Wall clock time and date at job start Tue Mar 31 2020 21:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00394 * 2 1 4 4 H 1.09001 * 110.64569 * 26.85350 * 3 2 1 5 5 C 1.54327 * 110.86707 * 263.61202 * 3 2 1 6 6 N 1.47029 * 107.26790 * 219.37089 * 5 3 2 7 7 C 1.36939 * 125.64542 * 178.99180 * 6 5 3 8 8 H 1.08001 * 119.99891 * 179.97438 * 7 6 5 9 9 C 1.38809 * 120.00452 * 359.96960 * 7 6 5 10 10 N 1.31623 * 119.99639 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00533 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47193 * 89.99782 * 11 9 7 13 13 H 1.48496 * 109.47198 * 210.00144 * 11 9 7 14 14 H 1.48500 * 109.46476 * 329.99773 * 11 9 7 15 15 C 1.47418 * 108.70495 * 358.93814 * 6 5 3 16 16 C 1.54915 * 104.83107 * 24.13113 * 15 6 5 17 17 H 1.09002 * 111.00539 * 81.06145 * 16 15 6 18 18 N 1.46500 * 111.03417 * 204.89999 * 16 15 6 19 19 C 1.34773 * 120.00200 * 270.38731 * 18 16 15 20 20 O 1.21280 * 119.99742 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00375 * 180.02562 * 19 18 16 22 22 C 1.53000 * 109.47226 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47173 * 180.02562 * 22 21 19 24 24 C 1.50699 * 109.47540 * 180.02562 * 23 22 21 25 25 N 1.31128 * 126.55007 * 89.99766 * 24 23 22 26 26 C 1.34495 * 105.61402 * 180.02562 * 25 24 23 27 27 C 1.50700 * 126.28909 * 179.97438 * 26 25 24 28 28 N 1.29943 * 107.42406 * 0.02562 * 26 25 24 29 29 O 1.21304 * 110.25205 * 359.70250 * 28 26 25 30 30 H 1.08997 * 109.47704 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46718 * 300.00612 * 1 2 3 32 32 H 1.08992 * 109.47183 * 59.99958 * 1 2 3 33 33 H 1.08993 * 109.88730 * 338.78681 * 5 3 2 34 34 H 1.08996 * 109.88624 * 99.80405 * 5 3 2 35 35 H 0.97001 * 119.99838 * 179.97438 * 10 9 7 36 36 H 1.08995 * 110.37279 * 265.29528 * 15 6 5 37 37 H 1.08997 * 110.36990 * 142.96726 * 15 6 5 38 38 H 0.97001 * 120.00052 * 90.39778 * 18 16 15 39 39 H 1.09001 * 109.47222 * 300.00926 * 21 19 18 40 40 H 1.08997 * 109.46546 * 60.00773 * 21 19 18 41 41 H 1.09001 * 109.47469 * 300.00399 * 22 21 19 42 42 H 1.09005 * 109.46778 * 60.00512 * 22 21 19 43 43 H 1.09001 * 109.47041 * 300.00407 * 23 22 21 44 44 H 1.09005 * 109.47242 * 59.99909 * 23 22 21 45 45 H 1.09002 * 109.46835 * 90.00280 * 27 26 25 46 46 H 1.08998 * 109.47150 * 210.00103 * 27 26 25 47 47 H 1.09002 * 109.47411 * 330.00438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0267 0.4607 5 6 2.3805 1.7423 -1.4331 6 7 3.6670 2.4498 -1.3551 7 6 4.3516 2.9803 -2.4158 8 1 5.2931 3.4838 -2.2533 9 6 3.8356 2.8708 -3.6997 10 7 2.6879 2.2575 -3.8976 11 14 4.7698 3.5939 -5.1467 12 1 5.6950 2.5721 -5.6990 13 1 3.8079 4.0108 -6.1984 14 1 5.5491 4.7737 -4.6929 15 6 4.0972 2.4946 0.0542 16 6 3.3817 1.2957 0.7255 17 1 3.9172 0.3653 0.5364 18 7 3.2165 1.5202 2.1638 19 6 4.1771 1.1245 3.0223 20 8 5.1785 0.5831 2.6042 21 6 4.0069 1.3549 4.5019 22 6 5.2309 0.8172 5.2459 23 6 5.0579 1.0505 6.7480 24 6 6.2637 0.5214 7.4808 25 7 7.3566 1.1865 7.7686 26 6 8.1484 0.3169 8.4209 27 6 9.5251 0.5992 8.9652 28 7 7.5089 -0.8119 8.4947 29 8 6.4218 -0.7139 7.9655 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.4775 0.8663 -2.0744 34 1 1.6125 2.4074 -1.8280 35 1 2.3271 2.1814 -4.7948 36 1 3.7842 3.4305 0.5169 37 1 5.1787 2.3787 0.1246 38 1 2.4156 1.9534 2.4982 39 1 3.9056 2.4231 4.6940 40 1 3.1133 0.8368 4.8497 41 1 5.3327 -0.2509 5.0538 42 1 6.1244 1.3357 4.8978 43 1 4.9559 2.1185 6.9404 44 1 4.1644 0.5318 7.0957 45 1 9.4433 0.9610 9.9901 46 1 10.1169 -0.3160 8.9490 47 1 10.0107 1.3568 8.3501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001213855529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:06 Heat of formation + Delta-G solvation = 7.847078 kcal Electronic energy + Delta-G solvation = -28731.639870 eV Core-core repulsion = 24532.789022 eV Total energy + Delta-G solvation = -4198.850849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -45.86954 -39.82187 -38.23522 -36.50017 -35.99521 -35.57747 -34.04905 -32.81784 -31.75971 -29.70818 -29.08554 -28.41023 -26.95832 -26.13429 -24.49449 -23.93675 -22.96817 -21.43721 -20.64673 -20.48992 -19.89816 -18.38047 -17.82532 -17.34878 -16.78246 -16.41593 -16.04206 -15.58637 -15.40167 -14.76350 -14.58042 -14.44352 -14.24534 -14.00134 -13.96281 -13.70783 -13.36892 -13.26196 -13.03526 -12.79137 -12.59087 -12.32775 -12.11625 -11.93799 -11.88867 -11.58571 -11.55614 -11.32891 -11.24196 -11.10017 -11.02277 -10.81145 -10.76319 -10.17319 -10.15934 -10.01682 -9.81203 -9.73612 -9.13142 -8.77012 -8.58904 -6.89872 -5.74186 -3.09234 0.84049 1.91136 2.48112 2.77684 3.22841 3.36509 3.40707 3.45560 3.47130 3.73103 4.11469 4.41965 4.46804 4.53832 4.56947 4.78449 4.98149 4.99112 5.02362 5.07646 5.14516 5.17758 5.28078 5.35246 5.39076 5.47251 5.54916 5.56463 5.62798 5.66751 5.70003 5.77956 5.83901 5.89981 5.95606 6.04083 6.15462 6.51714 6.62184 6.84341 7.23874 7.46817 7.65974 7.70574 7.85127 7.87307 8.19387 8.39159 9.16733 9.76817 10.39736 11.37216 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.002017 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.987740 B =13879.198285 C =15288.801310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.378 6.378 3 C 0.056 3.944 4 H 0.063 0.937 5 C 0.165 3.835 6 N -0.600 5.600 7 C -0.228 4.228 8 H 0.081 0.919 9 C -0.008 4.008 10 N -0.923 5.923 11 Si 0.915 3.085 12 H -0.288 1.288 13 H -0.291 1.291 14 H -0.281 1.281 15 C 0.131 3.869 16 C 0.132 3.868 17 H 0.105 0.895 18 N -0.717 5.717 19 C 0.511 3.489 20 O -0.537 6.537 21 C -0.138 4.138 22 C -0.103 4.103 23 C -0.029 4.029 24 C 0.190 3.810 25 N -0.482 5.482 26 C 0.167 3.833 27 C -0.063 4.063 28 N -0.388 5.388 29 O 0.077 5.923 30 H 0.079 0.921 31 H 0.033 0.967 32 H 0.045 0.955 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.253 0.747 36 H 0.023 0.977 37 H 0.050 0.950 38 H 0.396 0.604 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.080 0.920 42 H 0.082 0.918 43 H 0.112 0.888 44 H 0.105 0.895 45 H 0.088 0.912 46 H 0.086 0.914 47 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.781 -1.753 24.887 24.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.296 6.296 3 C -0.003 4.003 4 H 0.081 0.919 5 C 0.039 3.961 6 N -0.328 5.328 7 C -0.356 4.356 8 H 0.098 0.902 9 C -0.204 4.204 10 N -0.570 5.570 11 Si 0.745 3.255 12 H -0.215 1.215 13 H -0.217 1.217 14 H -0.206 1.206 15 C 0.003 3.997 16 C 0.027 3.973 17 H 0.123 0.877 18 N -0.367 5.367 19 C 0.297 3.703 20 O -0.414 6.414 21 C -0.178 4.178 22 C -0.142 4.142 23 C -0.067 4.067 24 C -0.031 4.031 25 N -0.217 5.217 26 C -0.106 4.106 27 C -0.121 4.121 28 N -0.097 5.097 29 O 0.019 5.981 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.040 0.960 37 H 0.068 0.932 38 H 0.230 0.770 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.098 0.902 42 H 0.101 0.899 43 H 0.131 0.869 44 H 0.123 0.877 45 H 0.106 0.894 46 H 0.105 0.895 47 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 0.648 -2.662 24.747 24.898 hybrid contribution -0.411 0.816 -0.752 1.183 sum 0.237 -1.845 23.995 24.067 Atomic orbital electron populations 1.22707 0.81757 1.02051 0.99726 1.87912 1.19057 1.27592 1.95035 1.23843 0.92937 0.84028 0.99530 0.91936 1.21547 0.88261 0.97212 0.89037 1.44257 1.21499 1.66318 1.00751 1.19073 1.02396 1.29388 0.84754 0.90152 1.24826 0.97437 1.00723 0.97423 1.69940 1.19202 1.47253 1.20599 0.86071 0.78616 0.78606 0.82187 1.21487 1.21677 1.20640 1.21819 0.97812 0.93793 0.86229 1.22391 0.96346 1.00966 0.77643 0.87746 1.45960 1.21944 1.61549 1.07270 1.20514 0.83174 0.78297 0.88355 1.90742 1.28860 1.42336 1.79459 1.21610 1.00079 1.03791 0.92326 1.21336 0.98943 1.03605 0.90318 1.20342 0.89622 1.02772 0.94013 1.28816 0.97561 0.81479 0.95202 1.71916 1.02229 1.30992 1.16519 1.25931 1.00623 0.85423 0.98594 1.20145 0.86519 1.03944 1.01520 1.74641 0.94479 1.23154 1.17470 1.85292 1.27782 1.32730 1.52328 0.90251 0.94853 0.93657 0.91998 0.93360 0.93661 0.95975 0.93201 0.77020 0.88378 0.88459 0.90159 0.89922 0.86944 0.87697 0.89357 0.89490 0.88926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.85 101.05 1.10 1.56 16 2 O -0.38 -6.75 10.44 -35.23 -0.37 -7.11 16 3 C 0.06 1.02 3.07 -24.90 -0.08 0.94 16 4 H 0.06 0.99 7.68 -51.93 -0.40 0.59 16 5 C 0.16 3.95 5.15 -3.06 -0.02 3.94 16 6 N -0.60 -15.35 3.39 -170.07 -0.58 -15.93 16 7 C -0.23 -6.38 10.28 -15.06 -0.15 -6.53 16 8 H 0.08 2.18 7.83 -52.49 -0.41 1.77 16 9 C -0.01 -0.22 5.49 -17.43 -0.10 -0.32 16 10 N -0.92 -26.91 10.31 55.49 0.57 -26.33 16 11 Si 0.91 22.16 29.55 -169.99 -5.02 17.13 16 12 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 13 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 14 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 15 C 0.13 2.76 6.93 -2.53 -0.02 2.74 16 16 C 0.13 2.40 3.09 -65.78 -0.20 2.19 16 17 H 0.10 2.21 7.63 -51.93 -0.40 1.81 16 18 N -0.72 -9.49 5.22 -51.73 -0.27 -9.76 16 19 C 0.51 6.74 7.83 -10.99 -0.09 6.65 16 20 O -0.54 -9.72 15.67 5.56 0.09 -9.64 16 21 C -0.14 -1.01 5.70 -27.88 -0.16 -1.17 16 22 C -0.10 -0.84 4.49 -26.73 -0.12 -0.96 16 23 C -0.03 -0.16 5.84 -27.88 -0.16 -0.32 16 24 C 0.19 1.77 7.77 -13.06 -0.10 1.67 16 25 N -0.48 -5.32 11.55 -9.87 -0.11 -5.44 16 26 C 0.17 1.77 8.22 -156.37 -1.28 0.48 16 27 C -0.06 -0.41 10.51 36.01 0.38 -0.04 16 28 N -0.39 -4.55 12.16 30.90 0.38 -4.17 16 29 O 0.08 0.82 11.31 18.11 0.20 1.02 16 30 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.03 0.37 8.11 -51.93 -0.42 -0.05 16 32 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 33 H 0.06 1.70 7.30 -51.93 -0.38 1.32 16 34 H 0.05 1.25 7.50 -51.93 -0.39 0.86 16 35 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 36 H 0.02 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 38 H 0.40 3.87 8.54 -40.82 -0.35 3.52 16 39 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 41 H 0.08 0.77 8.10 -51.93 -0.42 0.35 16 42 H 0.08 0.86 8.10 -51.93 -0.42 0.44 16 43 H 0.11 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.09 0.49 8.14 -51.93 -0.42 0.06 16 47 H 0.09 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 394.80 15.07 5.95 5.95 Total: -1.00 -36.30 394.80 -7.54 -43.84 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -7.37 Total: -0.39 kcal Atomic # 6 Polarization: 11.84 SS G_CDS: -1.00 Total: 10.84 kcal Atomic # 7 Polarization: -61.63 SS G_CDS: -0.01 Total: -61.64 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.08 Total: -15.73 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -36.30 -7.54 -43.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213855529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.686 kcal (2) G-P(sol) polarization free energy of solvation -36.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.839 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.847 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds