Wall clock time and date at job start Tue Mar 31 2020 21:44:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42897 * 114.00394 * 2 1 4 4 H 1.09001 * 110.64569 * 26.85350 * 3 2 1 5 5 C 1.54327 * 110.86707 * 263.61202 * 3 2 1 6 6 N 1.47029 * 107.26790 * 219.37089 * 5 3 2 7 7 C 1.36939 * 125.64542 * 178.99180 * 6 5 3 8 8 H 1.08001 * 119.99891 * 179.97438 * 7 6 5 9 9 C 1.38809 * 120.00452 * 359.96960 * 7 6 5 10 10 N 1.31623 * 119.99639 * 0.02562 * 9 7 6 11 11 Si 1.86799 * 120.00533 * 180.02562 * 9 7 6 12 12 H 1.48492 * 109.47193 * 89.99782 * 11 9 7 13 13 H 1.48496 * 109.47198 * 210.00144 * 11 9 7 14 14 H 1.48500 * 109.46476 * 329.99773 * 11 9 7 15 15 C 1.47418 * 108.70495 * 358.93814 * 6 5 3 16 16 C 1.54915 * 104.83107 * 24.13113 * 15 6 5 17 17 H 1.09002 * 111.00539 * 81.06145 * 16 15 6 18 18 N 1.46500 * 111.03417 * 204.89999 * 16 15 6 19 19 C 1.34773 * 120.00200 * 270.38731 * 18 16 15 20 20 O 1.21280 * 119.99742 * 0.02562 * 19 18 16 21 21 C 1.50700 * 120.00375 * 180.02562 * 19 18 16 22 22 C 1.53000 * 109.47226 * 180.02562 * 21 19 18 23 23 C 1.52998 * 109.47173 * 180.02562 * 22 21 19 24 24 C 1.50699 * 109.47540 * 180.02562 * 23 22 21 25 25 N 1.31128 * 126.55007 * 89.99766 * 24 23 22 26 26 C 1.34495 * 105.61402 * 180.02562 * 25 24 23 27 27 C 1.50700 * 126.28909 * 179.97438 * 26 25 24 28 28 N 1.29943 * 107.42406 * 0.02562 * 26 25 24 29 29 O 1.21304 * 110.25205 * 359.70250 * 28 26 25 30 30 H 1.08997 * 109.47704 * 180.02562 * 1 2 3 31 31 H 1.09006 * 109.46718 * 300.00612 * 1 2 3 32 32 H 1.08992 * 109.47183 * 59.99958 * 1 2 3 33 33 H 1.08993 * 109.88730 * 338.78681 * 5 3 2 34 34 H 1.08996 * 109.88624 * 99.80405 * 5 3 2 35 35 H 0.97001 * 119.99838 * 179.97438 * 10 9 7 36 36 H 1.08995 * 110.37279 * 265.29528 * 15 6 5 37 37 H 1.08997 * 110.36990 * 142.96726 * 15 6 5 38 38 H 0.97001 * 120.00052 * 90.39778 * 18 16 15 39 39 H 1.09001 * 109.47222 * 300.00926 * 21 19 18 40 40 H 1.08997 * 109.46546 * 60.00773 * 21 19 18 41 41 H 1.09001 * 109.47469 * 300.00399 * 22 21 19 42 42 H 1.09005 * 109.46778 * 60.00512 * 22 21 19 43 43 H 1.09001 * 109.47041 * 300.00407 * 23 22 21 44 44 H 1.09005 * 109.47242 * 59.99909 * 23 22 21 45 45 H 1.09002 * 109.46835 * 90.00280 * 27 26 25 46 46 H 1.08998 * 109.47150 * 210.00103 * 27 26 25 47 47 H 1.09002 * 109.47411 * 330.00438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 1 1.3353 2.0267 0.4607 5 6 2.3805 1.7423 -1.4331 6 7 3.6670 2.4498 -1.3551 7 6 4.3516 2.9803 -2.4158 8 1 5.2931 3.4838 -2.2533 9 6 3.8356 2.8708 -3.6997 10 7 2.6879 2.2575 -3.8976 11 14 4.7698 3.5939 -5.1467 12 1 5.6950 2.5721 -5.6990 13 1 3.8079 4.0108 -6.1984 14 1 5.5491 4.7737 -4.6929 15 6 4.0972 2.4946 0.0542 16 6 3.3817 1.2957 0.7255 17 1 3.9172 0.3653 0.5364 18 7 3.2165 1.5202 2.1638 19 6 4.1771 1.1245 3.0223 20 8 5.1785 0.5831 2.6042 21 6 4.0069 1.3549 4.5019 22 6 5.2309 0.8172 5.2459 23 6 5.0579 1.0505 6.7480 24 6 6.2637 0.5214 7.4808 25 7 7.3566 1.1865 7.7686 26 6 8.1484 0.3169 8.4209 27 6 9.5251 0.5992 8.9652 28 7 7.5089 -0.8119 8.4947 29 8 6.4218 -0.7139 7.9655 30 1 -0.3634 -1.0276 0.0005 31 1 -0.3633 0.5140 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 2.4775 0.8663 -2.0744 34 1 1.6125 2.4074 -1.8280 35 1 2.3271 2.1814 -4.7948 36 1 3.7842 3.4305 0.5169 37 1 5.1787 2.3787 0.1246 38 1 2.4156 1.9534 2.4982 39 1 3.9056 2.4231 4.6940 40 1 3.1133 0.8368 4.8497 41 1 5.3327 -0.2509 5.0538 42 1 6.1244 1.3357 4.8978 43 1 4.9559 2.1185 6.9404 44 1 4.1644 0.5318 7.0957 45 1 9.4433 0.9610 9.9901 46 1 10.1169 -0.3160 8.9490 47 1 10.0107 1.3568 8.3501 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001213855529.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:44:06 Heat of formation + Delta-G solvation = -21.136611 kcal Electronic energy + Delta-G solvation = -28732.896698 eV Core-core repulsion = 24532.789022 eV Total energy + Delta-G solvation = -4200.107676 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -46.62183 -41.04699 -39.64337 -37.51089 -37.20709 -36.32772 -35.53577 -33.78651 -33.39234 -30.74243 -30.20999 -29.51458 -28.41406 -27.48720 -26.09370 -24.84601 -23.83832 -22.33970 -22.11025 -21.84860 -21.16116 -19.18408 -19.11699 -18.54053 -18.07927 -17.71531 -17.19285 -16.77765 -16.52214 -16.11621 -15.79921 -15.66149 -15.40232 -15.09573 -14.88862 -14.79589 -14.49252 -14.43037 -14.04302 -13.88787 -13.61564 -13.41996 -13.41032 -13.16759 -12.99787 -12.76002 -12.71457 -12.61993 -12.49600 -12.28262 -12.25357 -12.09075 -12.07300 -11.86872 -11.67483 -11.61156 -10.96792 -10.86137 -10.77764 -10.51916 -10.03082 -8.96706 -7.88118 -5.26105 0.11929 1.17244 1.44785 1.47549 1.55840 1.75444 1.84038 2.18325 2.46602 2.71485 2.80365 3.07671 3.31076 3.55764 3.68239 3.82126 3.92071 3.94969 4.07258 4.12170 4.14918 4.36044 4.42981 4.49304 4.51219 4.54986 4.61762 4.63946 4.68068 4.71243 4.76098 4.84033 4.88645 4.90942 4.92331 5.05898 5.08328 5.19252 5.32945 5.35397 5.38807 5.53743 5.66476 6.13627 6.34729 6.66399 7.04533 7.14150 7.39241 7.69793 8.32007 9.21191 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015700 B = 0.002017 C = 0.001831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1782.987740 B =13879.198285 C =15288.801310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.078 3.922 4 H 0.101 0.899 5 C 0.173 3.827 6 N -0.623 5.623 7 C -0.246 4.246 8 H 0.082 0.918 9 C -0.064 4.064 10 N -0.949 5.949 11 Si 0.981 3.019 12 H -0.289 1.289 13 H -0.290 1.290 14 H -0.267 1.267 15 C 0.131 3.869 16 C 0.150 3.850 17 H 0.068 0.932 18 N -0.702 5.702 19 C 0.504 3.496 20 O -0.595 6.595 21 C -0.122 4.122 22 C -0.099 4.099 23 C -0.020 4.020 24 C 0.193 3.807 25 N -0.509 5.509 26 C 0.158 3.842 27 C -0.064 4.064 28 N -0.416 5.416 29 O 0.066 5.934 30 H 0.099 0.901 31 H 0.069 0.931 32 H 0.033 0.967 33 H 0.014 0.986 34 H 0.022 0.978 35 H 0.249 0.751 36 H 0.045 0.955 37 H 0.030 0.970 38 H 0.419 0.581 39 H 0.135 0.865 40 H 0.140 0.860 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.137 0.863 44 H 0.142 0.858 45 H 0.106 0.894 46 H 0.094 0.906 47 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.267 -0.502 27.506 27.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C 0.018 3.982 4 H 0.119 0.881 5 C 0.047 3.953 6 N -0.351 5.351 7 C -0.375 4.375 8 H 0.100 0.900 9 C -0.257 4.257 10 N -0.597 5.597 11 Si 0.809 3.191 12 H -0.216 1.216 13 H -0.216 1.216 14 H -0.192 1.192 15 C 0.004 3.996 16 C 0.043 3.957 17 H 0.086 0.914 18 N -0.354 5.354 19 C 0.293 3.707 20 O -0.475 6.475 21 C -0.161 4.161 22 C -0.139 4.139 23 C -0.058 4.058 24 C -0.027 4.027 25 N -0.244 5.244 26 C -0.115 4.115 27 C -0.122 4.122 28 N -0.128 5.128 29 O 0.010 5.990 30 H 0.117 0.883 31 H 0.087 0.913 32 H 0.052 0.948 33 H 0.032 0.968 34 H 0.041 0.959 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.049 0.951 38 H 0.257 0.743 39 H 0.153 0.847 40 H 0.158 0.842 41 H 0.077 0.923 42 H 0.071 0.929 43 H 0.154 0.846 44 H 0.160 0.840 45 H 0.124 0.876 46 H 0.113 0.887 47 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -0.882 -1.391 27.422 27.472 hybrid contribution 0.062 0.393 -1.565 1.615 sum -0.820 -0.998 25.857 25.889 Atomic orbital electron populations 1.22995 0.79270 1.03853 1.00857 1.87897 1.21816 1.27071 1.94913 1.23484 0.93721 0.85276 0.95674 0.88137 1.21294 0.87141 0.94560 0.92265 1.44537 1.22153 1.66216 1.02171 1.19437 1.02723 1.29331 0.85986 0.90038 1.25686 0.98491 1.01532 1.00002 1.70164 1.20534 1.48368 1.20645 0.85042 0.77294 0.78081 0.78685 1.21596 1.21614 1.19187 1.21941 0.97064 0.96001 0.84560 1.21749 0.95367 0.97889 0.80724 0.91409 1.45724 1.23201 1.61704 1.04804 1.21683 0.81782 0.76538 0.90699 1.90734 1.31220 1.44755 1.80782 1.21661 1.00975 1.06568 0.86898 1.21221 0.98427 1.01963 0.92271 1.20558 0.89297 1.04554 0.91398 1.29602 0.98078 0.80809 0.94188 1.71938 1.03101 1.31785 1.17549 1.26629 1.01740 0.85082 0.98018 1.20330 0.84777 1.04617 1.02437 1.74622 0.95181 1.24057 1.18903 1.85248 1.27619 1.33418 1.52678 0.88285 0.91276 0.94840 0.96791 0.95947 0.94214 0.93683 0.95141 0.74266 0.84740 0.84246 0.92266 0.92947 0.84550 0.83987 0.87572 0.88710 0.88272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 10.85 113.37 1.23 1.87 16 2 O -0.40 -13.84 10.44 -148.98 -1.56 -15.40 16 3 C 0.08 2.78 3.07 31.78 0.10 2.87 16 4 H 0.10 2.84 7.68 -2.39 -0.02 2.83 16 5 C 0.17 8.60 5.15 86.73 0.45 9.05 16 6 N -0.62 -32.81 3.39 -691.99 -2.35 -35.16 16 7 C -0.25 -14.15 10.28 84.03 0.86 -13.28 16 8 H 0.08 4.52 7.83 -2.91 -0.02 4.49 16 9 C -0.06 -3.69 5.49 84.86 0.47 -3.23 16 10 N -0.95 -57.40 10.31 21.65 0.22 -57.18 16 11 Si 0.98 46.44 29.55 68.60 2.03 48.47 16 12 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 13 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.23 16 15 C 0.13 5.55 6.93 86.86 0.60 6.15 16 16 C 0.15 5.40 3.09 46.38 0.14 5.54 16 17 H 0.07 2.98 7.63 -2.39 -0.02 2.96 16 18 N -0.70 -16.73 5.22 -435.96 -2.27 -19.00 16 19 C 0.50 12.27 7.83 87.66 0.69 12.96 16 20 O -0.59 -21.79 15.67 -3.03 -0.05 -21.84 16 21 C -0.12 -1.25 5.70 29.85 0.17 -1.08 16 22 C -0.10 -1.41 4.49 30.59 0.14 -1.27 16 23 C -0.02 -0.15 5.84 29.85 0.17 0.02 16 24 C 0.19 3.33 7.77 88.38 0.69 4.02 16 25 N -0.51 -10.82 11.55 -303.20 -3.50 -14.32 16 26 C 0.16 3.28 8.22 138.46 1.14 4.41 16 27 C -0.06 -0.78 10.51 71.24 0.75 -0.03 16 28 N -0.42 -9.69 12.16 -60.32 -0.73 -10.43 16 29 O 0.07 1.37 11.31 74.87 0.85 2.21 16 30 H 0.10 2.04 8.14 -2.39 -0.02 2.02 16 31 H 0.07 1.23 8.11 -2.38 -0.02 1.21 16 32 H 0.03 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.01 0.81 7.30 -2.39 -0.02 0.79 16 34 H 0.02 1.20 7.50 -2.39 -0.02 1.19 16 35 H 0.25 14.58 8.31 -92.71 -0.77 13.81 16 36 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 37 H 0.03 1.39 8.14 -2.39 -0.02 1.37 16 38 H 0.42 6.19 8.54 -92.71 -0.79 5.40 16 39 H 0.13 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.14 0.40 8.14 -2.39 -0.02 0.39 16 41 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 42 H 0.05 1.06 8.10 -2.38 -0.02 1.04 16 43 H 0.14 0.48 8.14 -2.39 -0.02 0.46 16 44 H 0.14 0.10 8.14 -2.38 -0.02 0.08 16 45 H 0.11 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 47 H 0.10 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -86.97 394.80 0.42 -86.56 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: 0.19 Total: 8.08 kcal Atomic # 6 Polarization: 20.42 SS G_CDS: 7.59 Total: 28.00 kcal Atomic # 7 Polarization: -127.45 SS G_CDS: -8.64 Total: -136.09 kcal Atomic # 8 Polarization: -34.27 SS G_CDS: -0.76 Total: -35.02 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -86.97 0.42 -86.56 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001213855529.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.422 kcal (2) G-P(sol) polarization free energy of solvation -86.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.553 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.417 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds