Wall clock time and date at job start Tue Mar 31 2020 21:30:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53006 * 110.52947 * 2 1 4 4 C 1.53002 * 109.47428 * 293.90642 * 3 2 1 5 5 H 1.08996 * 109.87291 * 306.86655 * 4 3 2 6 6 C 1.54324 * 109.87806 * 67.87267 * 4 3 2 7 7 C 1.55167 * 102.93908 * 141.61142 * 6 4 3 8 8 C 1.54905 * 101.58004 * 324.49850 * 7 6 4 9 9 N 1.47016 * 109.88619 * 185.84305 * 4 3 2 10 10 C 1.34777 * 125.64594 * 61.60768 * 9 4 3 11 11 O 1.21585 * 120.00112 * 5.08415 * 10 9 4 12 12 N 1.34771 * 120.00031 * 185.08239 * 10 9 4 13 13 C 1.46504 * 120.00201 * 180.02562 * 12 10 9 14 14 C 1.52997 * 109.47231 * 180.02562 * 13 12 10 15 15 C 1.50701 * 109.47160 * 180.02562 * 14 13 12 16 16 H 1.07994 * 120.00171 * 0.02562 * 15 14 13 17 17 C 1.37883 * 120.00103 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00028 * 179.97438 * 17 15 14 19 19 Si 1.86802 * 119.99571 * 359.97438 * 17 15 14 20 20 H 1.48504 * 109.46968 * 90.00560 * 19 17 15 21 21 H 1.48500 * 109.46684 * 209.99791 * 19 17 15 22 22 H 1.48495 * 109.47620 * 329.99832 * 19 17 15 23 23 N 1.47308 * 110.60033 * 237.17435 * 2 1 3 24 24 C 1.34866 * 106.44065 * 241.26784 * 23 2 1 25 25 O 1.21540 * 123.72864 * 180.02562 * 24 23 2 26 26 N 1.33795 * 112.49427 * 0.13389 * 24 23 2 27 27 C 1.34762 * 111.64847 * 359.91023 * 26 24 23 28 28 O 1.21233 * 127.15711 * 180.02562 * 27 26 24 29 29 H 1.08997 * 109.47089 * 70.56191 * 1 2 3 30 30 H 1.09003 * 109.46425 * 190.55885 * 1 2 3 31 31 H 1.08994 * 109.47257 * 310.55805 * 1 2 3 32 32 H 1.09007 * 109.46668 * 173.91220 * 3 2 1 33 33 H 1.08994 * 109.47167 * 53.91084 * 3 2 1 34 34 H 1.08998 * 110.72578 * 259.97497 * 6 4 3 35 35 H 1.08997 * 110.72244 * 23.07648 * 6 4 3 36 36 H 1.08998 * 110.99965 * 82.57219 * 7 6 4 37 37 H 1.08999 * 111.00308 * 206.42502 * 7 6 4 38 38 H 1.09004 * 110.36645 * 155.84079 * 8 7 6 39 39 H 1.08994 * 110.37185 * 278.05985 * 8 7 6 40 40 H 0.97001 * 120.00064 * 0.02562 * 12 10 9 41 41 H 1.08992 * 109.47167 * 299.99952 * 13 12 10 42 42 H 1.08997 * 109.46892 * 60.00420 * 13 12 10 43 43 H 1.09006 * 109.47059 * 299.99991 * 14 13 12 44 44 H 1.09001 * 109.47667 * 59.99859 * 14 13 12 45 45 H 0.97002 * 119.99964 * 179.97438 * 18 17 15 46 46 H 0.97002 * 126.69220 * 61.26504 * 23 2 1 47 47 H 0.97005 * 124.17075 * 179.87890 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0666 1.4329 0.0000 4 6 1.6981 2.1156 -1.3187 5 1 2.0298 1.5041 -2.1579 6 6 0.1708 2.3240 -1.3928 7 6 0.0423 3.7157 -2.0668 8 6 1.2617 4.4631 -1.4718 9 7 2.3268 3.4427 -1.3876 10 6 3.6525 3.6854 -1.3742 11 8 4.4403 2.7595 -1.3934 12 7 4.1049 4.9545 -1.3397 13 6 5.5459 5.2184 -1.3257 14 6 5.7874 6.7286 -1.2854 15 6 7.2697 7.0001 -1.2717 16 1 7.9695 6.1778 -1.2902 17 6 7.7326 8.2984 -1.2354 18 7 9.0260 8.5353 -1.2229 19 14 6.5221 9.7208 -1.2040 20 1 6.1946 10.0611 0.2040 21 1 7.1283 10.9014 -1.8703 22 1 5.2813 9.3309 -1.9205 23 7 2.0484 -0.7475 -1.1587 24 6 2.7647 -1.7757 -0.6602 25 8 3.3359 -2.5973 -1.3501 26 7 2.7745 -1.7917 0.6776 27 6 2.0635 -0.7692 1.1922 28 8 1.8874 -0.5168 2.3649 29 1 -0.3633 0.3420 -0.9691 30 1 -0.3632 -1.0103 0.1883 31 1 -0.3633 0.6682 0.7807 32 1 3.1511 1.4147 0.1090 33 1 1.6272 1.9854 0.8304 34 1 -0.2943 1.5534 -2.0076 35 1 -0.2659 2.3344 -0.3942 36 1 0.1249 3.6340 -3.1506 37 1 -0.8908 4.2025 -1.7832 38 1 1.5677 5.2752 -2.1314 39 1 1.0233 4.8495 -0.4809 40 1 3.4764 5.6932 -1.3241 41 1 5.9914 4.7560 -0.4450 42 1 6.0003 4.8013 -2.2243 43 1 5.3418 7.1915 -2.1660 44 1 5.3330 7.1455 -0.3866 45 1 9.3516 9.4487 -1.1977 46 1 1.9023 -0.5398 -2.0949 47 1 3.2361 -2.4575 1.2111 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001261083162.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:30:50 Heat of formation + Delta-G solvation = -99.811359 kcal Electronic energy + Delta-G solvation = -30208.009346 eV Core-core repulsion = 26004.490078 eV Total energy + Delta-G solvation = -4203.519269 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -43.63996 -41.40482 -39.83818 -39.14323 -37.55554 -36.61252 -35.80241 -34.80052 -33.16330 -32.44708 -31.61294 -30.10002 -27.87975 -26.79082 -25.28353 -24.09639 -23.60374 -22.70157 -21.88096 -21.71949 -20.65016 -19.41733 -19.00136 -18.92846 -17.89302 -17.74437 -17.38305 -16.90261 -16.83703 -16.56638 -16.27697 -16.10394 -15.76885 -15.46852 -15.33753 -15.02008 -14.73734 -14.57686 -14.34703 -14.07309 -13.98968 -13.40067 -13.33549 -13.31780 -13.08695 -12.79342 -12.65676 -12.21237 -12.17578 -12.16403 -11.85402 -11.76251 -11.70161 -11.57425 -11.54072 -11.47199 -11.21858 -11.19557 -10.79734 -10.58909 -10.19837 -9.48414 -8.30724 -6.38562 0.43647 1.32968 1.38515 1.41784 1.53030 1.60889 1.88095 2.05512 2.13841 2.36622 2.80261 3.04229 3.04340 3.45157 3.57985 3.71493 3.77070 3.98358 4.19032 4.24172 4.30940 4.32122 4.41604 4.47576 4.63149 4.72740 4.73737 4.76710 4.90348 4.93451 4.95661 4.98550 5.11004 5.11564 5.21470 5.28461 5.39070 5.41711 5.43147 5.48372 5.65611 5.71856 5.79865 6.06318 6.22128 6.28941 6.68742 7.00507 7.03402 7.26028 7.57555 8.86312 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.015460 B = 0.002599 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1810.632972 B =10769.422415 C =11704.997173 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.135 3.865 3 C -0.122 4.122 4 C 0.155 3.845 5 H 0.067 0.933 6 C -0.127 4.127 7 C -0.122 4.122 8 C 0.083 3.917 9 N -0.633 5.633 10 C 0.711 3.289 11 O -0.636 6.636 12 N -0.731 5.731 13 C 0.166 3.834 14 C -0.009 4.009 15 C -0.541 4.541 16 H 0.026 0.974 17 C 0.003 3.997 18 N -0.952 5.952 19 Si 0.962 3.038 20 H -0.264 1.264 21 H -0.286 1.286 22 H -0.235 1.235 23 N -0.701 5.701 24 C 0.704 3.296 25 O -0.584 6.584 26 N -0.675 5.675 27 C 0.532 3.468 28 O -0.488 6.488 29 H 0.121 0.879 30 H 0.070 0.930 31 H 0.100 0.900 32 H 0.043 0.957 33 H 0.100 0.900 34 H 0.118 0.882 35 H 0.107 0.893 36 H 0.077 0.923 37 H 0.114 0.886 38 H 0.075 0.925 39 H 0.082 0.918 40 H 0.407 0.593 41 H 0.037 0.963 42 H 0.039 0.961 43 H 0.038 0.962 44 H 0.035 0.965 45 H 0.268 0.732 46 H 0.449 0.551 47 H 0.438 0.562 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.975 -13.765 0.606 34.817 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.044 3.956 3 C -0.162 4.162 4 C 0.051 3.949 5 H 0.085 0.915 6 C -0.165 4.165 7 C -0.160 4.160 8 C -0.038 4.038 9 N -0.370 5.370 10 C 0.412 3.588 11 O -0.518 6.518 12 N -0.386 5.386 13 C 0.041 3.959 14 C -0.047 4.047 15 C -0.579 4.579 16 H 0.045 0.955 17 C -0.194 4.194 18 N -0.592 5.592 19 Si 0.783 3.217 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.158 1.158 23 N -0.367 5.367 24 C 0.403 3.597 25 O -0.460 6.460 26 N -0.346 5.346 27 C 0.319 3.681 28 O -0.358 6.358 29 H 0.139 0.861 30 H 0.089 0.911 31 H 0.119 0.881 32 H 0.062 0.938 33 H 0.119 0.881 34 H 0.136 0.864 35 H 0.125 0.875 36 H 0.096 0.904 37 H 0.132 0.868 38 H 0.093 0.907 39 H 0.101 0.899 40 H 0.244 0.756 41 H 0.056 0.944 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.053 0.947 45 H 0.077 0.923 46 H 0.296 0.704 47 H 0.281 0.719 Dipole moment (debyes) X Y Z Total from point charges -31.026 -14.493 0.830 34.254 hybrid contribution 1.282 0.562 0.059 1.401 sum -29.743 -13.932 0.889 32.857 Atomic orbital electron populations 1.22578 0.86581 1.04835 1.07361 1.21475 0.99485 0.91992 0.82640 1.22151 1.01088 0.92251 1.00679 1.21499 0.94985 0.82934 0.95520 0.91530 1.23289 0.90352 0.98654 1.04167 1.22797 0.97353 0.95145 1.00668 1.22732 0.87466 0.91424 1.02186 1.47721 1.02512 1.09509 1.77285 1.15745 0.81943 0.83228 0.77860 1.90888 1.55989 1.44637 1.60277 1.45157 1.08371 1.06148 1.78962 1.20844 0.78518 0.97038 0.99469 1.19617 0.95198 0.91828 0.98019 1.21246 0.91972 0.93023 1.51683 0.95537 1.26117 0.97308 1.02391 0.93576 1.70080 1.15515 1.21685 1.51874 0.85504 0.79648 0.77074 0.79425 1.18940 1.21231 1.15753 1.45730 1.53658 1.27490 1.09812 1.16053 0.79385 0.82441 0.81778 1.91035 1.49913 1.43368 1.61694 1.44291 1.50938 1.30896 1.08443 1.21083 0.76649 0.80307 0.90078 1.90828 1.57849 1.69408 1.17764 0.86112 0.91132 0.88112 0.93807 0.88121 0.86366 0.87490 0.90441 0.86758 0.90663 0.89931 0.75633 0.94437 0.94296 0.94423 0.94653 0.92289 0.70417 0.71871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.65 7.47 71.98 0.54 -0.12 16 2 C 0.13 1.74 1.00 2.99 0.00 1.75 16 3 C -0.12 -2.09 4.24 30.60 0.13 -1.96 16 4 C 0.15 2.21 2.77 45.34 0.13 2.34 16 5 H 0.07 1.07 6.77 -2.39 -0.02 1.05 16 6 C -0.13 -0.42 4.45 31.79 0.14 -0.28 16 7 C -0.12 -0.51 7.09 31.99 0.23 -0.28 16 8 C 0.08 0.96 6.50 86.79 0.56 1.52 16 9 N -0.63 -13.05 3.08 -805.09 -2.48 -15.53 16 10 C 0.71 23.19 8.21 179.06 1.47 24.66 16 11 O -0.64 -26.91 15.51 -3.98 -0.06 -26.97 16 12 N -0.73 -23.71 5.52 -478.56 -2.64 -26.35 16 13 C 0.17 7.00 5.61 86.38 0.48 7.48 16 14 C -0.01 -0.39 4.16 29.85 0.12 -0.27 16 15 C -0.54 -31.24 9.66 25.60 0.25 -30.99 16 16 H 0.03 1.72 7.99 -2.91 -0.02 1.70 16 17 C 0.00 0.18 5.47 84.66 0.46 0.64 16 18 N -0.95 -59.77 13.96 21.45 0.30 -59.47 16 19 Si 0.96 42.06 27.47 68.60 1.88 43.95 16 20 H -0.26 -11.04 7.11 99.48 0.71 -10.33 16 21 H -0.29 -12.46 7.11 99.48 0.71 -11.75 16 22 H -0.23 -9.00 6.54 99.48 0.65 -8.35 16 23 N -0.70 -10.28 5.45 -439.33 -2.39 -12.67 16 24 C 0.70 15.03 9.00 179.33 1.61 16.64 16 25 O -0.58 -17.12 18.04 -3.84 -0.07 -17.19 16 26 N -0.68 -12.25 5.70 -440.87 -2.51 -14.77 16 27 C 0.53 9.83 7.44 87.94 0.65 10.49 16 28 O -0.49 -11.42 18.02 -2.89 -0.05 -11.47 16 29 H 0.12 -0.14 4.75 -2.39 -0.01 -0.15 16 30 H 0.07 0.31 8.10 -2.39 -0.02 0.29 16 31 H 0.10 0.24 7.49 -2.39 -0.02 0.22 16 32 H 0.04 1.21 6.86 -2.38 -0.02 1.19 16 33 H 0.10 1.53 8.00 -2.39 -0.02 1.51 16 34 H 0.12 -0.23 6.47 -2.39 -0.02 -0.25 16 35 H 0.11 0.03 6.27 -2.39 -0.01 0.01 16 36 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 37 H 0.11 -0.05 8.14 -2.39 -0.02 -0.07 16 38 H 0.07 0.89 7.51 -2.38 -0.02 0.87 16 39 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 40 H 0.41 10.37 7.09 -92.71 -0.66 9.71 16 41 H 0.04 1.73 8.14 -2.39 -0.02 1.71 16 42 H 0.04 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 1.58 7.20 -2.38 -0.02 1.56 16 44 H 0.04 1.47 7.57 -2.39 -0.02 1.45 16 45 H 0.27 15.59 8.31 -92.71 -0.77 14.82 16 46 H 0.45 4.96 7.97 -92.71 -0.74 4.22 16 47 H 0.44 6.54 8.96 -92.70 -0.83 5.71 16 Total: -1.00 -88.38 374.57 -2.47 -90.86 By element: Atomic # 1 Polarization: 19.24 SS G_CDS: -1.24 Total: 18.00 kcal Atomic # 6 Polarization: 24.83 SS G_CDS: 6.79 Total: 31.61 kcal Atomic # 7 Polarization: -119.06 SS G_CDS: -9.72 Total: -128.79 kcal Atomic # 8 Polarization: -55.45 SS G_CDS: -0.18 Total: -55.63 kcal Atomic # 14 Polarization: 42.06 SS G_CDS: 1.88 Total: 43.95 kcal Total: -88.38 -2.47 -90.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261083162.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.954 kcal (2) G-P(sol) polarization free energy of solvation -88.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds