Wall clock time and date at job start Tue Mar 31 2020 21:46:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29948 * 126.28469 * 2 1 4 4 O 1.21303 * 110.24669 * 180.02562 * 3 2 1 5 5 C 1.33643 * 109.81437 * 0.02562 * 4 3 2 6 6 C 1.50692 * 126.55048 * 180.02562 * 5 4 3 7 7 C 1.53005 * 109.47320 * 269.97414 * 6 5 4 8 8 C 1.50692 * 109.47320 * 179.97438 * 7 6 5 9 9 O 1.21284 * 120.00283 * 0.02562 * 8 7 6 10 10 N 1.34781 * 120.00293 * 180.02562 * 8 7 6 11 11 C 1.47510 * 118.75145 * 359.73173 * 10 8 7 12 12 C 1.53198 * 111.23656 * 221.51140 * 11 10 8 13 13 C 1.51540 * 109.43395 * 40.26606 * 12 11 10 14 14 O 1.42157 * 108.76527 * 268.50698 * 13 12 11 15 15 C 1.38015 * 119.43661 * 87.21077 * 14 13 12 16 16 H 1.09010 * 109.46573 * 56.57579 * 15 14 13 17 17 C 1.52999 * 109.46746 * 176.56749 * 15 14 13 18 18 N 1.46504 * 109.46988 * 300.01447 * 17 15 14 19 19 C 1.36937 * 119.99643 * 179.97438 * 18 17 15 20 20 H 1.08001 * 120.00214 * 0.02562 * 19 18 17 21 21 C 1.38809 * 120.00134 * 179.97438 * 19 18 17 22 22 N 1.31626 * 119.99834 * 0.02562 * 21 19 18 23 23 Si 1.86797 * 120.00518 * 180.02562 * 21 19 18 24 24 H 1.48507 * 109.46881 * 0.02562 * 23 21 19 25 25 H 1.48497 * 109.47495 * 120.00247 * 23 21 19 26 26 H 1.48504 * 109.47152 * 240.00385 * 23 21 19 27 27 C 1.45117 * 118.76001 * 180.02562 * 10 8 7 28 28 N 1.31126 * 106.89467 * 0.02562 * 5 4 3 29 29 H 1.08992 * 109.47200 * 90.02355 * 1 2 3 30 30 H 1.09002 * 109.46770 * 210.02467 * 1 2 3 31 31 H 1.08999 * 109.47188 * 330.02070 * 1 2 3 32 32 H 1.08995 * 109.47428 * 29.97302 * 6 5 4 33 33 H 1.08999 * 109.47183 * 149.97495 * 6 5 4 34 34 H 1.09000 * 109.47216 * 300.00452 * 7 6 5 35 35 H 1.08999 * 109.46926 * 59.99925 * 7 6 5 36 36 H 1.08996 * 109.16713 * 342.02834 * 11 10 8 37 37 H 1.09003 * 109.16605 * 101.23432 * 11 10 8 38 38 H 1.09002 * 109.60985 * 280.23220 * 12 11 10 39 39 H 1.08999 * 109.43407 * 160.19663 * 12 11 10 40 40 H 1.09000 * 109.59055 * 148.72256 * 13 12 11 41 41 H 1.09002 * 109.58391 * 28.29048 * 13 12 11 42 42 H 1.08997 * 109.46715 * 60.01237 * 17 15 14 43 43 H 1.08994 * 109.47197 * 180.02562 * 17 15 14 44 44 H 0.96993 * 120.00241 * 0.02562 * 18 17 15 45 45 H 0.97002 * 119.99953 * 179.97438 * 22 21 19 46 46 H 1.09001 * 109.46071 * 210.72773 * 27 10 8 47 47 H 1.09004 * 109.46027 * 330.68416 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2761 1.0475 0.0000 4 8 3.4419 0.7124 -0.0005 5 6 3.5299 -0.6212 -0.0015 6 6 4.7969 -1.4369 -0.0018 7 6 5.2257 -1.7125 -1.4444 8 6 6.4931 -2.5277 -1.4447 9 8 7.0031 -2.8564 -0.3946 10 7 7.0601 -2.8916 -2.6121 11 6 6.4135 -2.4821 -3.8731 12 6 6.4317 -3.6182 -4.9006 13 6 6.1428 -4.9327 -4.2040 14 8 7.3749 -5.5208 -3.8080 15 6 7.9266 -5.1836 -2.5887 16 1 7.2089 -5.3924 -1.7951 17 6 9.1956 -6.0065 -2.3581 18 7 8.8608 -7.4328 -2.3653 19 6 9.8436 -8.3676 -2.1776 20 1 10.8654 -8.0536 -2.0237 21 6 9.5264 -9.7190 -2.1839 22 7 8.2810 -10.1018 -2.3709 23 14 10.8669 -10.9944 -1.9271 24 1 12.1717 -10.3103 -1.7399 25 1 10.5556 -11.8040 -0.7218 26 1 10.9391 -11.8827 -3.1150 27 6 8.2800 -3.6770 -2.5809 28 7 2.3031 -1.0840 -0.0020 29 1 -0.3633 -0.0004 -1.0276 30 1 -0.3633 -0.8898 0.5142 31 1 -0.3633 0.8902 0.5135 32 1 5.5842 -0.8855 0.5122 33 1 4.6207 -2.3821 0.5117 34 1 4.4385 -2.2639 -1.9585 35 1 5.4020 -0.7674 -1.9579 36 1 5.3804 -2.1998 -3.6702 37 1 6.9440 -1.6235 -4.2848 38 1 7.4119 -3.6666 -5.3751 39 1 5.6703 -3.4340 -5.6585 40 1 5.6216 -5.6021 -4.8884 41 1 5.5247 -4.7520 -3.3246 42 1 9.9131 -5.7977 -3.1515 43 1 9.6311 -5.7406 -1.3949 44 1 7.9432 -7.7148 -2.5038 45 1 8.0594 -11.0461 -2.3757 46 1 8.8858 -3.4416 -3.4560 47 1 8.8411 -3.4406 -1.6768 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001201112624.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:46:13 Heat of formation + Delta-G solvation = -20.216376 kcal Electronic energy + Delta-G solvation = -29497.319304 eV Core-core repulsion = 25297.251533 eV Total energy + Delta-G solvation = -4200.067771 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -46.66810 -41.68977 -39.77949 -37.20150 -36.91369 -36.23008 -35.77399 -34.31325 -32.74426 -32.61489 -30.41587 -30.03025 -28.18783 -26.98009 -26.15887 -24.67921 -24.11883 -22.81305 -22.29764 -22.19135 -20.02032 -19.24995 -19.20804 -18.70056 -18.22311 -17.73919 -17.52694 -17.10062 -16.51074 -16.49323 -15.92262 -15.47400 -15.26171 -15.13611 -14.91079 -14.77042 -14.56877 -14.47937 -14.18863 -13.87108 -13.76957 -13.62574 -13.49074 -13.29656 -13.16890 -13.07390 -12.79281 -12.59594 -12.38471 -12.29403 -12.24982 -12.09972 -12.06779 -11.96059 -11.81076 -11.44294 -11.03008 -10.98055 -10.82662 -10.52336 -9.63241 -8.99784 -7.93469 -5.22904 0.04125 1.13060 1.47139 1.49265 1.52791 1.59465 1.64567 2.00565 2.56863 2.64183 2.75511 3.03403 3.39982 3.41011 3.66490 3.70965 3.88533 3.95521 3.98164 4.03991 4.11285 4.17818 4.30148 4.39680 4.42714 4.48379 4.49769 4.57358 4.57524 4.58664 4.72708 4.75479 4.79389 4.88802 4.89709 4.91307 4.91736 5.09502 5.12208 5.15323 5.22818 5.48501 5.52464 6.26578 6.27946 6.78722 7.09236 7.09763 7.33682 8.08784 8.33477 9.30653 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017502 B = 0.002158 C = 0.002090 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1599.407372 B =12972.530094 C =13394.786127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 C 0.163 3.837 3 N -0.408 5.408 4 O 0.073 5.927 5 C 0.199 3.801 6 C -0.010 4.010 7 C -0.127 4.127 8 C 0.507 3.493 9 O -0.575 6.575 10 N -0.607 5.607 11 C 0.099 3.901 12 C -0.158 4.158 13 C 0.063 3.937 14 O -0.398 6.398 15 C 0.103 3.897 16 H 0.022 0.978 17 C 0.161 3.839 18 N -0.740 5.740 19 C -0.245 4.245 20 H 0.079 0.921 21 C -0.080 4.080 22 N -0.971 5.971 23 Si 0.979 3.021 24 H -0.264 1.264 25 H -0.293 1.293 26 H -0.292 1.292 27 C 0.095 3.905 28 N -0.503 5.503 29 H 0.105 0.895 30 H 0.099 0.901 31 H 0.098 0.902 32 H 0.121 0.879 33 H 0.109 0.891 34 H 0.117 0.883 35 H 0.134 0.866 36 H 0.111 0.889 37 H 0.096 0.904 38 H 0.074 0.926 39 H 0.118 0.882 40 H 0.090 0.910 41 H 0.045 0.955 42 H 0.032 0.968 43 H 0.036 0.964 44 H 0.374 0.626 45 H 0.251 0.749 46 H 0.101 0.899 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.488 26.803 -2.722 30.128 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.110 4.110 3 N -0.119 5.119 4 O 0.017 5.983 5 C -0.022 4.022 6 C -0.049 4.049 7 C -0.167 4.167 8 C 0.297 3.703 9 O -0.454 6.454 10 N -0.339 5.339 11 C -0.021 4.021 12 C -0.196 4.196 13 C -0.012 4.012 14 O -0.317 6.317 15 C 0.043 3.957 16 H 0.040 0.960 17 C 0.034 3.966 18 N -0.382 5.382 19 C -0.377 4.377 20 H 0.096 0.904 21 C -0.272 4.272 22 N -0.622 5.622 23 Si 0.807 3.193 24 H -0.188 1.188 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.030 4.030 28 N -0.238 5.238 29 H 0.123 0.877 30 H 0.118 0.882 31 H 0.116 0.884 32 H 0.140 0.860 33 H 0.127 0.873 34 H 0.135 0.865 35 H 0.152 0.848 36 H 0.129 0.871 37 H 0.115 0.885 38 H 0.092 0.908 39 H 0.137 0.863 40 H 0.109 0.891 41 H 0.063 0.937 42 H 0.050 0.950 43 H 0.053 0.947 44 H 0.205 0.795 45 H 0.060 0.940 46 H 0.119 0.881 47 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -13.575 27.016 -2.284 30.321 hybrid contribution 0.333 -1.186 0.421 1.301 sum -13.242 25.831 -1.863 29.087 Atomic orbital electron populations 1.20351 0.80600 1.05641 1.05639 1.26618 1.02111 0.82973 0.99262 1.74649 0.89753 1.24572 1.22966 1.85279 1.22220 1.25000 1.65834 1.28953 0.96979 0.81952 0.94273 1.19983 0.87551 0.98663 0.98716 1.21668 0.95017 1.02808 0.97208 1.21048 0.86310 0.79850 0.83133 1.90754 1.65121 1.57195 1.32359 1.48023 1.25732 1.52869 1.07320 1.22280 0.99768 0.97636 0.82441 1.22376 1.04813 0.93511 0.98901 1.22407 0.84879 0.95482 0.98481 1.86368 1.39051 1.69932 1.36378 1.21901 0.94357 0.94091 0.85331 0.96027 1.20781 0.94147 0.83575 0.98083 1.42424 1.07990 1.00829 1.86993 1.19728 0.90582 0.87722 1.39626 0.90356 1.25654 0.98727 0.99198 1.03646 1.69863 1.18618 1.15000 1.58718 0.84996 0.78718 0.78840 0.76723 1.18812 1.22025 1.21883 1.22085 0.87257 0.89297 1.04342 1.71985 1.00442 1.30019 1.21347 0.87691 0.88230 0.88381 0.86045 0.87273 0.86484 0.84809 0.87132 0.88550 0.90763 0.86340 0.89140 0.93700 0.95024 0.94651 0.79475 0.94048 0.88115 0.89750 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.63 10.51 71.24 0.75 0.12 16 2 C 0.16 2.92 8.22 138.46 1.14 4.05 16 3 N -0.41 -8.17 12.16 -60.31 -0.73 -8.90 16 4 O 0.07 1.32 11.31 74.83 0.85 2.16 16 5 C 0.20 3.30 7.77 88.38 0.69 3.98 16 6 C -0.01 -0.14 5.13 29.85 0.15 0.02 16 7 C -0.13 -1.46 4.02 29.85 0.12 -1.34 16 8 C 0.51 10.50 7.63 87.65 0.67 11.17 16 9 O -0.57 -17.21 15.41 -3.04 -0.05 -17.25 16 10 N -0.61 -11.85 2.20 -818.80 -1.80 -13.65 16 11 C 0.10 1.09 5.96 86.25 0.51 1.61 16 12 C -0.16 -2.28 5.78 30.18 0.17 -2.10 16 13 C 0.06 1.53 6.37 71.50 0.46 1.98 16 14 O -0.40 -13.98 9.18 -117.86 -1.08 -15.06 16 15 C 0.10 3.66 2.73 31.19 0.09 3.75 16 16 H 0.02 0.89 8.14 -2.38 -0.02 0.87 16 17 C 0.16 6.94 5.95 86.38 0.51 7.46 16 18 N -0.74 -40.65 5.49 -343.46 -1.89 -42.54 16 19 C -0.24 -14.40 9.99 84.03 0.84 -13.56 16 20 H 0.08 4.38 7.83 -2.91 -0.02 4.35 16 21 C -0.08 -4.83 5.50 84.86 0.47 -4.36 16 22 N -0.97 -62.13 13.06 21.65 0.28 -61.85 16 23 Si 0.98 47.73 29.55 68.60 2.03 49.76 16 24 H -0.26 -12.01 7.11 99.48 0.71 -11.30 16 25 H -0.29 -14.23 7.11 99.48 0.71 -13.53 16 26 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 27 C 0.09 2.46 4.86 87.24 0.42 2.89 16 28 N -0.50 -9.91 11.55 -303.21 -3.50 -13.41 16 29 H 0.10 0.70 8.14 -2.39 -0.02 0.68 16 30 H 0.10 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.10 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.12 1.49 8.10 -2.39 -0.02 1.47 16 33 H 0.11 1.84 8.10 -2.39 -0.02 1.82 16 34 H 0.12 1.11 7.40 -2.39 -0.02 1.09 16 35 H 0.13 0.74 8.05 -2.39 -0.02 0.72 16 36 H 0.11 0.63 5.88 -2.39 -0.01 0.61 16 37 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 38 H 0.07 1.27 8.01 -2.39 -0.02 1.25 16 39 H 0.12 0.98 8.14 -2.39 -0.02 0.96 16 40 H 0.09 2.11 8.14 -2.39 -0.02 2.09 16 41 H 0.04 1.08 7.39 -2.39 -0.02 1.06 16 42 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.37 22.18 7.53 -92.71 -0.70 21.48 16 45 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 46 H 0.10 2.28 8.12 -2.39 -0.02 2.26 16 47 H 0.08 2.39 7.27 -2.38 -0.02 2.37 16 Total: -1.00 -82.01 386.92 1.38 -80.62 By element: Atomic # 1 Polarization: 24.16 SS G_CDS: 0.29 Total: 24.46 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 6.99 Total: 15.66 kcal Atomic # 7 Polarization: -132.70 SS G_CDS: -7.64 Total: -140.34 kcal Atomic # 8 Polarization: -29.87 SS G_CDS: -0.28 Total: -30.15 kcal Atomic # 14 Polarization: 47.73 SS G_CDS: 2.03 Total: 49.76 kcal Total: -82.01 1.38 -80.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001201112624.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.406 kcal (2) G-P(sol) polarization free energy of solvation -82.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.600 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.622 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds