Wall clock time and date at job start Tue Mar 31 2020 21:30:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 110.52947 * 2 1 4 4 C 1.53002 * 109.47428 * 293.90642 * 3 2 1 5 5 H 1.08996 * 109.87291 * 306.86655 * 4 3 2 6 6 C 1.54324 * 109.87806 * 67.87267 * 4 3 2 7 7 C 1.55167 * 102.93908 * 141.61142 * 6 4 3 8 8 C 1.54905 * 101.58004 * 324.49850 * 7 6 4 9 9 N 1.47016 * 109.88619 * 185.84305 * 4 3 2 10 10 C 1.34777 * 125.64594 * 61.60768 * 9 4 3 11 11 O 1.21585 * 120.00112 * 5.08415 * 10 9 4 12 12 N 1.34771 * 120.00031 * 185.08239 * 10 9 4 13 13 C 1.46504 * 120.00201 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47231 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47160 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00171 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00103 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00028 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99571 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46968 * 90.00560 * 19 17 15 21 21 H 1.48500 * 109.46684 * 209.99791 * 19 17 15 22 22 H 1.48495 * 109.47620 * 329.99832 * 19 17 15 23 23 N 1.47308 * 110.60033 * 237.17435 * 2 1 3 24 24 C 1.34866 * 106.44065 * 241.26784 * 23 2 1 25 25 O 1.21540 * 123.72864 * 180.02562 * 24 23 2 26 26 N 1.33795 * 112.49427 * 0.13389 * 24 23 2 27 27 C 1.34762 * 111.64847 * 359.91023 * 26 24 23 28 28 O 1.21233 * 127.15711 * 180.02562 * 27 26 24 29 29 H 1.08997 * 109.47089 * 70.56191 * 1 2 3 30 30 H 1.09003 * 109.46425 * 190.55885 * 1 2 3 31 31 H 1.08994 * 109.47257 * 310.55805 * 1 2 3 32 32 H 1.09007 * 109.46668 * 173.91220 * 3 2 1 33 33 H 1.08994 * 109.47167 * 53.91084 * 3 2 1 34 34 H 1.08998 * 110.72578 * 259.97497 * 6 4 3 35 35 H 1.08997 * 110.72244 * 23.07648 * 6 4 3 36 36 H 1.08998 * 110.99965 * 82.57219 * 7 6 4 37 37 H 1.08999 * 111.00308 * 206.42502 * 7 6 4 38 38 H 1.09004 * 110.36645 * 155.84079 * 8 7 6 39 39 H 1.08994 * 110.37185 * 278.05985 * 8 7 6 40 40 H 0.97001 * 120.00064 * 0.02562 * 12 10 9 41 41 H 1.08992 * 109.47167 * 299.99952 * 13 12 10 42 42 H 1.08997 * 109.46892 * 60.00420 * 13 12 10 43 43 H 1.09006 * 109.47059 * 299.99991 * 14 13 12 44 44 H 1.09001 * 109.47667 * 59.99859 * 14 13 12 45 45 H 0.97002 * 119.99964 * 179.97438 * 18 17 15 46 46 H 0.97002 * 126.69220 * 61.26504 * 23 2 1 47 47 H 0.97005 * 124.17075 * 179.87890 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4329 0.0000 4 6 1.6981 2.1156 -1.3187 5 1 2.0298 1.5041 -2.1579 6 6 0.1708 2.3240 -1.3928 7 6 0.0423 3.7157 -2.0668 8 6 1.2617 4.4631 -1.4718 9 7 2.3268 3.4427 -1.3876 10 6 3.6525 3.6854 -1.3742 11 8 4.4403 2.7595 -1.3934 12 7 4.1049 4.9545 -1.3397 13 6 5.5459 5.2184 -1.3257 14 6 5.7874 6.7286 -1.2854 15 6 7.2697 7.0001 -1.2717 16 1 7.9695 6.1778 -1.2902 17 6 7.7326 8.2984 -1.2354 18 7 9.0260 8.5353 -1.2229 19 14 6.5221 9.7208 -1.2040 20 1 6.1946 10.0611 0.2040 21 1 7.1283 10.9014 -1.8703 22 1 5.2813 9.3309 -1.9205 23 7 2.0484 -0.7475 -1.1587 24 6 2.7647 -1.7757 -0.6602 25 8 3.3359 -2.5973 -1.3501 26 7 2.7745 -1.7917 0.6776 27 6 2.0635 -0.7692 1.1922 28 8 1.8874 -0.5168 2.3649 29 1 -0.3633 0.3420 -0.9691 30 1 -0.3632 -1.0103 0.1883 31 1 -0.3633 0.6682 0.7807 32 1 3.1511 1.4147 0.1090 33 1 1.6272 1.9854 0.8304 34 1 -0.2943 1.5534 -2.0076 35 1 -0.2659 2.3344 -0.3942 36 1 0.1249 3.6340 -3.1506 37 1 -0.8908 4.2025 -1.7832 38 1 1.5677 5.2752 -2.1314 39 1 1.0233 4.8495 -0.4809 40 1 3.4764 5.6932 -1.3241 41 1 5.9914 4.7560 -0.4450 42 1 6.0003 4.8013 -2.2243 43 1 5.3418 7.1915 -2.1660 44 1 5.3330 7.1455 -0.3866 45 1 9.3516 9.4487 -1.1977 46 1 1.9023 -0.5398 -2.0949 47 1 3.2361 -2.4575 1.2111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261083162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:51 Heat of formation + Delta-G solvation = -68.175604 kcal Electronic energy + Delta-G solvation = -30206.637517 eV Core-core repulsion = 26004.490078 eV Total energy + Delta-G solvation = -4202.147440 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.87737 -40.41102 -38.95501 -38.16114 -36.70505 -35.08191 -34.92483 -32.92109 -32.18267 -31.67085 -30.21953 -29.28067 -27.31962 -25.07085 -24.51629 -23.24648 -22.67825 -21.49419 -21.01975 -20.74049 -19.53457 -18.59056 -17.98092 -17.14195 -16.97137 -16.90461 -16.49952 -16.03527 -15.98168 -15.36027 -15.19334 -14.81656 -14.49903 -14.39732 -14.20940 -13.99465 -13.73606 -13.55225 -13.43074 -13.09122 -12.92849 -12.71801 -12.61049 -12.19142 -12.08458 -11.54824 -11.43187 -11.27910 -11.21257 -11.12703 -11.07865 -10.70692 -10.49120 -10.40986 -10.28760 -10.00268 -9.89057 -9.76494 -9.34139 -8.88795 -8.63687 -8.38449 -6.12053 -4.12233 1.23516 2.06612 2.62256 2.71097 2.75684 3.23634 3.30876 3.32292 3.36778 3.53548 3.97993 4.06390 4.16336 4.29749 4.36243 4.37825 4.45429 4.78232 4.84147 4.92150 4.97380 5.02915 5.08933 5.20730 5.22639 5.31581 5.40949 5.43305 5.53200 5.63241 5.68304 5.70736 5.84351 5.99298 6.21421 6.23146 6.40925 6.55389 6.57761 6.76574 7.02295 7.03131 7.21826 7.24196 7.65785 7.82005 8.16751 8.43719 8.81664 8.92829 9.47844 11.01053 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.002599 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.632972 B =10769.422415 C =11704.997173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.126 3.874 3 C -0.129 4.129 4 C 0.164 3.836 5 H 0.075 0.925 6 C -0.137 4.137 7 C -0.132 4.132 8 C 0.097 3.903 9 N -0.638 5.638 10 C 0.717 3.283 11 O -0.587 6.587 12 N -0.738 5.738 13 C 0.148 3.852 14 C -0.021 4.021 15 C -0.523 4.523 16 H 0.076 0.924 17 C 0.069 3.931 18 N -0.898 5.898 19 Si 0.883 3.117 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.267 1.267 23 N -0.715 5.715 24 C 0.707 3.293 25 O -0.542 6.542 26 N -0.679 5.679 27 C 0.536 3.464 28 O -0.463 6.463 29 H 0.094 0.906 30 H 0.065 0.935 31 H 0.086 0.914 32 H 0.092 0.908 33 H 0.091 0.909 34 H 0.088 0.912 35 H 0.087 0.913 36 H 0.077 0.923 37 H 0.085 0.915 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.391 0.609 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.021 0.979 44 H 0.017 0.983 45 H 0.265 0.735 46 H 0.440 0.560 47 H 0.433 0.567 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.600 -15.193 0.913 30.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.035 3.965 3 C -0.168 4.168 4 C 0.059 3.941 5 H 0.093 0.907 6 C -0.175 4.175 7 C -0.170 4.170 8 C -0.026 4.026 9 N -0.378 5.378 10 C 0.419 3.581 11 O -0.465 6.465 12 N -0.392 5.392 13 C 0.025 3.975 14 C -0.058 4.058 15 C -0.561 4.561 16 H 0.094 0.906 17 C -0.133 4.133 18 N -0.536 5.536 19 Si 0.710 3.290 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 N -0.381 5.381 24 C 0.406 3.594 25 O -0.415 6.415 26 N -0.350 5.350 27 C 0.320 3.680 28 O -0.331 6.331 29 H 0.112 0.888 30 H 0.084 0.916 31 H 0.105 0.895 32 H 0.111 0.889 33 H 0.110 0.890 34 H 0.106 0.894 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.087 0.913 40 H 0.224 0.776 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.039 0.961 44 H 0.035 0.965 45 H 0.075 0.925 46 H 0.286 0.714 47 H 0.275 0.725 Dipole moment (debyes) X Y Z Total from point charges -25.545 -15.927 1.143 30.125 hybrid contribution -0.480 1.085 -0.061 1.188 sum -26.025 -14.842 1.081 29.980 Atomic orbital electron populations 1.22480 0.90188 1.03846 1.05288 1.21405 0.97153 0.93779 0.84202 1.22258 1.04094 0.90860 0.99618 1.21168 0.92005 0.84411 0.96544 0.90739 1.23189 0.94216 0.97791 1.02264 1.22784 0.97878 0.95534 1.00832 1.22343 0.87505 0.91853 1.00930 1.47686 1.03772 1.06999 1.79352 1.15559 0.80308 0.84190 0.78034 1.90920 1.53906 1.43379 1.58275 1.45565 1.10015 1.05108 1.78505 1.21401 0.76004 0.98518 1.01544 1.19787 0.98753 0.90564 0.96732 1.20911 0.89603 0.93964 1.51621 0.90581 1.25000 0.95080 0.98810 0.94388 1.69901 1.12711 1.20672 1.50353 0.86746 0.81708 0.82058 0.78513 1.20226 1.21276 1.19124 1.45728 1.54703 1.28566 1.09076 1.15905 0.79540 0.82311 0.81614 1.91066 1.48082 1.41596 1.60800 1.44310 1.51203 1.30716 1.08781 1.20698 0.77104 0.80345 0.89808 1.90843 1.56863 1.68768 1.16630 0.88799 0.91618 0.89505 0.88928 0.89039 0.89419 0.89487 0.90411 0.89633 0.90649 0.91350 0.77557 0.92117 0.92091 0.96086 0.96494 0.92531 0.71445 0.72506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 7.47 37.16 0.28 -0.38 16 2 C 0.13 0.91 1.00 -132.09 -0.13 0.78 16 3 C -0.13 -1.17 4.24 -26.73 -0.11 -1.29 16 4 C 0.16 1.36 2.77 -66.95 -0.19 1.17 16 5 H 0.07 0.66 6.77 -51.93 -0.35 0.31 16 6 C -0.14 -0.58 4.45 -24.89 -0.11 -0.69 16 7 C -0.13 -0.62 7.09 -24.58 -0.17 -0.79 16 8 C 0.10 0.73 6.50 -2.35 -0.02 0.72 16 9 N -0.64 -7.14 3.08 -168.44 -0.52 -7.65 16 10 C 0.72 11.66 8.21 -86.92 -0.71 10.95 16 11 O -0.59 -11.84 15.51 5.29 0.08 -11.76 16 12 N -0.74 -12.16 5.52 -65.23 -0.36 -12.52 16 13 C 0.15 3.03 5.61 -4.04 -0.02 3.01 16 14 C -0.02 -0.47 4.16 -27.88 -0.12 -0.58 16 15 C -0.52 -14.61 9.66 -34.44 -0.33 -14.95 16 16 H 0.08 2.31 7.99 -52.49 -0.42 1.90 16 17 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 18 N -0.90 -27.32 13.96 55.43 0.77 -26.55 16 19 Si 0.88 20.87 27.47 -169.99 -4.67 16.20 16 20 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 21 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.27 -5.91 6.54 56.52 0.37 -5.55 16 23 N -0.71 -5.55 5.45 -52.84 -0.29 -5.83 16 24 C 0.71 7.43 9.00 -87.71 -0.79 6.64 16 25 O -0.54 -7.69 18.04 5.33 0.10 -7.59 16 26 N -0.68 -6.02 5.70 -15.71 -0.09 -6.11 16 27 C 0.54 5.04 7.44 -10.56 -0.08 4.96 16 28 O -0.46 -5.48 18.02 5.60 0.10 -5.38 16 29 H 0.09 0.21 4.75 -51.93 -0.25 -0.04 16 30 H 0.06 0.27 8.10 -51.93 -0.42 -0.15 16 31 H 0.09 0.31 7.49 -51.93 -0.39 -0.08 16 32 H 0.09 1.23 6.86 -51.93 -0.36 0.87 16 33 H 0.09 0.78 8.00 -51.93 -0.42 0.37 16 34 H 0.09 0.20 6.47 -51.93 -0.34 -0.14 16 35 H 0.09 0.28 6.27 -51.93 -0.33 -0.04 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 38 H 0.08 0.58 7.51 -51.93 -0.39 0.19 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.39 5.40 7.09 -40.82 -0.29 5.12 16 41 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 42 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 43 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 44 H 0.02 0.37 7.57 -51.93 -0.39 -0.02 16 45 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 46 H 0.44 2.72 7.97 -40.82 -0.33 2.40 16 47 H 0.43 3.04 8.96 -40.82 -0.37 2.68 16 LS Contribution 374.57 15.07 5.64 5.64 Total: -1.00 -37.30 374.57 -8.51 -45.81 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -6.68 Total: 4.31 kcal Atomic # 6 Polarization: 14.03 SS G_CDS: -2.60 Total: 11.43 kcal Atomic # 7 Polarization: -58.18 SS G_CDS: -0.48 Total: -58.66 kcal Atomic # 8 Polarization: -25.01 SS G_CDS: 0.28 Total: -24.73 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -4.67 Total: 16.20 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -37.30 -8.51 -45.81 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261083162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.370 kcal (2) G-P(sol) polarization free energy of solvation -37.297 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.508 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.806 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.176 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds