Wall clock time and date at job start Tue Mar 31 2020 21:08:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.42895 * 113.99948 * 2 1 4 4 C 1.53006 * 109.47036 * 180.02562 * 3 2 1 5 5 C 1.52997 * 109.47127 * 179.97438 * 4 3 2 6 6 N 1.46496 * 109.47294 * 179.97438 * 5 4 3 7 7 C 1.34961 * 125.98060 * 124.71033 * 6 5 4 8 8 C 1.35240 * 107.86283 * 179.89686 * 7 6 5 9 9 C 1.50695 * 126.06858 * 180.11551 * 8 7 6 10 10 C 1.40405 * 107.86660 * 0.37276 * 8 7 6 11 11 N 1.40192 * 125.97147 * 179.80832 * 10 8 7 12 12 C 1.34783 * 119.99695 * 179.97438 * 11 10 8 13 13 O 1.21590 * 120.00086 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99472 * 179.97438 * 12 11 10 15 15 C 1.47064 * 136.06210 * 359.63562 * 14 12 11 16 16 C 1.53752 * 87.88636 * 152.96178 * 15 14 12 17 17 O 1.42897 * 114.39368 * 272.67164 * 16 15 14 18 18 C 1.50702 * 114.26841 * 139.79409 * 16 15 14 19 19 H 1.07999 * 119.99739 * 266.47763 * 18 16 15 20 20 C 1.37878 * 120.00340 * 86.46892 * 18 16 15 21 21 N 1.31514 * 119.99968 * 0.02562 * 20 18 16 22 22 Si 1.86794 * 120.00375 * 180.02562 * 20 18 16 23 23 H 1.48503 * 109.47148 * 0.02562 * 22 20 18 24 24 H 1.48504 * 109.47446 * 119.99975 * 22 20 18 25 25 H 1.48503 * 109.47195 * 240.00373 * 22 20 18 26 26 C 1.47071 * 136.05251 * 180.02562 * 14 12 11 27 27 N 1.31211 * 108.05386 * 359.76830 * 10 8 7 28 28 H 1.08999 * 109.47444 * 180.02562 * 1 2 3 29 29 H 1.09003 * 109.47182 * 300.00413 * 1 2 3 30 30 H 1.08995 * 109.47354 * 59.99869 * 1 2 3 31 31 H 1.09001 * 109.47626 * 60.00343 * 3 2 1 32 32 H 1.09001 * 109.47255 * 300.00084 * 3 2 1 33 33 H 1.09001 * 109.47002 * 299.99477 * 4 3 2 34 34 H 1.08993 * 109.46955 * 59.99914 * 4 3 2 35 35 H 1.09001 * 109.47289 * 299.99953 * 5 4 3 36 36 H 1.09004 * 109.47261 * 59.99697 * 5 4 3 37 37 H 1.08004 * 126.06601 * 0.02562 * 7 6 5 38 38 H 1.08998 * 109.47530 * 270.29691 * 9 8 7 39 39 H 1.09004 * 109.47201 * 30.29873 * 9 8 7 40 40 H 1.09000 * 109.47008 * 150.29546 * 9 8 7 41 41 H 0.97003 * 120.00128 * 359.97438 * 11 10 8 42 42 H 1.09003 * 113.46737 * 267.69327 * 15 14 12 43 43 H 1.08993 * 113.46868 * 38.13069 * 15 14 12 44 44 H 0.96698 * 114.00645 * 273.58872 * 17 16 15 45 45 H 0.96997 * 120.00281 * 179.97438 * 21 20 18 46 46 H 1.08996 * 113.46888 * 321.87085 * 26 14 12 47 47 H 1.08998 * 113.46600 * 92.30600 * 26 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1846 -0.0006 5 6 4.1578 2.5823 -0.0013 6 7 5.6182 2.4667 -0.0013 7 6 6.4577 3.0236 -0.8993 8 6 7.7203 2.6855 -0.5522 9 6 8.9783 3.0919 -1.2754 10 6 7.6506 1.8836 0.5982 11 7 8.7406 1.3210 1.2771 12 6 8.5343 0.5672 2.3752 13 8 7.4029 0.3748 2.7768 14 7 9.5822 0.0259 3.0275 15 6 11.0434 0.0177 2.8614 16 6 11.1577 -0.1937 4.3801 17 8 11.1685 1.0134 5.1448 18 6 12.2312 -1.1684 4.7907 19 1 11.9862 -2.2093 4.9419 20 6 13.5261 -0.7314 4.9731 21 7 13.8244 0.5362 4.7892 22 14 14.8568 -1.9397 5.4813 23 1 14.2672 -3.2954 5.6215 24 1 15.9213 -1.9682 4.4462 25 1 15.4401 -1.5165 6.7797 26 6 9.7670 -0.8222 4.2147 27 7 6.3871 1.7535 0.9273 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3634 0.5139 0.8900 30 1 -0.3634 0.5138 -0.8899 31 1 1.6887 1.8464 0.8900 32 1 1.6886 1.8464 -0.8900 33 1 3.8575 0.6436 0.8892 34 1 3.8567 0.6439 -0.8908 35 1 3.8358 3.1230 -0.8913 36 1 3.8365 3.1235 0.8887 37 1 6.1720 3.6331 -1.7440 38 1 9.2142 2.3506 -2.0389 39 1 8.8289 4.0636 -1.7463 40 1 9.8018 3.1557 -0.5641 41 1 9.6432 1.4742 0.9565 42 1 11.4091 -0.8265 2.2769 43 1 11.4471 0.9718 2.5229 44 1 12.0460 1.4066 5.2470 45 1 14.7353 0.8437 4.9178 46 1 9.0831 -0.5837 5.0293 47 1 9.7964 -1.8876 3.9867 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001261674590.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:08:55 Heat of formation + Delta-G solvation = 3.975256 kcal Electronic energy + Delta-G solvation = -29025.109330 eV Core-core repulsion = 24826.090587 eV Total energy + Delta-G solvation = -4199.018744 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 338.179 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.27381 -39.63647 -38.32689 -37.69278 -35.32721 -33.97351 -33.71297 -32.17579 -31.91545 -30.51434 -28.47926 -27.58235 -26.37916 -25.49087 -25.05954 -24.38860 -22.40146 -21.51723 -20.39419 -19.66892 -18.62073 -17.70730 -17.34577 -16.79619 -16.59193 -16.48717 -15.86188 -15.41722 -15.14442 -15.05085 -14.81490 -14.57007 -14.25380 -14.00331 -13.67873 -13.33482 -13.14051 -13.09436 -12.70812 -12.57197 -12.46674 -12.25593 -12.12429 -11.97860 -11.85749 -11.54535 -11.42622 -11.28326 -11.08627 -10.95374 -10.49532 -10.46593 -10.32494 -10.23452 -10.01970 -9.68484 -9.24236 -8.77393 -8.59612 -8.37359 -8.00851 -7.65526 -6.39670 -4.49646 1.97340 2.29253 2.83281 3.05530 3.14179 3.24015 3.28176 3.45318 3.96942 4.17318 4.29542 4.44595 4.63214 4.75689 4.77225 4.83886 4.85296 4.98107 5.00354 5.07478 5.13809 5.20385 5.28832 5.32974 5.56287 5.62512 5.70015 5.71848 5.81783 5.94085 6.00831 6.12287 6.16210 6.28000 6.40922 6.46674 6.58268 6.68606 6.80664 7.07067 7.09208 7.13429 7.40243 7.64110 7.82170 8.08566 8.54278 8.69372 9.14868 9.22506 9.51674 10.67036 Molecular weight = 338.18amu Principal moments of inertia in cm(-1) A = 0.017111 B = 0.002217 C = 0.002026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.962467 B =12627.272376 C =13820.062422 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.389 6.389 3 C 0.066 3.934 4 C -0.135 4.135 5 C 0.148 3.852 6 N -0.379 5.379 7 C 0.066 3.934 8 C -0.260 4.260 9 C -0.070 4.070 10 C 0.326 3.674 11 N -0.649 5.649 12 C 0.724 3.276 13 O -0.564 6.564 14 N -0.654 5.654 15 C 0.070 3.930 16 C 0.241 3.759 17 O -0.570 6.570 18 C -0.531 4.531 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.898 5.898 22 Si 0.909 3.091 23 H -0.270 1.270 24 H -0.281 1.281 25 H -0.281 1.281 26 C 0.130 3.870 27 N -0.268 5.268 28 H 0.086 0.914 29 H 0.042 0.958 30 H 0.040 0.960 31 H 0.053 0.947 32 H 0.050 0.950 33 H 0.092 0.908 34 H 0.075 0.925 35 H 0.095 0.905 36 H 0.084 0.916 37 H 0.172 0.828 38 H 0.060 0.940 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.413 0.587 42 H 0.080 0.920 43 H 0.061 0.939 44 H 0.393 0.607 45 H 0.273 0.727 46 H 0.066 0.934 47 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.887 6.311 -14.879 22.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.308 6.308 3 C -0.011 4.011 4 C -0.173 4.173 5 C 0.027 3.973 6 N -0.162 5.162 7 C -0.080 4.080 8 C -0.274 4.274 9 C -0.128 4.128 10 C 0.067 3.933 11 N -0.302 5.302 12 C 0.427 3.573 13 O -0.438 6.438 14 N -0.391 5.391 15 C -0.053 4.053 16 C 0.199 3.801 17 O -0.383 6.383 18 C -0.569 4.569 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.539 5.539 22 Si 0.736 3.264 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.206 1.206 26 C 0.008 3.992 27 N -0.097 5.097 28 H 0.105 0.895 29 H 0.060 0.940 30 H 0.059 0.941 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.111 0.889 34 H 0.094 0.906 35 H 0.113 0.887 36 H 0.103 0.897 37 H 0.189 0.811 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.250 0.750 42 H 0.098 0.902 43 H 0.079 0.921 44 H 0.250 0.750 45 H 0.083 0.917 46 H 0.085 0.915 47 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -18.202 5.575 -13.753 23.485 hybrid contribution 2.150 0.291 -0.721 2.286 sum -16.052 5.865 -14.474 22.396 Atomic orbital electron populations 1.22753 0.80876 1.02929 0.99927 1.87916 1.19788 1.27711 1.95395 1.22396 0.93440 0.85025 1.00256 1.21776 0.92978 0.96942 1.05585 1.21399 0.74668 0.97699 1.03577 1.48323 1.05935 1.40454 1.21480 1.22128 0.89395 1.00308 0.96208 1.19703 0.95856 1.10752 1.01095 1.20004 0.93203 1.00644 0.98965 1.18879 0.87643 0.94973 0.91809 1.41974 1.07170 1.52818 1.28237 1.15277 0.83820 0.79074 0.79158 1.90959 1.20577 1.64813 1.67482 1.48785 1.06521 1.52666 1.31168 1.24240 0.76692 1.00574 1.03791 1.19579 0.90387 0.84421 0.85730 1.86060 1.37966 1.40301 1.73964 1.21474 0.92475 0.95413 1.47552 0.90813 1.25084 0.98858 0.95718 0.93479 1.69273 1.21006 1.14450 1.49189 0.86255 0.80798 0.80987 0.78334 1.19387 1.20707 1.20645 1.23219 0.97357 0.93946 0.84704 1.78148 1.00788 1.18596 1.12121 0.89518 0.93954 0.94111 0.92875 0.93227 0.88933 0.90579 0.88725 0.89728 0.81051 0.92151 0.91893 0.92129 0.75037 0.90200 0.92092 0.75036 0.91657 0.91516 0.89813 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 101.05 1.11 1.34 16 2 O -0.39 -4.23 10.70 -35.23 -0.38 -4.61 16 3 C 0.07 0.56 5.94 37.16 0.22 0.78 16 4 C -0.13 -1.43 5.77 -26.73 -0.15 -1.58 16 5 C 0.15 1.37 6.51 -4.05 -0.03 1.35 16 6 N -0.38 -5.11 3.68 -61.38 -0.23 -5.33 16 7 C 0.07 0.74 11.35 -17.24 -0.20 0.55 16 8 C -0.26 -3.49 6.12 -104.88 -0.64 -4.14 16 9 C -0.07 -0.71 10.22 36.00 0.37 -0.34 16 10 C 0.33 5.80 7.78 -154.36 -1.20 4.60 16 11 N -0.65 -12.08 5.46 -15.50 -0.08 -12.16 16 12 C 0.72 16.31 8.76 -86.91 -0.76 15.55 16 13 O -0.56 -14.55 15.84 5.29 0.08 -14.46 16 14 N -0.65 -14.45 3.69 -190.84 -0.70 -15.15 16 15 C 0.07 1.50 7.72 -8.37 -0.06 1.44 16 16 C 0.24 5.81 1.58 -91.12 -0.14 5.67 16 17 O -0.57 -14.90 13.55 -35.23 -0.48 -15.38 16 18 C -0.53 -13.21 8.70 -34.44 -0.30 -13.51 16 19 H 0.07 1.79 7.81 -52.49 -0.41 1.38 16 20 C 0.07 1.75 5.39 -17.82 -0.10 1.65 16 21 N -0.90 -22.56 11.01 55.43 0.61 -21.95 16 22 Si 0.91 19.30 29.54 -169.99 -5.02 14.28 16 23 H -0.27 -5.68 7.11 56.52 0.40 -5.28 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.28 -6.01 7.11 56.52 0.40 -5.60 16 26 C 0.13 2.93 8.02 -8.50 -0.07 2.87 16 27 N -0.27 -5.06 10.64 31.44 0.33 -4.73 16 28 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 29 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.04 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 34 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 35 H 0.09 0.50 8.07 -51.93 -0.42 0.08 16 36 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.17 1.14 8.06 -52.48 -0.42 0.71 16 38 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 39 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 40 H 0.06 0.63 7.70 -51.93 -0.40 0.23 16 41 H 0.41 6.56 7.93 -40.82 -0.32 6.24 16 42 H 0.08 1.61 8.10 -51.93 -0.42 1.19 16 43 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 44 H 0.39 10.31 6.32 45.56 0.29 10.60 16 45 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 46 H 0.07 1.55 8.14 -51.93 -0.42 1.12 16 47 H 0.08 1.72 8.10 -51.93 -0.42 1.30 16 LS Contribution 398.39 15.07 6.00 6.00 Total: -1.00 -33.83 398.39 -8.55 -42.37 By element: Atomic # 1 Polarization: 21.65 SS G_CDS: -6.74 Total: 14.92 kcal Atomic # 6 Polarization: 18.16 SS G_CDS: -1.95 Total: 16.21 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.07 Total: -59.32 kcal Atomic # 8 Polarization: -33.69 SS G_CDS: -0.77 Total: -34.46 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -33.83 -8.55 -42.37 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001261674590.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.348 kcal (2) G-P(sol) polarization free energy of solvation -33.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds