Wall clock time and date at job start Tue Mar 31 2020 21:32:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.31094 * 119.27705 * 2 1 4 4 C 1.34138 * 122.26333 * 179.39122 * 3 2 1 5 5 C 1.36645 * 118.00546 * 359.70348 * 4 3 2 6 6 C 1.40500 * 118.33900 * 0.78777 * 5 4 3 7 7 O 1.35521 * 120.03631 * 179.31373 * 6 5 4 8 8 C 1.42895 * 116.99886 * 174.42791 * 7 6 5 9 9 H 1.09004 * 109.47250 * 334.23138 * 8 7 6 10 10 C 1.50706 * 109.46917 * 214.23514 * 8 7 6 11 11 H 1.07998 * 119.99662 * 353.91463 * 10 8 7 12 12 C 1.37873 * 120.00176 * 173.91052 * 10 8 7 13 13 N 1.31514 * 119.99991 * 0.02562 * 12 10 8 14 14 Si 1.86798 * 120.00117 * 179.97438 * 12 10 8 15 15 H 1.48502 * 109.46754 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47260 * 119.99902 * 14 12 10 17 17 H 1.48499 * 109.47314 * 240.00275 * 14 12 10 18 18 C 1.53002 * 109.47486 * 94.23749 * 8 7 6 19 19 N 1.46897 * 109.46968 * 58.01390 * 18 8 7 20 20 C 1.46899 * 109.47430 * 63.71935 * 19 18 8 21 21 C 1.46902 * 109.46974 * 183.72102 * 19 18 8 22 22 C 1.46900 * 109.47298 * 303.71762 * 19 18 8 23 23 N 1.31793 * 119.28049 * 179.72164 * 2 1 3 24 24 C 1.50604 * 125.86834 * 181.27562 * 5 4 3 25 25 S 1.81412 * 110.25087 * 340.99292 * 24 5 4 26 26 C 1.82064 * 100.91204 * 45.74966 * 25 24 5 27 27 C 1.50028 * 115.09417 * 179.03614 * 4 3 2 28 28 H 1.09002 * 109.47107 * 90.00505 * 1 2 3 29 29 H 1.08998 * 109.46972 * 209.99852 * 1 2 3 30 30 H 1.09004 * 109.47295 * 330.00102 * 1 2 3 31 31 H 0.96996 * 120.00137 * 179.97438 * 13 12 10 32 32 H 1.08993 * 109.47259 * 178.01710 * 18 8 7 33 33 H 1.09003 * 109.46887 * 298.01032 * 18 8 7 34 34 H 1.09001 * 109.46982 * 41.68914 * 20 19 18 35 35 H 1.08999 * 109.47200 * 161.69047 * 20 19 18 36 36 H 1.08997 * 109.46784 * 281.69239 * 20 19 18 37 37 H 1.09004 * 109.47317 * 59.99663 * 21 19 18 38 38 H 1.08998 * 109.46974 * 179.97438 * 21 19 18 39 39 H 1.08996 * 109.46692 * 299.99824 * 21 19 18 40 40 H 1.08995 * 109.47316 * 82.59652 * 22 19 18 41 41 H 1.08999 * 109.47296 * 202.60568 * 22 19 18 42 42 H 1.09007 * 109.47003 * 322.60310 * 22 19 18 43 43 H 1.08999 * 109.34388 * 220.75417 * 24 5 4 44 44 H 1.09003 * 109.20973 * 101.15342 * 24 5 4 45 45 H 1.08996 * 109.78651 * 176.50914 * 26 25 24 46 46 H 1.08999 * 109.83090 * 55.70890 * 26 25 24 47 47 H 1.08993 * 108.70408 * 280.86316 * 27 4 3 48 48 H 1.09001 * 108.69741 * 38.84642 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1481 1.1435 0.0000 4 6 3.4876 1.2134 0.0121 5 6 4.1911 0.0421 0.0309 6 6 3.4746 -1.1665 0.0196 7 8 4.1378 -2.3483 0.0236 8 6 3.3489 -3.5345 0.1352 9 1 2.4126 -3.3018 0.6424 10 6 4.1062 -4.5686 0.9279 11 1 5.1275 -4.3805 1.2241 12 6 3.4950 -5.7547 1.2750 13 7 2.2513 -5.9839 0.9139 14 14 4.4338 -7.0368 2.2570 15 1 5.8053 -6.5401 2.5357 16 1 3.7299 -7.2911 3.5396 17 1 4.5125 -8.2979 1.4770 18 6 3.0498 -4.0815 -1.2621 19 7 4.3123 -4.3505 -1.9632 20 6 5.0512 -5.4040 -1.2546 21 6 4.0263 -4.7911 -3.3351 22 6 5.1221 -3.1254 -2.0012 23 7 2.1516 -1.1495 0.0056 24 6 5.6910 -0.0858 0.0737 25 16 6.4688 1.4649 -0.4569 26 6 5.4903 2.6800 0.4817 27 6 4.0524 2.6031 -0.0128 28 1 -0.3633 -0.0001 -1.0277 29 1 -0.3633 -0.8900 0.5138 30 1 -0.3634 0.8900 0.5138 31 1 1.8215 -6.8186 1.1578 32 1 2.4780 -5.0054 -1.1759 33 1 2.4716 -3.3475 -1.8235 34 1 4.3586 -6.1847 -0.9400 35 1 5.8023 -5.8309 -1.9191 36 1 5.5407 -4.9782 -0.3788 37 1 3.4781 -4.0093 -3.8609 38 1 4.9631 -4.9903 -3.8555 39 1 3.4255 -5.7001 -3.3069 40 1 5.6628 -3.0180 -1.0609 41 1 5.8336 -3.1855 -2.8247 42 1 4.4706 -2.2636 -2.1460 43 1 6.0038 -0.8919 -0.5899 44 1 6.0025 -0.3157 1.0927 45 1 5.8855 3.6817 0.3126 46 1 5.5280 2.4432 1.5449 47 1 4.0141 2.9777 -1.0356 48 1 3.4325 3.2435 0.6146 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001228821137.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:32:49 Heat of formation + Delta-G solvation = 119.971717 kcal Electronic energy + Delta-G solvation = -29622.226962 eV Core-core repulsion = 25922.761246 eV Total energy + Delta-G solvation = -3699.465717 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.164 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -43.12513 -42.26543 -39.44238 -36.85050 -35.69636 -34.17390 -32.80837 -31.50482 -31.32019 -29.75407 -29.51533 -27.86141 -27.19993 -26.03558 -24.61538 -24.03313 -23.06692 -22.03781 -19.71443 -19.52641 -18.55185 -17.92765 -17.82456 -17.33856 -16.88193 -16.81886 -16.66340 -16.19488 -15.90378 -15.43439 -15.32581 -15.05840 -14.99451 -14.56331 -14.40897 -14.05647 -13.92136 -13.87025 -13.63325 -13.47265 -13.45047 -13.24429 -13.21982 -13.04147 -12.94859 -12.84992 -12.69361 -12.67125 -12.40658 -12.25446 -12.15142 -12.01616 -11.43469 -11.02203 -10.91891 -10.72677 -10.36916 -9.87944 -8.77101 -8.53095 -6.58178 -0.25469 0.00101 0.70109 1.04636 1.32162 1.36296 1.47932 1.52776 1.78995 2.26584 2.53302 2.79513 2.82002 2.90401 3.00156 3.11657 3.17023 3.45216 3.53471 3.81203 3.94910 3.98641 4.01591 4.05469 4.17262 4.18947 4.24224 4.27383 4.34805 4.43541 4.54960 4.59063 4.61321 4.65882 4.67944 4.72452 4.74503 4.76547 4.80445 4.81894 4.87891 4.98092 5.03224 5.21640 5.29780 5.43950 5.60225 5.88159 6.07532 6.51306 7.01563 7.08650 8.52013 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.348 3.652 3 N -0.565 5.565 4 C 0.199 3.801 5 C -0.217 4.217 6 C 0.370 3.630 7 O -0.287 6.287 8 C 0.202 3.798 9 H 0.054 0.946 10 C -0.539 4.539 11 H 0.086 0.914 12 C 0.058 3.942 13 N -0.891 5.891 14 Si 0.929 3.071 15 H -0.260 1.260 16 H -0.309 1.309 17 H -0.270 1.270 18 C 0.007 3.993 19 N -0.243 5.243 20 C -0.037 4.037 21 C -0.045 4.045 22 C -0.035 4.035 23 N -0.584 5.584 24 C -0.016 4.016 25 S -0.266 6.266 26 C -0.076 4.076 27 C -0.068 4.068 28 H 0.102 0.898 29 H 0.085 0.915 30 H 0.094 0.906 31 H 0.275 0.725 32 H 0.132 0.868 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.126 0.874 36 H 0.130 0.870 37 H 0.117 0.883 38 H 0.143 0.857 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.142 0.858 42 H 0.089 0.911 43 H 0.133 0.867 44 H 0.097 0.903 45 H 0.139 0.861 46 H 0.092 0.908 47 H 0.111 0.889 48 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.209 3.664 -12.733 14.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.080 3.920 3 N -0.285 5.285 4 C 0.060 3.940 5 C -0.224 4.224 6 C 0.178 3.822 7 O -0.191 6.191 8 C 0.147 3.853 9 H 0.072 0.928 10 C -0.576 4.576 11 H 0.104 0.896 12 C -0.147 4.147 13 N -0.527 5.527 14 Si 0.756 3.244 15 H -0.183 1.183 16 H -0.236 1.236 17 H -0.196 1.196 18 C -0.116 4.116 19 N 0.099 4.901 20 C -0.178 4.178 21 C -0.186 4.186 22 C -0.176 4.176 23 N -0.315 5.315 24 C -0.165 4.165 25 S -0.038 6.038 26 C -0.224 4.224 27 C -0.107 4.107 28 H 0.121 0.879 29 H 0.103 0.897 30 H 0.112 0.888 31 H 0.085 0.915 32 H 0.150 0.850 33 H 0.120 0.880 34 H 0.110 0.890 35 H 0.144 0.856 36 H 0.148 0.852 37 H 0.136 0.864 38 H 0.162 0.838 39 H 0.131 0.869 40 H 0.136 0.864 41 H 0.160 0.840 42 H 0.108 0.892 43 H 0.151 0.849 44 H 0.116 0.884 45 H 0.157 0.843 46 H 0.111 0.889 47 H 0.129 0.871 48 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 5.304 3.569 -13.478 14.918 hybrid contribution -0.638 -1.290 2.132 2.572 sum 4.665 2.280 -11.347 12.478 Atomic orbital electron populations 1.20675 0.83980 1.04642 1.05014 1.23275 0.98932 0.82178 0.87571 1.68380 1.09681 1.30579 1.19868 1.21331 0.88802 0.95480 0.88353 1.20048 0.97629 0.91237 1.13484 1.20486 0.87517 0.87601 0.86582 1.86442 1.35991 1.12067 1.84645 1.20249 0.93978 0.78778 0.92300 0.92800 1.21099 1.00627 0.99215 1.36644 0.89571 1.25062 0.94980 0.99375 0.95238 1.69823 1.11666 1.26455 1.44786 0.85938 0.79617 0.80108 0.78730 1.18330 1.23625 1.19554 1.24065 0.84988 1.06816 0.95683 1.45603 1.14315 1.15299 1.14833 1.24595 0.99654 0.91730 1.01780 1.24267 1.08771 1.05787 0.79737 1.24315 0.98548 0.85758 1.09018 1.68120 1.08209 1.32328 1.22891 1.21954 0.89848 0.98424 1.06296 1.87225 1.49961 1.03225 1.63374 1.23408 0.94928 1.02199 1.01871 1.20329 0.95168 0.89875 1.05294 0.87935 0.89668 0.88771 0.91540 0.85032 0.88044 0.88986 0.85630 0.85190 0.86412 0.83847 0.86931 0.86423 0.84022 0.89189 0.84887 0.88445 0.84308 0.88896 0.87133 0.87201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.05 10.33 71.24 0.74 0.68 16 2 C 0.35 2.05 7.64 138.96 1.06 3.11 16 3 N -0.56 -3.29 10.04 -177.41 -1.78 -5.07 16 4 C 0.20 0.54 6.57 41.62 0.27 0.81 16 5 C -0.22 -0.36 5.77 -19.72 -0.11 -0.48 16 6 C 0.37 1.36 6.87 85.17 0.59 1.95 16 7 O -0.29 -0.16 4.51 -88.24 -0.40 -0.56 16 8 C 0.20 0.91 2.03 29.85 0.06 0.97 16 9 H 0.05 0.78 6.94 -2.38 -0.02 0.76 16 10 C -0.54 -4.62 5.29 25.60 0.14 -4.49 16 11 H 0.09 0.71 7.01 -2.91 -0.02 0.69 16 12 C 0.06 0.77 3.76 84.65 0.32 1.09 16 13 N -0.89 -14.85 11.77 21.45 0.25 -14.60 16 14 Si 0.93 12.30 29.54 68.60 2.03 14.33 16 15 H -0.26 -3.18 7.11 99.48 0.71 -2.47 16 16 H -0.31 -6.10 7.11 99.48 0.71 -5.39 16 17 H -0.27 -3.39 7.11 99.48 0.71 -2.69 16 18 C 0.01 -0.04 4.06 86.30 0.35 0.31 16 19 N -0.24 3.74 0.05 ******* -0.07 3.68 16 20 C -0.04 0.45 6.88 127.69 0.88 1.33 16 21 C -0.05 1.02 7.85 127.69 1.00 2.03 16 22 C -0.04 0.60 6.69 127.69 0.85 1.46 16 23 N -0.58 -3.91 8.68 -300.82 -2.61 -6.52 16 24 C -0.02 0.04 5.83 71.21 0.42 0.45 16 25 S -0.27 0.43 22.34 -56.49 -1.26 -0.84 16 26 C -0.08 0.35 6.57 71.73 0.47 0.82 16 27 C -0.07 0.19 5.57 29.39 0.16 0.35 16 28 H 0.10 -0.28 8.14 -2.39 -0.02 -0.30 16 29 H 0.08 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.09 -0.06 8.14 -2.38 -0.02 -0.08 16 31 H 0.27 4.97 8.31 -92.71 -0.77 4.20 16 32 H 0.13 0.01 6.30 -2.39 -0.02 -0.01 16 33 H 0.10 -0.65 8.05 -2.39 -0.02 -0.67 16 34 H 0.09 -0.53 6.17 -2.39 -0.01 -0.55 16 35 H 0.13 -2.57 7.83 -2.39 -0.02 -2.59 16 36 H 0.13 -1.03 4.46 -2.39 -0.01 -1.04 16 37 H 0.12 -2.83 8.13 -2.38 -0.02 -2.85 16 38 H 0.14 -4.08 7.87 -2.39 -0.02 -4.10 16 39 H 0.11 -2.41 8.14 -2.39 -0.02 -2.43 16 40 H 0.12 -1.60 5.17 -2.39 -0.01 -1.61 16 41 H 0.14 -3.51 7.74 -2.39 -0.02 -3.53 16 42 H 0.09 -1.26 6.59 -2.38 -0.02 -1.28 16 43 H 0.13 -0.88 6.60 -2.39 -0.02 -0.89 16 44 H 0.10 -0.13 8.14 -2.39 -0.02 -0.14 16 45 H 0.14 -1.13 8.14 -2.39 -0.02 -1.15 16 46 H 0.09 -0.41 8.14 -2.39 -0.02 -0.43 16 47 H 0.11 -0.44 8.14 -2.39 -0.02 -0.46 16 48 H 0.11 -0.40 8.14 -2.39 -0.02 -0.42 16 Total: 0.00 -32.83 370.42 4.31 -28.52 By element: Atomic # 1 Polarization: -30.31 SS G_CDS: 0.96 Total: -29.35 kcal Atomic # 6 Polarization: 3.22 SS G_CDS: 7.19 Total: 10.41 kcal Atomic # 7 Polarization: -18.30 SS G_CDS: -4.21 Total: -22.51 kcal Atomic # 8 Polarization: -0.16 SS G_CDS: -0.40 Total: -0.56 kcal Atomic # 14 Polarization: 12.30 SS G_CDS: 2.03 Total: 14.33 kcal Atomic # 16 Polarization: 0.43 SS G_CDS: -1.26 Total: -0.84 kcal Total: -32.83 4.31 -28.52 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001228821137.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.491 kcal (2) G-P(sol) polarization free energy of solvation -32.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 115.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.309 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds