C 0.653 3.347 23 O -0.558 6.558 24 O -0.375 6.375 25 C 0.137 3.863 26 C -0.182 4.182 27 C -0.137 4.137 28 C -0.181 4.181 29 H 0.061 0.939 30 H 0.060 0.940 31 H 0.062 0.938 32 H 0.176 0.824 33 H 0.417 0.583 34 H 0.118 0.882 35 H 0.106 0.894 36 H 0.049 0.951 37 H 0.037 0.963 38 H 0.263 0.737 39 H 0.056 0.944 40 H 0.062 0.938 41 H 0.092 0.908 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.063 0.937 45 H 0.090 0.910 46 H 0.062 0.938 47 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.527 15.569 -12.263 22.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.275 4.275 3 C -0.079 4.079 4 N -0.188 5.188 5 H 0.285 0.715 6 N -0.101 5.101 7 C 0.048 3.952 8 N -0.297 5.297 9 C 0.270 3.730 10 O -0.339 6.339 11 C -0.023 4.023 12 N -0.299 5.299 13 C 0.147 3.853 14 C -0.570 4.570 15 H 0.079 0.921 16 C -0.140 4.140 17 N -0.530 5.530 18 Si 0.727 3.273 19 H -0.197 1.197 20 H -0.209 1.209 21 H -0.210 1.210 22 C 0.407 3.593 23 O -0.446 6.446 24 O -0.291 6.291 25 C 0.100 3.900 26 C -0.239 4.239 27 C -0.194 4.194 28 C -0.238 4.238 29 H 0.080 0.920 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.193 0.807 33 H 0.254 0.746 34 H 0.136 0.864 35 H 0.124 0.876 36 H 0.067 0.933 37 H 0.055 0.945 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.081 0.919 43 H 0.093 0.907 44 H 0.082 0.918 45 H 0.109 0.891 46 H 0.081 0.919 47 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -7.977 14.978 -12.148 20.870 hybrid contribution -1.278 -0.254 0.406 1.365 sum -9.255 14.724 -11.742 20.984 Atomic orbital electron populations 1.20016 0.89075 1.02157 1.01660 1.19771 0.97029 0.90304 1.20396 1.22227 0.84681 0.99537 1.01463 1.46153 1.06943 1.05515 1.60162 0.71505 1.78093 1.16854 0.87599 1.27572 1.19249 0.91256 0.85545 0.99137 1.43164 1.10864 1.01182 1.74441 1.22066 0.86839 0.88043 0.76057 1.90817 1.16037 1.83622 1.43448 1.21217 0.90351 0.85040 1.05643 1.46896 1.30844 1.46839 1.05275 1.19369 0.95500 0.94465 0.75927 1.21494 1.20937 1.07968 1.06567 0.92106 1.24929 0.95065 0.97679 0.96297 1.69958 1.29084 1.39649 1.14306 0.86429 0.79310 0.83307 0.78271 1.19735 1.20897 1.20990 1.17954 0.81396 0.79361 0.80595 1.90850 1.28014 1.39513 1.86254 1.86223 1.58349 1.70457 1.14109 1.21864 0.92783 0.94241 0.81132 1.22507 1.02719 0.94463 1.04257 1.21818 1.00741 1.01601 0.95276 1.22486 0.95664 1.01612 1.04088 0.91976 0.92130 0.91867 0.80712 0.74613 0.86431 0.87630 0.93319 0.94458 0.92698 0.92447 0.91855 0.88886 0.91898 0.90688 0.91770 0.89084 0.91868 0.92525 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.50 10.22 36.01 0.37 -0.14 16 2 C -0.26 -2.79 6.12 -104.88 -0.64 -3.43 16 3 C 0.07 0.62 11.89 -17.24 -0.21 0.41 16 4 N -0.48 -5.42 7.35 30.43 0.22 -5.20 16 5 H 0.44 3.53 8.96 -182.62 -1.64 1.90 16 6 N -0.27 -4.56 10.93 31.44 0.34 -4.22 16 7 C 0.31 4.50 7.78 -154.38 -1.20 3.30 16 8 N -0.64 -8.80 5.45 -11.13 -0.06 -8.86 16 9 C 0.49 8.67 7.87 -10.99 -0.09 8.58 16 10 O -0.47 -10.81 15.15 5.55 0.08 -10.73 16 11 C 0.11 1.81 5.89 -5.19 -0.03 1.78 16 12 N -0.56 -12.73 1.94 -182.25 -0.35 -13.08 16 13 C 0.26 7.16 5.16 -5.20 -0.03 7.13 16 14 C -0.53 -14.91 9.39 -34.44 -0.32 -15.23 16 15 H 0.06 1.68 7.81 -52.48 -0.41 1.27 16 16 C 0.06 1.78 5.46 -17.82 -0.10 1.69 16 17 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 18 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 20 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C 0.65 14.96 7.70 54.05 0.42 15.38 16 23 O -0.56 -14.31 11.46 -19.28 -0.22 -14.53 16 24 O -0.38 -7.18 8.71 -40.31 -0.35 -7.54 16 25 C 0.14 2.20 1.13 -90.62 -0.10 2.10 16 26 C -0.18 -2.86 8.37 37.16 0.31 -2.55 16 27 C -0.14 -1.63 8.85 37.16 0.33 -1.30 16 28 C -0.18 -2.96 8.37 37.16 0.31 -2.65 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.38 7.70 -51.93 -0.40 -0.02 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.18 0.77 8.06 -52.48 -0.42 0.35 16 33 H 0.42 3.85 8.22 -40.82 -0.34 3.51 16 34 H 0.12 1.79 8.07 -51.93 -0.42 1.37 16 35 H 0.11 1.48 7.38 -51.93 -0.38 1.09 16 36 H 0.05 1.50 7.42 -51.93 -0.39 1.11 16 37 H 0.04 1.04 8.07 -51.93 -0.42 0.62 16 38 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 40 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 41 H 0.09 1.80 5.88 -51.93 -0.31 1.49 16 42 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 44 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.09 1.81 5.88 -51.93 -0.31 1.50 16 46 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 47 H 0.06 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 394.37 15.07 5.94 5.94 Total: -1.00 -39.35 394.37 -8.02 -47.37 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -8.36 Total: 5.09 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: -0.98 Total: 15.06 kcal Atomic # 7 Polarization: -58.19 SS G_CDS: 0.89 Total: -57.30 kcal Atomic # 8 Polarization: -32.31 SS G_CDS: -0.49 Total: -32.80 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -39.35 -8.02 -47.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001184845867.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.152 kcal (2) G-P(sol) polarization free energy of solvation -39.352 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.370 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds